From bd3505e426bf62f09eccd3ba82c1e6c2c07b7d9e Mon Sep 17 00:00:00 2001 From: Steve Nolen Date: Mon, 25 Mar 2019 12:59:14 -0400 Subject: [PATCH] make repo public --- .gitignore | 4 + Jenkinsfile | 42 + LICENSE | 674 +++++++ Makefile | 35 + README.md | 81 + builder/Dockerfile.centos-6 | 206 ++ builder/Dockerfile.centos-7 | 77 + builder/Dockerfile.debian-9 | 17 + builder/Dockerfile.opensuse-15 | 82 + builder/Dockerfile.opensuse-42 | 86 + builder/Dockerfile.ubuntu-1604 | 17 + builder/Dockerfile.ubuntu-1804 | 17 + builder/build.sh | 107 + builder/clean_centos6.sh | 14 + builder/docker-compose.yml | 80 + builder/env_centos6.sh | 14 + handler.py | 131 ++ jenkins/Dockerfile | 24 + package-lock.json | 3372 ++++++++++++++++++++++++++++++++ package.json | 11 + requirements.txt | 14 + serverless-resources.yml | 240 +++ serverless-stepf.yml | 38 + serverless.yml | 64 + 24 files changed, 5447 insertions(+) create mode 100644 .gitignore create mode 100644 Jenkinsfile create mode 100644 LICENSE create mode 100644 Makefile create mode 100644 README.md create mode 100644 builder/Dockerfile.centos-6 create mode 100644 builder/Dockerfile.centos-7 create mode 100644 builder/Dockerfile.debian-9 create mode 100644 builder/Dockerfile.opensuse-15 create mode 100644 builder/Dockerfile.opensuse-42 create mode 100644 builder/Dockerfile.ubuntu-1604 create mode 100644 builder/Dockerfile.ubuntu-1804 create mode 100755 builder/build.sh create mode 100755 builder/clean_centos6.sh create mode 100644 builder/docker-compose.yml create mode 100755 builder/env_centos6.sh create mode 100644 handler.py create mode 100644 jenkins/Dockerfile create mode 100644 package-lock.json create mode 100644 package.json create mode 100644 requirements.txt create mode 100644 serverless-resources.yml create mode 100644 serverless-stepf.yml create mode 100644 serverless.yml diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..23d5c71 --- /dev/null +++ b/.gitignore @@ -0,0 +1,4 @@ +R-* +builder/integration/** +node_modules +serverless-custom.yml diff --git a/Jenkinsfile b/Jenkinsfile new file mode 100644 index 0000000..b808e58 --- /dev/null +++ b/Jenkinsfile @@ -0,0 +1,42 @@ +pipeline { + agent none + environment { + HOME = "." + } + options { + ansiColor('xterm') + } + stages { + stage('build images') { + agent { label 'docker-4x' } + steps { + sh 'make docker-build' + } + } + stage('push images') { + agent { label 'docker-4x' } + when { + branch 'master' + } + steps { + sh 'make docker-push' + } + } + stage('deploy') { + agent { + dockerfile { + dir 'jenkins' + label 'docker-4x' + additionalBuildArgs '--build-arg DOCKER_GID=$(stat -c %g /var/run/docker.sock) --build-arg JENKINS_UID=$(id -u jenkins) --build-arg JENKINS_GID=$(id -g jenkins)' + args '-v /var/run/docker.sock:/var/run/docker.sock --group-add docker' + } + } + when { + branch 'master' + } + steps { + sh 'make serverless-deploy' + } + } + } +} diff --git a/LICENSE b/LICENSE new file mode 100644 index 0000000..f288702 --- /dev/null +++ b/LICENSE @@ -0,0 +1,674 @@ + GNU GENERAL PUBLIC LICENSE + Version 3, 29 June 2007 + + Copyright (C) 2007 Free Software Foundation, Inc. + Everyone is permitted to copy and distribute verbatim copies + of this license document, but changing it is not allowed. + + Preamble + + The GNU General Public License is a free, copyleft license for +software and other kinds of works. + + The licenses for most software and other practical works are designed +to take away your freedom to share and change the works. 