Repository files (latest commit first)

Filename	Latest commit message	Latest commit date
pat-s 0703969088 fix(audit): count a source fallback as a missing binary (#157) ... ## Problem The audit's definition of "missing" was `missing_dt <- cran_dt[!s3_dt]`, where `s3_dt` came from listing the bucket. But an object being present does not mean a binary was built: when a build fails, bincraft publishes the CRAN source tarball in its place so the package stays installable, and a listing cannot tell the two apart. So every failed build looked done. On `amd64/alpine324` that is 13 547 of 24 134 comparable objects (56%) — all CRAN sources from the June 2026 bootstrap, none ever reported here, so `weekly-rebuild-missing` never retried any of them. `amd64/noble` sits at 4.6% for comparison. ## What this changes Reads the slot's own `PACKAGES` index instead of listing the bucket, and counts only records carrying a `Built` stamp. bincraft writes that stamp only for what it actually built (rpkgs/bincraft#105), so the index answers the question a listing cannot. Side effects of reading the index rather than the bucket: - the audit reports how many records the index holds and how many are served as source, so the gap is visible in the log - `s3fs` is no longer used, so the audit needs no B2 credentials - an object present but absent from the index is now counted as missing, which is correct: clients only see the index ## Sequencing This is inert until the matching bincraft change ships and a slot is re-indexed. A slot last indexed by an older bincraft carries `Built` on every record, including the fallbacks, so the audit reports exactly what it does today. Verified against the live indices: ``` amd64/alpine324: records=24152 built=24152 source-served=0 amd64/noble: records=24681 built=24681 source-served=0 ``` After a re-index those `source-served` counts become the real ones, and the packages behind them start appearing in issue #63 and getting rebuilt. Reviewed-on: #157		2026-08-09 10:37:41 +00:00
..
patches	fix(patches): force RcppParallel to use its bundled oneTBB (#146)	2026-07-31 09:48:41 +00:00
tests	refactor: migrate package installation from pak to uvr (#147)	2026-07-31 12:19:26 +00:00
archive-missed-pkgs.R	feat: R-minor-sensitive binary builds (full + iterative) (#84)	2026-06-14 08:04:40 +00:00
build-all.R	refactor: migrate package installation from pak to uvr (#147)	2026-07-31 12:19:26 +00:00
build-one.R	feat: patch registry + wiring for per-package patching (#103)	2026-06-30 08:50:19 +00:00
check-cdn-cache.sh	add alpine321 to scripts	2024-12-29 10:18:55 +01:00
check-NA.R	feat: R-minor-sensitive binary builds (full + iterative) (#84)	2026-06-14 08:04:40 +00:00
debug-packages-writing.R	feat: R-minor-sensitive binary builds (full + iterative) (#84)	2026-06-14 08:04:40 +00:00
dedupe-audit-issue.R	fix(audit): replace arch subsection in place instead of appending duplicates (#138)	2026-07-21 08:51:23 +00:00
detect-duplicates.R	feat: R-minor-sensitive binary builds (full + iterative) (#84)	2026-06-14 08:04:40 +00:00
excluded-packages.json	feat: R-minor-sensitive binary builds (full + iterative) (#84)	2026-06-14 08:04:40 +00:00
failing-builds-classify.R	feat(local): aggregate blocked-on-dependency reporting by dependency (#131)	2026-07-16 21:24:03 +00:00
failing-builds-report.R	feat(local): detect dependency-cascade failures generally, not just RcppParallel (#128)	2026-07-16 08:23:54 +00:00
fetch-rebuild-packages-from-issue.R	fix(audit): replace arch subsection in place instead of appending duplicates (#138)	2026-07-21 08:51:23 +00:00
find-R-api-packages.sh	chore(local): add S3 migration and CRAN-source helper scripts	2026-06-14 13:02:48 +02:00
install-bincraft.R	refactor: migrate package installation from pak to uvr (#147)	2026-07-31 12:19:26 +00:00
label-removed-cran-packages.R	feat: R-minor-sensitive binary builds (full + iterative) (#84)	2026-06-14 08:04:40 +00:00
last-processed-by-platform.R	feat: R-minor-sensitive binary builds (full + iterative) (#84)	2026-06-14 08:04:40 +00:00
migrate-s3-hetzner-to-backblaze.sh	chore(local): add S3 migration and CRAN-source helper scripts	2026-06-14 13:02:48 +02:00
missing-cran-packages-db.R	feat: R-minor-sensitive binary builds (full + iterative) (#84)	2026-06-14 08:04:40 +00:00
missing-cran-packages.R	feat: R-minor-sensitive binary builds (full + iterative) (#84)	2026-06-14 08:04:40 +00:00
missing-packages-in-index.R	feat: R-minor-sensitive binary builds (full + iterative) (#84)	2026-06-14 08:04:40 +00:00
packages-to-build.R	refactor: migrate package installation from pak to uvr (#147)	2026-07-31 12:19:26 +00:00
packages-without-any-binary.R	feat: R-minor-sensitive binary builds (full + iterative) (#84)	2026-06-14 08:04:40 +00:00
proposal-tracking-lib.R	feat(local): aggregate blocked-on-dependency reporting by dependency (#131)	2026-07-16 21:24:03 +00:00
proposal-tracking.R	feat(local): aggregate blocked-on-dependency reporting by dependency (#131)	2026-07-16 21:24:03 +00:00
propose-patches.R	feat(local): aggregate blocked-on-dependency reporting by dependency (#131)	2026-07-16 21:24:03 +00:00
query-pkgs-without-old-versions.R	chore(local): add S3 migration and CRAN-source helper scripts	2026-06-14 13:02:48 +02:00
r-minor-helpers.R	refactor: migrate package installation from pak to uvr (#147)	2026-07-31 12:19:26 +00:00
repair-built-stamp.R	fix(index): add a slot repair for a broken Built stamp and retire alpine 3.21 (#150)	2026-08-07 09:15:04 +00:00
test-package-loading.R	refactor: migrate package installation from pak to uvr (#147)	2026-07-31 12:19:26 +00:00
trial-build-patch.R	fix(local): make trial-build-patch.R detect non-throwing build failures (#134)	2026-07-18 08:37:04 +00:00
trial-build-registry.R	fix(local): make the trial-build gate detect non-throwing build failures (#130)	2026-07-16 08:24:03 +00:00
uvr-install.sh	chore(deps): update dependency nbafrank/uvr to v0.4.5	2026-08-04 02:32:01 +00:00
validate-patches.R	feat(local): auto-propose registry patches and track the feedback loop (#117)	2026-07-14 15:03:24 +00:00
weekly-missing-binaries-audit.R	fix(audit): count a source fallback as a missing binary (#157)	2026-08-09 10:37:41 +00:00