make repo public

2019-03-25 12:59:14 -04:00 · 2019-03-25 12:59:14 -04:00 · bd3505e426
commit bd3505e426
1 changed files with 5447 additions and 0 deletions
--- a/builder/Dockerfile.centos-6
+++ b/builder/Dockerfile.centos-6
@ -0,0 +1,206 @@
+FROM centos:centos6
+
+ENV OS_IDENTIFIER centos-6
+
+RUN yum -y update \
+    && yum -y install epel-release \
+    && yum clean all
+
+RUN yum -y update \
+    && yum -y install \
+    atlas-devel \
+    blas-devel \
+    bzip2-devel \
+    cairo-devel \
+    gcc-c++ \
+    gcc-gfortran \
+    gcc-objc \
+    glibc-devel \
+    groff \
+    java-1.8.0-openjdk-devel \
+    krb5-devel \
+    krb5-libs \
+    lapack-devel \
+    less \
+    libICE-devel \
+    libSM-devel \
+    libX11-devel \
+    libXmu-devel \
+    libXt-devel \
+    libgssapi-devel \
+    libicu-devel \
+    libidn-devel \
+    libjpeg-devel \
+    libmetalink-devel \
+    libpng-devel \
+    libssh2-devel \
+    libtiff-devel \
+    ncurses-devel \
+    openldap \
+    openldap-devel \
+    openssh-clients \
+    openssh-server \
+    openssl-devel \
+    pango-devel \
+    pcre-devel \
+    pcre2-devel \
+    pkgconfig \
+    python \
+    python-pip \
+    readline-devel \
+    stunnel \
+    tcl-devel \
+    tex \
+    texinfo-tex \
+    texlive-latex \
+    tk-devel \
+    valgrind-devel \
+    wget \
+    xz-devel \
+    zlib-devel \
+    && yum clean all
+
+RUN pip install awscli
+
+RUN chmod 0777 /opt
+
+# Compile newer versions of zlib, bzip2, xz, pcre, and curl.
+#
+# Several compression libraries that were at one time included in R-devel have been removed.
+# Instead of providing these libraries, R-devel assumes they are pre-installed. On RedHat 6,
+# this results in build errors when zlib, bzip, pcre, curl, and xz are required. These
+# libraries must be downloaded and compiled before building R-devel. Reference:
+# http://pj.freefaculty.org/blog/?p=315
+#
+# It's also import to build the static versions of these libraries and link them
+# statically when building R. This allows us to use the R binaries we build on
+# another CentOS/RHEL 6 OS without updating the same five libraries.
+# For more info, see the "R.spec" RPM spec file in the EPEL source archive at:
+# http://download-ib01.fedoraproject.org/pub/epel/7/SRPMS/Packages/r/R-3.5.2-2.el7.src.rpm
+# (search for "zlibhack" in R.spec).
+#
+# First, reate a directory for the additional libraries.
+RUN mkdir -p /tmp/extra
+
+# zlib 1.2.8
+#
+# Note: zlib 1.2.11 works fine for all R versions except 3.3.0, 3.3.1, and 3.3.2,
+# so I went with an older version (1.2.8) to accommodate the flaky R versions. See the
+# following note on https://www.r-statistics.com/2017/03/r-3-3-3-is-released/:
+#
+#   The configure check for the zlib version is now robust to versions longer than 5 characters,
+#   including 1.2.11.
+#
+ARG ZLIB_VERSION=1.2.8
+ARG ZLIB_DOWNLOAD_SHA256=36658cb768a54c1d4dec43c3116c27ed893e88b02ecfcb44f2166f9c0b7f2a0d
+RUN curl -fsSL "https://zlib.net/fossils/zlib-${ZLIB_VERSION}.tar.gz" -o zlib.tar.gz \
+    && echo "$ZLIB_DOWNLOAD_SHA256  zlib.tar.gz" | sha256sum -c - \
+    && CWD=`pwd` && TMP=`mktemp -d` \
+    && tar -C $TMP -zxvf zlib.tar.gz \
+    && cd $TMP/zlib* \
+    && ./configure --prefix=/tmp/extra --static \
+    && make CFLAGS="-fpic -fPIC" \
+    && make install \
+    && cd $CWD && rm -rf $TMP && rm -rf zlib.tar.gz
+
+# bzip2 1.0.6
+ARG BZIP2_VERSION=1.0.6
+ARG BZIP2_DOWNLOAD_SHA1=3f89f861209ce81a6bab1fd1998c0ef311712002
+RUN curl -fsSL "https://sourceforge.net/projects/bzip2/files/bzip2-{$BZIP2_VERSION}.tar.gz/download" -o bzip2.tar.gz \
+    && echo "$BZIP2_DOWNLOAD_SHA1  bzip2.tar.gz" | sha1sum -c - \
+    && CWD=`pwd` && TMP=`mktemp -d` \
+    && tar -C $TMP -zxvf bzip2.tar.gz \
+    && cd $TMP/bzip2* \
+    && make libbz2.a CFLAGS="-D_FILE_OFFSET_BITS=64 -fpic -fPIC" PREFIX=/tmp/extra \
+    && make install PREFIX=/tmp/extra \