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Limitation of Liability. + + IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING +WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS +THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY +GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE +USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF +DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD +PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), +EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF +SUCH DAMAGES. + + 17. Interpretation of Sections 15 and 16. + + If the disclaimer of warranty and limitation of liability provided +above cannot be given local legal effect according to their terms, +reviewing courts shall apply local law that most closely approximates +an absolute waiver of all civil liability in connection with the +Program, unless a warranty or assumption of liability accompanies a +copy of the Program in return for a fee. + + END OF TERMS AND CONDITIONS + + How to Apply These Terms to Your New Programs + + If you develop a new program, and you want it to be of the greatest +possible use to the public, the best way to achieve this is to make it +free software which everyone can redistribute and change under these terms. + + To do so, attach the following notices to the program. It is safest +to attach them to the start of each source file to most effectively +state the exclusion of warranty; and each file should have at least +the "copyright" line and a pointer to where the full notice is found. + + + Copyright (C) + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + +Also add information on how to contact you by electronic and paper mail. + + If the program does terminal interaction, make it output a short +notice like this when it starts in an interactive mode: + + Copyright (C) + This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'. + This is free software, and you are welcome to redistribute it + under certain conditions; type `show c' for details. + +The hypothetical commands `show w' and `show c' should show the appropriate +parts of the General Public License. Of course, your program's commands +might be different; for a GUI interface, you would use an "about box". + + You should also get your employer (if you work as a programmer) or school, +if any, to sign a "copyright disclaimer" for the program, if necessary. +For more information on this, and how to apply and follow the GNU GPL, see +. + + The GNU General Public License does not permit incorporating your program +into proprietary programs. If your program is a subroutine library, you +may consider it more useful to permit linking proprietary applications with +the library. If this is what you want to do, use the GNU Lesser General +Public License instead of this License. But first, please read +. diff --git a/Makefile b/Makefile new file mode 100644 index 0000000..5bc5ec4 --- /dev/null +++ b/Makefile @@ -0,0 +1,35 @@ +PLATFORMS := ubuntu-1604 ubuntu-1804 debian-9 centos-6 centos-7 opensuse-42 opensuse-15 + +npm-install: + npm install + +docker-build: + @cd builder && docker-compose build --parallel + +AWS_ACCOUNT_ID:=$(shell aws sts get-caller-identity --output text --query 'Account') +AWS_REGION := us-east-1 +docker-push: ecr-login docker-build + @for platform in $(PLATFORMS) ; do \ + docker tag r-builds:$$platform $(AWS_ACCOUNT_ID).dkr.ecr.$(AWS_REGION).amazonaws.com/r-builds:$$platform; \ + docker push $(AWS_ACCOUNT_ID).dkr.ecr.