build-cran-binaries/local
Repository files (latest commit first)
Filename Latest commit message Latest commit date
pat-s a84cca1949 fix(abi): prune the objects recorded broken, not every risky package (#211)
## Why

A dry run of the prune on `ubuntu-2404-amd64` (pipeline 12494):

```
Dry run: 3013 object(s) left in place. Re-run with --apply to delete.
```

3013 objects on one slot. The recorded verdicts say roughly **230** of that slot's objects actually fail `dyn.load()` anywhere.

The gap is the selector: the prune used `abi_cache_risky_packages()`, the source classifier, which calls **93%** of compiled packages risky where the binaries' own symbols say **4.3%**. Applying it would have deleted ~2800 working binaries and turned each into a source fallback for every client that cannot be routed by R minor.

This is the same mistake #129 fixed in the index writer. The prune was written before the per-object verdicts existed (#200, before #128/#129) and was never brought forward.

## What changed

- Selection comes from `abi_flat_safety`, every `NOT safe` row for the slot regardless of which minor it fails under, since the flat object is served to clients on all of them.
- Matching is by **object**, `<package>_<version>`, not by package name. A package can have a safe flat binary at one version and an unsafe one at another; the old code deleted both.
- The explicit `[pkg ...]` override is unchanged in behaviour and still matches by package name, which is what you want when naming a package by hand.
- The refusal guard moves with the selector. An empty result now means the slot's flat-safety backfill never ran — the exact state rhel8 was found in today — and pruning nothing while reporting success would have hidden it.

## Not changed

Still a dry run unless `PRUNE_APPLY=yes`, and still refuses to delete an object whose package CRAN no longer ships, since there would be no source to fall back to.

## Ordering note

A prune converts each deleted binary into a source fallback. bincraft #131 fixes source fallbacks of *archived* versions being advertised as binaries, which breaks `uvr` outright. That should land before any large prune, or this will manufacture new instances of it.