+    && cd $CWD && rm -rf $TMP && rm -rf bzip2.tar.gz
+
+# xz 5.2.4 (for lzma libraries)
+ARG XZ_VERSION=5.2.4
+ARG XZ_DOWNLOAD_SHA1=63ca380029597b951ce9afc6dec28f44f70bb5bd
+RUN curl -fsSL "https://sourceforge.net/projects/lzmautils/files/xz-{$XZ_VERSION}.tar.gz/download" -o xz.tar.gz \
+    && echo "$XZ_DOWNLOAD_SHA1  xz.tar.gz" | sha1sum -c - \
+    && CWD=`pwd` && TMP=`mktemp -d` \
+    && tar -C $TMP -zxvf xz.tar.gz \
+    && cd $TMP/xz* \
+    && CFLAGS="-fpic -fPIC" ./configure --enable-static=yes --enable-shared=no --prefix=/tmp/extra \
+    && make -j8 \
+    && make install \
+    && cd $CWD && rm -rf $TMP && rm -rf xz.tar.gz
+
+# PCRE 8.42
+#
+# The PCRE library provides PGP signatures for verifying downloads. Originally, I tried to do some
+# PGP validation in the Dockerfile, but I ran into trouble with flaky key servers. To streamline
+# things, I verified the download manually and then generated a sha256 checksum with the following
+# commands:
+#   gpg --recv-key FB0F43D8
+#   gpg pcre-8.42.tar.gz.sig
+#   sha256sum pcre-8.42.tar.gz
+#
+ARG PCRE_VERSION=8.42
+ARG PCRE_DOWNLOAD_SHA256=69acbc2fbdefb955d42a4c606dfde800c2885711d2979e356c0636efde9ec3b5
+RUN curl -fsSL "https://ftp.pcre.org/pub/pcre/pcre-{$PCRE_VERSION}.tar.gz" -o pcre.tar.gz \
+    && echo "$PCRE_DOWNLOAD_SHA256  pcre.tar.gz" | sha256sum -c - \
+    && CWD=`pwd` && TMP=`mktemp -d` \
+    && tar -C $TMP -zxvf pcre.tar.gz \
+    && cd $TMP/pcre* \
+    && mkdir -p /tmp/extra \
+    && CFLAGS="-fpic -fPIC" ./configure --enable-static=yes --enable-shared=no --enable-utf --enable-unicode-properties --enable-pcre8 --enable-pcre16 --enable-pcre32 --prefix=/tmp/extra \
+    && make -j8 \
+    && make install \
+    && cd $CWD && rm -rf $TMP && rm -rf pcre.tar.gz
+
+# Curl 7.63.0
+#
+# The curl library provides PGP signatures for verifying downloads. Originally, I tried to do some
+# PGP validation in the Dockerfile, but I ran into trouble with flaky key servers. To streamline
+# things, I verified the download manually and then generated a sha256 checksum with the following
+# commands:
+#   gpg --recv-key B71E12C2
+#   gpg curl-7.63.0.tar.gz.asc
+#   sha256sum curl-7.63.0.tar.gz
+#
+ARG CURL_VERSION=7.63.0
+ARG CURL_DOWNLOAD_SHA256=d483b89062832e211c887d7cf1b65c902d591b48c11fe7d174af781681580b41
+RUN curl -fsSL "https://curl.haxx.se/download/curl-{$CURL_VERSION}.tar.gz" -o curl.tar.gz \
+    && echo "$CURL_DOWNLOAD_SHA256  curl.tar.gz" | sha256sum -c - \
+    && CWD=`pwd` && TMP=`mktemp -d` \
+    && tar -C $TMP -zxvf curl.tar.gz \
+    && cd $TMP/curl* \
+    && CFLAGS="-fpic -fPIC" ./configure --enable-static=yes --enable-shared=no --with-ssl --enable-ipv6 --with-gssapi --with-libidn --enable-ldaps --with-libssh2 --enable-threaded-resolver --with-libmetalink --prefix=/tmp/extra \
+    && make V=1 \
+    && make install \
+    && cd $CWD && rm -rf $TMP && rm -rf curl.tar.gz
+
+# Compiler and linker flags for statically linking updated libraries
+ENV CFLAGS="-fpic -fPIC -I/tmp/extra/include"
+ENV CURL_CFLAGS='-DCURL_STATICLIB -I/tmp/extra/include'
+ENV CURL_CPPFLAGS='-DCURL_STATICLIB -I/tmp/extra/include'
+
+# Configure flags for CentOS 6 that don't use the defaults in build.sh
+ENV CONFIGURE_OPTIONS="\
+    --enable-R-shlib \
+    --with-tcltk \
+    --enable-memory-profiling \
+    --with-x \
+    --with-system-valgrind-headers \
+    --with-tcl-config=/usr/lib64/tclConfig.sh \
+    --with-tk-config=/usr/lib64/tkConfig.sh \
+    --enable-BLAS-shlib \
+    --enable-prebuilt-html"
+
+# RHEL 6 doesn't have texi2any, so use makeinfo.
+ENV MAKEINFO=makeinfo
+
+# RHEL 6 doesn't have the inconsolata font, so override the defaults.
+ENV R_RD4PDF="times,hyper"
+
+# Copy a script to help set up the environment
+COPY env_centos6.sh ./env.sh
+
+COPY build.sh .
+
+# Copy a script to clean up after the build
+COPY clean_centos6.sh ./clean.sh
+ENTRYPOINT ./build.sh