$(AWS_REGION).amazonaws.com/r-builds:$$platform; \ + done + +docker-down: + @cd builder && docker-compose down + +docker-build-r: docker-build + @cd builder && docker-compose up + +docker-shell-r-env: + @cd builder && docker-compose run --entrypoint /bin/bash ubuntu-1604 + +ecr-login: + @eval $(shell aws ecr get-login --no-include-email --region $(AWS_REGION)) + +fetch-serverless-custom-file: + aws s3 cp s3://rstudio-serverless/serverless/r-builds/serverless-custom.yml . + +serverless-deploy: npm-install fetch-serverless-custom-file + serverless deploy --stage dev + +.PHONY: docker-build docker-push docker-down docker-build-package docker-shell-package-env ecr-login npm-install fetch-serverless-custom-file serverless-deploy diff --git a/README.md b/README.md new file mode 100644 index 0000000..141181c --- /dev/null +++ b/README.md @@ -0,0 +1,81 @@ +# r-builds + +The environment which produces R builds obtainable from: https://cdn.rstudio.com/r/versions.json + +## Adding a new platform. + +### Dockerfile + +Create a `builder/Dockerfile.platform-version` (where `platform-version` is `ubuntu-1604` or `centos-74`, etc.) This file must contain four major tasks: + +1. an `OS_IDENTIFIER` env with the `platform-version`. +2. a step which ensures the R source build dependencies are installed +3. The `awscli`, most likely installed via `pip` for uploading tarballs to S3 +4. `COPY` and `ENTRYPOINT` for the `build.sh` file in `builder/`. + +### docker-compose.yml + +A new service in the docker-compose file named according to the `platform-version` and containing the proper entries: + +``` +command: ./build.sh +environment: + - R_VERSION=${R_VERSION} # for testing out R builds locally + - LOCAL_STORE=/tmp/output # ensures that output tarballs are persisted locally +build: + context: . + dockerfile: Dockerfile.debian-9 +image: r-builds:debian-9 +volumes: + - ./integration/tmp:/tmp/output # path to output tarballs +``` + +### Job definition + +IN `serverless-resources.yml` you'll need to add a job definition that points to the ECR image. + +``` +rBuildsBatchJobDefinitionDebian9: + Type: AWS::Batch::JobDefinition + Properties: + Type: container + ContainerProperties: + Command: + - ./build.sh + Vcpus: 4 + Memory: 4096 + JobRoleArn: + "Fn::GetAtt": [ rBuildsEcsTaskIamRole, Arn ] + Image: #{AWS::AccountId}.dkr.ecr.#{AWS::Region}.amazonaws.com/r-builds:debian-9 +``` + +### Environment variables in the serverless.yml functions. + +The serverless functions which trigger R builds need to be informed of new platforms. + +1. Add a `JOB_DEFINITION_ARN_PlatformVersion` env variable with a ref to the Job definition above. +2. Append the `platform-version` to `SUPPORTED_PLATFORMS`. + +``` +environment: + # snip + JOB_DEFINITION_ARN_debian_9: + Ref: rBuildsBatchJobDefinitionDebian9 + SUPPORTED_PLATFORMS: ubuntu-1604,ubuntu-1804,debian-9 +``` + +### Makefile + +In order for the makefile to push these new platforms to ECR, add them to the PLATFORMS variable near the top of the Makefile + +### Submit a Pull Request + +Once you've followed the steps above, submit a pull request. On successful merge, builds for this platform will begin to be available from the CDN. + +## "Break Glass" + +Periodically, someone with access to these resources may need to re-trigger every R version/platform combination. This quite easy with the `serverless` tool installed. + +``` +serverless invoke stepf -n rBuilds -d '{"force": true}' +``` diff --git a/builder/Dockerfile.centos-6 b/builder/Dockerfile.centos-6 new file mode 100644 index 0000000..db90401 --- /dev/null +++ b/builder/Dockerfile.centos-6 @@ -0,0 +1,206 @@ +FROM centos:centos6 + +ENV OS_IDENTIFIER centos-6 + +RUN yum -y update \ + && yum -y install epel-release \ + && yum clean all + +RUN yum -y update \ + && yum -y install \ + atlas-devel \ + blas-devel \ + bzip2-devel \ + cairo-devel \ + gcc-c++ \ + gcc-gfortran \ + gcc-objc \ + glibc-devel \ + groff \ + java-1.8.0-openjdk-devel \ + krb5-devel \ + krb5-libs \ + lapack-devel \ + less \ + libICE-devel \ + libSM-devel \ + libX11-devel \ + libXmu-devel \ + libXt-devel \ + libgssapi-devel \ + libicu-devel \ + libidn-devel \ + libjpeg-devel \ + libmetalink-devel \ + libpng-devel \ + libssh2-devel \ + libtiff-devel \ + ncurses-devel \ + openldap \ + openldap-devel \ + openssh-clients \ + openssh-server \ + openssl-devel \ + pango-devel \ + pcre-devel \ + pcre2-devel \ + pkgconfig \ + python \ + python-pip \ + readline-devel \ + stunnel \ + tcl-devel \ + tex \ + texinfo-tex \ + texlive-latex \ + tk-devel \ + valgrind-devel \ + wget \ + xz-devel \ + zlib-devel \ + && yum clean all + +RUN pip install awscli + +RUN chmod 0777 /opt + +# Compile newer versions of zlib, bzip2, xz, pcre, and curl. +# +# Several compression libraries that were at one time included in R-devel have been removed. +# Instead of providing these libraries, R-devel assumes they are pre-installed. On RedHat 6, +# this results in build errors when zlib, bzip, pcre, curl, and xz are required. These +# libraries must be downloaded and compiled before building R-devel. Reference: +# http://pj.freefaculty.org/blog/?p=315 +# +# It's also import to build the static versions of these libraries and link them +# statically when building R. This allows us to use the R binaries we build on +# another CentOS/RHEL 6 OS without updating the same five libraries. +# For more info, see the "R.spec" RPM spec file in the EPEL source archive at: +# http://download-ib01.fedoraproject.org/pub/epel/7/SRPMS/Packages/r/R-3.5.2-2.el7.src.rpm +# (search for "zlibhack" in R.spec). +# +# First, reate a directory for the additional libraries. +RUN mkdir -p /tmp/extra + +# zlib 1.2.8 +# +# Note: zlib 1.2.11 works fine for all R versions except 3.3.0, 3.3.1, and 3.3.2, +# so I went with an older version (1.2.8) to accommodate the flaky R versions. See the +# following note on https://www.r-statistics.com/2017/03/r-3-3-3-is-released/: +# +# The configure check for the zlib version is now robust to versions longer than 5 characters, +# including 1.2.11. +# +ARG ZLIB_VERSION=1.2.8 +ARG ZLIB_DOWNLOAD_SHA256=36658cb768a54c1d4dec43c3116c27ed893e88b02ecfcb44f2166f9c0b7f2a0d +RUN curl -fsSL "https://zlib.net/fossils/zlib-${ZLIB_VERSION}.tar.gz" -o zlib.tar.gz \ + && echo "$ZLIB_DOWNLOAD_SHA256 zlib.tar.gz" | sha256sum -c - \ + && CWD=`pwd` && TMP=`mktemp -d` \ + && tar -C $TMP -zxvf zlib.tar.gz \ + && cd $TMP/zlib* \ + && ./configure --prefix=/tmp/extra --static \ + && make CFLAGS="-fpic -fPIC" \ + && make install \ + && cd $CWD && rm -rf $TMP && rm -rf zlib.tar.gz + +# bzip2 1.0.6 +ARG BZIP2_VERSION=1.0.6 +ARG BZIP2_DOWNLOAD_SHA1=3f89f861209ce81a6bab1fd1998c0ef311712002 +RUN curl -fsSL "https://sourceforge.net/projects/bzip2/files/bzip2-{$BZIP2_VERSION}.tar.gz/download" -o bzip2.tar.gz \ + && echo "$BZIP2_DOWNLOAD_SHA1 bzip2.tar.gz" | sha1sum -c - \ + && CWD=`pwd` && TMP=`mktemp -d` \ + && tar -C $TMP -zxvf bzip2.tar.gz \ + && cd $TMP/bzip2* \ + && make libbz2.a CFLAGS="-D_FILE_OFFSET_BITS=64 -fpic -fPIC" PREFIX=/tmp/extra \ + && make install PREFIX=/tmp/extra \ + && cd $CWD && rm -rf $TMP && rm -rf bzip2.tar.gz + +# xz 5.2.4 (for lzma libraries) +ARG XZ_VERSION=5.2.4 +ARG XZ_DOWNLOAD_SHA1=63ca380029597b951ce9afc6dec28f44f70bb5bd +RUN curl -fsSL "https://sourceforge.net/projects/lzmautils/files/xz-{$XZ_VERSION}.tar.gz/download" -o xz.tar.gz \ + && echo "$XZ_DOWNLOAD_SHA1 