Reviewed-on: #211
2026-09-09 15:01:21 +00:00
..
patches fix(patches): support RcppParallel 6.2.1 2026-08-30 14:26:37 +00:00
tests feat(rebuild): shard the weekly rebuild and make each shard resumable (#163) 2026-08-12 08:30:29 +00:00
archive-missed-pkgs.R feat: R-minor-sensitive binary builds (full + iterative) (#84) 2026-06-14 08:04:40 +00:00
backfill-abi-classification.R feat(abi): backfill classifier verdicts for pre-per-minor packages (#199) 2026-09-04 10:34:49 +00:00
backfill-flat-safety.R fix(abi): enumerate the flat slot from S3, not through the edge (#203) 2026-09-05 09:41:57 +00:00
build-all.R fix(build): strip the s3 scheme so per-minor objects reach their pass (#192) 2026-09-02 07:11:10 +00:00
build-one.R feat: patch registry + wiring for per-package patching (#103) 2026-06-30 08:50:19 +00:00
check-cdn-cache.sh add alpine321 to scripts 2024-12-29 10:18:55 +01:00
check-NA.R feat: R-minor-sensitive binary builds (full + iterative) (#84) 2026-06-14 08:04:40 +00:00
debug-packages-writing.R feat: R-minor-sensitive binary builds (full + iterative) (#84) 2026-06-14 08:04:40 +00:00
dedupe-audit-issue.R fix(audit): replace arch subsection in place instead of appending duplicates (#138) 2026-07-21 08:51:23 +00:00
detect-duplicates.R feat: R-minor-sensitive binary builds (full + iterative) (#84) 2026-06-14 08:04:40 +00:00
excluded-packages.json feat: R-minor-sensitive binary builds (full + iterative) (#84) 2026-06-14 08:04:40 +00:00
failing-builds-classify.R feat(local): aggregate blocked-on-dependency reporting by dependency (#131) 2026-07-16 21:24:03 +00:00
failing-builds-report.R feat(local): detect dependency-cascade failures generally, not just RcppParallel (#128) 2026-07-16 08:23:54 +00:00
fetch-rebuild-packages-from-issue.R fix(audit): replace arch subsection in place instead of appending duplicates (#138) 2026-07-21 08:51:23 +00:00
find-R-api-packages.sh chore(local): add S3 migration and CRAN-source helper scripts 2026-06-14 13:02:48 +02:00
install-bincraft.R refactor: migrate package installation from pak to uvr (#147) 2026-07-31 12:19:26 +00:00
label-removed-cran-packages.R feat: R-minor-sensitive binary builds (full + iterative) (#84) 2026-06-14 08:04:40 +00:00
last-processed-by-platform.R feat: R-minor-sensitive binary builds (full + iterative) (#84) 2026-06-14 08:04:40 +00:00
list-unsafe-flat-objects.R fix(abi): do not error on the nothing-to-repair path (#208) 2026-09-09 10:55:15 +00:00
migrate-s3-hetzner-to-backblaze.sh chore(local): add S3 migration and CRAN-source helper scripts 2026-06-14 13:02:48 +02:00
missing-cran-packages-db.R feat: R-minor-sensitive binary builds (full + iterative) (#84) 2026-06-14 08:04:40 +00:00
missing-cran-packages.R feat: R-minor-sensitive binary builds (full + iterative) (#84) 2026-06-14 08:04:40 +00:00
missing-packages-in-index.R feat: R-minor-sensitive binary builds (full + iterative) (#84) 2026-06-14 08:04:40 +00:00
packages-to-build.R fix(build): scope the errored-package filter to the snapshot's R minor (#194) 2026-09-03 13:37:04 +00:00
packages-without-any-binary.R feat: R-minor-sensitive binary builds (full + iterative) (#84) 2026-06-14 08:04:40 +00:00
proposal-tracking-lib.R feat(local): aggregate blocked-on-dependency reporting by dependency (#131) 2026-07-16 21:24:03 +00:00
proposal-tracking.R feat(local): aggregate blocked-on-dependency reporting by dependency (#131) 2026-07-16 21:24:03 +00:00
propose-patches.R feat(local): aggregate blocked-on-dependency reporting by dependency (#131) 2026-07-16 21:24:03 +00:00
prune-stale-flat-binaries.R fix(abi): prune the objects recorded broken, not every risky package (#211) 2026-09-09 15:01:21 +00:00
query-pkgs-without-old-versions.R chore(local): add S3 migration and CRAN-source helper scripts 2026-06-14 13:02:48 +02:00
r-minor-helpers.R refactor: migrate package installation from pak to uvr (#147) 2026-07-31 12:19:26 +00:00
rebuild-missing-helpers.R feat(rebuild): shard the weekly rebuild and make each shard resumable (#163) 2026-08-12 08:30:29 +00:00
rebuild-missing.R feat(rebuild): shard the weekly rebuild and make each shard resumable (#163) 2026-08-12 08:30:29 +00:00
repair-built-stamp.R fix(index): add a slot repair for a broken Built stamp and retire alpine 3.21 (#150) 2026-08-07 09:15:04 +00:00
test-package-loading.R refactor: migrate package installation from pak to uvr (#147) 2026-07-31 12:19:26 +00:00
trial-build-patch.R fix(local): make trial-build-patch.R detect non-throwing build failures (#134) 2026-07-18 08:37:04 +00:00
trial-build-registry.R fix(local): make the trial-build gate detect non-throwing build failures (#130) 2026-07-16 08:24:03 +00:00
uvr-install.sh fix(rebuild): harden split workflow setup (#164) 2026-08-13 13:38:28 +00:00
validate-patches.R feat(local): auto-propose registry patches and track the feedback loop (#117) 2026-07-14 15:03:24 +00:00
verify-repo-routing.R feat(ci): verify what clients actually receive from every published slot (#209) 2026-09-09 12:52:16 +00:00
weekly-missing-binaries-audit.R fix(audit): count a source fallback as a missing binary (#157) 2026-08-09 10:37:41 +00:00