Repository files (latest commit first)

Filename	Latest commit message	Latest commit date
pat-s 71f3f0c601 fix(audit): replace arch subsection in place instead of appending duplicates (#138) ... ## Problem A fresh `weekly-audit-missing` run followed by `weekly-rebuild-missing` reported that almost every package "already exists in the remote bucket", even though the audit had just flagged them as missing. Root cause: the audit's Forgejo-issue update matched the existing `### <arch>` subsection by its **bare** header (`### arm64`) while writing headers with a ` (N missing, M to rebuild)` suffix. The equality test never matched, so every run **appended** a new block instead of replacing the old one. Issue #63 had accumulated 38 arch subsections under `## alpine-323` where 2 are expected (75 total across the alpine platforms; body ~77k lines). `fetch-rebuild-packages-from-issue.R` reads the **first** matching block, which was the oldest snapshot. So the rebuild kept re-checking a months-old list (180 packages, mostly already built), while the genuinely-missing packages, ~1921 for alpine-323/arm64 in the freshest block, were never fed to the rebuild and the backlog grew silently. ## Changes - **`local/weekly-missing-binaries-audit.R`**: match arch subsections by prefix (`^### <arch>( |$)`) and remove **all** blocks for that arch before writing one fresh block. Accumulation now self-heals on every run. - **`local/dedupe-audit-issue.R`** (new): one-off cleanup that collapses each `## platform` section to the freshest block per arch across the three OS-family issues. Supports `DRY_RUN=1`. - **`local/fetch-rebuild-packages-from-issue.R`**: prefer the audit's freshly-written RDS (overwritten each run, immune to issue-body drift), falling back to issue parsing when absent. ## Validation Simulated the dedupe logic against the live #63 body: **75 → 8** arch subsections, body 77k → 28k lines, and the kept alpine-323/arm64 block correctly resolves to `GARCH.X (3.0)` (the stale first block held `2.0`). ## Follow-ups (not in this PR) - `alpine-321` is audited but has no row in the rebuild matrix (7,230 missing, never rebuilt). - An `alpine-324` section exists in the issue but is in neither matrix. Reviewed-on: #138		2026-07-21 08:51:23 +00:00
..
patches	fix(patches): widen RcppParallel system-tbb scope to all oneTBB-2021 platforms (#137)	2026-07-20 20:59:47 +00:00
tests	feat(local): aggregate blocked-on-dependency reporting by dependency (#131)	2026-07-16 21:24:03 +00:00
archive-missed-pkgs.R	feat: R-minor-sensitive binary builds (full + iterative) (#84)	2026-06-14 08:04:40 +00:00
build-all.R	fix(ci): bound pkgcache _metadata growth to stop macmini disk-fill (#110)	2026-07-13 09:31:29 +00:00
build-one.R	feat: patch registry + wiring for per-package patching (#103)	2026-06-30 08:50:19 +00:00
check-cdn-cache.sh	add alpine321 to scripts	2024-12-29 10:18:55 +01:00
check-NA.R	feat: R-minor-sensitive binary builds (full + iterative) (#84)	2026-06-14 08:04:40 +00:00
debug-packages-writing.R	feat: R-minor-sensitive binary builds (full + iterative) (#84)	2026-06-14 08:04:40 +00:00
dedupe-audit-issue.R	fix(audit): replace arch subsection in place instead of appending duplicates (#138)	2026-07-21 08:51:23 +00:00
detect-duplicates.R	feat: R-minor-sensitive binary builds (full + iterative) (#84)	2026-06-14 08:04:40 +00:00
excluded-packages.json	feat: R-minor-sensitive binary builds (full + iterative) (#84)	2026-06-14 08:04:40 +00:00
failing-builds-classify.R	feat(local): aggregate blocked-on-dependency reporting by dependency (#131)	2026-07-16 21:24:03 +00:00
failing-builds-report.R	feat(local): detect dependency-cascade failures generally, not just RcppParallel (#128)	2026-07-16 08:23:54 +00:00
fetch-rebuild-packages-from-issue.R	fix(audit): replace arch subsection in place instead of appending duplicates (#138)	2026-07-21 08:51:23 +00:00
find-R-api-packages.sh	chore(local): add S3 migration and CRAN-source helper scripts	2026-06-14 13:02:48 +02:00
install-bincraft.R	chore: resolve latest bincraft release dynamically (no hardcoded pins) (#107)	2026-07-01 08:10:02 +00:00
label-removed-cran-packages.R	feat: R-minor-sensitive binary builds (full + iterative) (#84)	2026-06-14 08:04:40 +00:00
last-processed-by-platform.R	feat: R-minor-sensitive binary builds (full + iterative) (#84)	2026-06-14 08:04:40 +00:00
migrate-s3-hetzner-to-backblaze.sh	chore(local): add S3 migration and CRAN-source helper scripts	2026-06-14 13:02:48 +02:00
missing-cran-packages-db.R	feat: R-minor-sensitive binary builds (full + iterative) (#84)	2026-06-14 08:04:40 +00:00
missing-cran-packages.R	feat: R-minor-sensitive binary builds (full + iterative) (#84)	2026-06-14 08:04:40 +00:00
missing-packages-in-index.R	feat: R-minor-sensitive binary builds (full + iterative) (#84)	2026-06-14 08:04:40 +00:00
packages-to-build.R	feat: R-minor-sensitive binary builds (full + iterative) (#84)	2026-06-14 08:04:40 +00:00
packages-without-any-binary.R	feat: R-minor-sensitive binary builds (full + iterative) (#84)	2026-06-14 08:04:40 +00:00
proposal-tracking-lib.R	feat(local): aggregate blocked-on-dependency reporting by dependency (#131)	2026-07-16 21:24:03 +00:00
proposal-tracking.R	feat(local): aggregate blocked-on-dependency reporting by dependency (#131)	2026-07-16 21:24:03 +00:00
propose-patches.R	feat(local): aggregate blocked-on-dependency reporting by dependency (#131)	2026-07-16 21:24:03 +00:00
query-pkgs-without-old-versions.R	chore(local): add S3 migration and CRAN-source helper scripts	2026-06-14 13:02:48 +02:00
r-minor-helpers.R	fix(ci): bound pkgcache _metadata growth to stop macmini disk-fill (#110)	2026-07-13 09:31:29 +00:00
test-package-loading.R	chore(local): add S3 migration and CRAN-source helper scripts	2026-06-14 13:02:48 +02:00
trial-build-patch.R	fix(local): make trial-build-patch.R detect non-throwing build failures (#134)	2026-07-18 08:37:04 +00:00
trial-build-registry.R	fix(local): make the trial-build gate detect non-throwing build failures (#130)	2026-07-16 08:24:03 +00:00
validate-patches.R	feat(local): auto-propose registry patches and track the feedback loop (#117)	2026-07-14 15:03:24 +00:00
weekly-missing-binaries-audit.R	fix(audit): replace arch subsection in place instead of appending duplicates (#138)	2026-07-21 08:51:23 +00:00