xz.tar.gz" | sha1sum -c - \ + && CWD=`pwd` && TMP=`mktemp -d` \ + && tar -C $TMP -zxvf xz.tar.gz \ + && cd $TMP/xz* \ + && CFLAGS="-fpic -fPIC" ./configure --enable-static=yes --enable-shared=no --prefix=/tmp/extra \ + && make -j8 \ + && make install \ + && cd $CWD && rm -rf $TMP && rm -rf xz.tar.gz + +# PCRE 8.42 +# +# The PCRE library provides PGP signatures for verifying downloads. Originally, I tried to do some +# PGP validation in the Dockerfile, but I ran into trouble with flaky key servers. To streamline +# things, I verified the download manually and then generated a sha256 checksum with the following +# commands: +# gpg --recv-key FB0F43D8 +# gpg pcre-8.42.tar.gz.sig +# sha256sum pcre-8.42.tar.gz +# +ARG PCRE_VERSION=8.42 +ARG PCRE_DOWNLOAD_SHA256=69acbc2fbdefb955d42a4c606dfde800c2885711d2979e356c0636efde9ec3b5 +RUN curl -fsSL "https://ftp.pcre.org/pub/pcre/pcre-{$PCRE_VERSION}.tar.gz" -o pcre.tar.gz \ + && echo "$PCRE_DOWNLOAD_SHA256 pcre.tar.gz" | sha256sum -c - \ + && CWD=`pwd` && TMP=`mktemp -d` \ + && tar -C $TMP -zxvf pcre.tar.gz \ + && cd $TMP/pcre* \ + && mkdir -p /tmp/extra \ + && CFLAGS="-fpic -fPIC" ./configure --enable-static=yes --enable-shared=no --enable-utf --enable-unicode-properties --enable-pcre8 --enable-pcre16 --enable-pcre32 --prefix=/tmp/extra \ + && make -j8 \ + && make install \ + && cd $CWD && rm -rf $TMP && rm -rf pcre.tar.gz + +# Curl 7.63.0 +# +# The curl library provides PGP signatures for verifying downloads. Originally, I tried to do some +# PGP validation in the Dockerfile, but I ran into trouble with flaky key servers. To streamline +# things, I verified the download manually and then generated a sha256 checksum with the following +# commands: +# gpg --recv-key B71E12C2 +# gpg curl-7.63.0.tar.gz.asc +# sha256sum curl-7.63.0.tar.gz +# +ARG CURL_VERSION=7.63.0 +ARG CURL_DOWNLOAD_SHA256=d483b89062832e211c887d7cf1b65c902d591b48c11fe7d174af781681580b41 +RUN curl -fsSL "https://curl.haxx.se/download/curl-{$CURL_VERSION}.tar.gz" -o curl.tar.gz \ + && echo "$CURL_DOWNLOAD_SHA256 curl.tar.gz" | sha256sum -c - \ + && CWD=`pwd` && TMP=`mktemp -d` \ + && tar -C $TMP -zxvf curl.tar.gz \ + && cd $TMP/curl* \ + && CFLAGS="-fpic -fPIC" ./configure --enable-static=yes --enable-shared=no --with-ssl --enable-ipv6 --with-gssapi --with-libidn --enable-ldaps --with-libssh2 --enable-threaded-resolver --with-libmetalink --prefix=/tmp/extra \ + && make V=1 \ + && make install \ + && cd $CWD && rm -rf $TMP && rm -rf curl.tar.gz + +# Compiler and linker flags for statically linking updated libraries +ENV CFLAGS="-fpic -fPIC -I/tmp/extra/include" +ENV CURL_CFLAGS='-DCURL_STATICLIB -I/tmp/extra/include' +ENV CURL_CPPFLAGS='-DCURL_STATICLIB -I/tmp/extra/include' + +# Configure flags for CentOS 6 that don't use the defaults in build.sh +ENV CONFIGURE_OPTIONS="\ + --enable-R-shlib \ + --with-tcltk \ + --enable-memory-profiling \ + --with-x \ + --with-system-valgrind-headers \ + --with-tcl-config=/usr/lib64/tclConfig.sh \ + --with-tk-config=/usr/lib64/tkConfig.sh \ + --enable-BLAS-shlib \ + --enable-prebuilt-html" + +# RHEL 6 doesn't have texi2any, so use makeinfo. +ENV MAKEINFO=makeinfo + +# RHEL 6 doesn't have the inconsolata font, so override the defaults. +ENV R_RD4PDF="times,hyper" + +# Copy a script to help set up the environment +COPY env_centos6.sh ./env.sh + +COPY build.sh . + +# Copy a script to clean up after the build +COPY clean_centos6.sh ./clean.sh +ENTRYPOINT ./build.sh diff --git a/builder/Dockerfile.centos-7 b/builder/Dockerfile.centos-7 new file mode 100644 index 0000000..0b97600 --- /dev/null +++ b/builder/Dockerfile.centos-7 @@ -0,0 +1,77 @@ +FROM centos:centos7 + +ENV OS_IDENTIFIER centos-7 + +RUN yum -y update \ + && yum -y install epel-release \ + && yum clean all + +RUN yum -y update \ + && yum -y install \ + atlas-devel \ + autoconf \ + automake \ + blas-devel \ + bzip2-devel \ + cairo-devel \ + gcc-c++ \ + gcc-gfortran \ + gcc-objc \ + java-1.8.0-openjdk-devel \ + java-1.8.0-openjdk-headless \ + lapack-devel \ + less \ + libICE-devel \ + libSM-devel \ + libX11-devel \ + libXmu-devel \ + libXt-devel \ + libcurl-devel \ + libicu-devel \ + libjpeg-devel \ + libpng-devel \ + libtiff-devel \ + libtool \ + make \ + ncurses-devel \ + openblas-devel \ + pango-devel \ + pcre-devel \ + pcre2-devel \ + python-pip \ + readline-devel \ + tcl-devel \ + tex \ + texinfo-tex \ + texlive-collection-latexrecommended \ + tk-devel \ + tre-devel \ + valgrind-devel \ + wget \ + xpdf \ + xz-devel \ + zlib-devel \ + && yum clean all + +RUN pip install awscli + +RUN chmod 0777 /opt + +# Configure flags for CentOS 7 that don't use the defaults in build.sh +ENV CONFIGURE_OPTIONS="\ + --enable-R-shlib \ + --with-tcltk \ + --enable-memory-profiling \ + --with-x \ + --with-system-valgrind-headers \ + --with-tcl-config=/usr/lib64/tclConfig.sh \ + --with-tk-config=/usr/lib64/tkConfig.sh \ + --enable-BLAS-shlib \ + --enable-prebuilt-html \ + --with-system-tre" + +# RHEL 7 doesn't have the inconsolata font, so override the defaults. +ENV R_RD4PDF="times,hyper" + +COPY build.sh . +ENTRYPOINT ./build.sh diff --git a/builder/Dockerfile.debian-9 b/builder/Dockerfile.debian-9 new file mode 100644 index 0000000..ee81ede --- /dev/null +++ b/builder/Dockerfile.debian-9 @@ -0,0 +1,17 @@ +FROM debian:stretch + +ENV OS_IDENTIFIER debian-9 + +RUN set -x \ + && export DEBIAN_FRONTEND=noninteractive \ + && echo 'deb-src http://deb.debian.org/debian stretch main' >> /etc/apt/sources.list \ + && apt-get update \ + && apt-get install -y libatlas3-base libcurl4-openssl-dev libicu-dev wget python-pip \ + && apt-get build-dep -y r-base + +RUN pip install awscli + +RUN chmod 0777 /opt + +COPY build.sh . +ENTRYPOINT ./build.sh diff --git a/builder/Dockerfile.opensuse-15 b/builder/Dockerfile.opensuse-15 new file mode 100644 index 0000000..ed96447 --- /dev/null +++ b/builder/Dockerfile.opensuse-15 @@ -0,0 +1,82 @@ +FROM opensuse/leap:15.0 + +ENV OS_IDENTIFIER opensuse-15 + +# Most of these packages, and also the configure options that follow were determined +# by reviewing "R-base.spec" from the following OpenSUSE RPM: +# https://download.opensuse.org/repositories/devel:/languages:/R:/released/openSUSE_Leap_42.3/src/R-base-3.5.3-103.1.src.rpm + +RUN zypper --non-interactive update +RUN zypper --non-interactive --gpg-auto-import-keys -n install \ + atlascpp-devel \ + blas-devel \ + bzip2 \ + cairo-devel \ + fdupes \ + gcc \ + gcc-c++ \ + gcc-fortran \ + glib2-devel \ + glibc-locale \ + help2man \ + java-1_8_0-openjdk-devel \ + lapack-devel \ + libX11-devel \ + libXScrnSaver-devel \ + libXmu-devel \ + libXt-devel \ + libbz2-devel \ + libcurl-devel \ + libicu-devel \ + libjpeg-devel \ + libpng-devel \ + libtiff-devel \ + pango-devel \ + pcre-devel \ + perl \ + perl-macros \ + python \ + python-pip \ + readline-devel \ + rpm-build \ + shadow \ + tcl-devel \ + texinfo \ + texlive-bibtex \ + texlive-cm-super \ + texlive-dvips \ + texlive-helvetic \ + texlive-inconsolata \ + texlive-latex \ + texlive-makeindex \ + texlive-metafont \ + texlive-psnfss \ + texlive-tex \ + texlive-times \ + tk-devel \ + unzip \ + wget \ + xdg-utils \ + xorg-x11-devel \ + xz-devel \ + zip \ + zlib-devel \ + && zypper clean + +RUN pip install awscli + +RUN chmod 0777 /opt + +# Configure flags for SUSE that don't use the defaults in build.sh +ENV CONFIGURE_OPTIONS="\ + --enable-R-shlib \ + --with-blas \ + --with-lapack \ + --with-tcltk \ + --with-x \ + --enable-memory-profiling \ + --with-tcl-config=/usr/lib64/tclConfig.sh \ + --with-tk-config=/usr/lib64/tkConfig.sh" + +COPY build.sh . +ENTRYPOINT ./build.sh diff --git a/builder/Dockerfile.opensuse-42 b/builder/Dockerfile.opensuse-42 new file mode 100644 index 0000000..fdcf86a --- /dev/null +++ b/builder/Dockerfile.opensuse-42 @@ -0,0 +1,86 @@ +FROM opensuse:42.3 + +ENV OS_IDENTIFIER opensuse-42 + +# Most of these packages, and also the configure options that follow were determined +# by reviewing "R-base.spec" from the following OpenSUSE RPM: +# https://download.opensuse.org/repositories/devel:/languages:/R:/released/openSUSE_Leap_42.3/src/R-base-3.5.3-103.1.src.rpm + +RUN zypper --non-interactive update +RUN zypper --non-interactive --gpg-auto-import-keys -n install \ + atlascpp-devel \ + blas-devel \ + bzip2 \ + cairo-devel \ + fdupes \ + gcc \ + gcc-c++ \ + gcc-fortran \ + glib2-devel \ + glibc-locale \ + help2man \ + java-1_8_0-openjdk-devel \ + lapack-devel \ + libX11-devel \ + libXScrnSaver-devel \ + libXmu-devel \ + libXt-devel \ + libbz2-devel \ + libcurl-devel \ + libicu-devel \ + libjpeg-devel \ + libpng-devel \ + libtiff-devel \ + pango-devel \ + pcre-devel \ + perl \ + perl-macros \ + python \ + python-pip \ + readline-devel \ + rpm-build \ + shadow \ + tcl-devel \ + texinfo \ + texlive-bibtex \ + texlive-cm-super \ + texlive-dvips \ + texlive-helvetic \ + texlive-inconsolata \ + texlive-latex \ + texlive-makeindex \ + texlive-metafont \ + texlive-psnfss \ + texlive-tex \ + texlive-times \ + tk-devel \ + unzip \ + wget \ + xdg-utils \ + xorg-x11-devel \ + xz-devel \ + zip \ + zlib-devel \ + && zypper clean + +RUN pip install awscli + +RUN chmod 0777 /opt + +# SUSE 12 doesn't have texi2any, so use makeinfo. +ENV MAKEINFO=makeinfo + +# Configure flags for SUSE that don't use the defaults in build.sh +ENV CONFIGURE_OPTIONS="\ + --enable-R-shlib \ + --with-blas \ + --with-lapack \ + --with-tcltk \ + --with-x \ + --enable-memory-profiling \ + --with-tcl-config=/usr/lib64/tclConfig.sh \ + --with-tk-config=/usr/lib64/tkConfig.sh \ + --enable-prebuilt-html" + +COPY build.sh . +ENTRYPOINT ./build.sh diff --git a/builder/Dockerfile.ubuntu-1604 b/builder/Dockerfile.ubuntu-1604 new file mode 100644 index 0000000..4f0e410 --- /dev/null +++ b/builder/Dockerfile.ubuntu-1604 @@ -0,0 +1,17 @@ +FROM ubuntu:xenial + +ENV OS_IDENTIFIER ubuntu-1604 + +RUN set -x \ + && sed -i "s|# deb-src|deb-src|g" /etc/apt/sources.list \ + && export DEBIAN_FRONTEND=noninteractive \ + && apt-get update \ + && apt-get install -y libatlas3-base libcurl4-openssl-dev libicu-dev wget python-pip \ + && apt-get build-dep -y r-base + +RUN pip install awscli + +RUN chmod 0777 /opt + +COPY build.sh . +ENTRYPOINT ./build.sh diff --git a/builder/Dockerfile.ubuntu-1804 b/builder/Dockerfile.ubuntu-1804 new file mode 100644 index 0000000..8d9039c --- /dev/null +++ b/builder/Dockerfile.ubuntu-1804 @@ -0,0 +1,17 @@ +FROM ubuntu:bionic + +ENV OS_IDENTIFIER ubuntu-1804 + +RUN set -x \ + && sed -i "s|# deb-src|deb-src|g" /etc/apt/sources.list \ + && export DEBIAN_FRONTEND=noninteractive \ + && apt-get update \ + && apt-get install -y libatlas3-base libcurl4-openssl-dev libicu-dev wget python-pip \ + && apt-get build-dep -y r-base + +RUN pip install awscli + +RUN chmod 0777 /opt + +COPY build.sh . +ENTRYPOINT ./build.sh diff --git a/builder/build.sh b/builder/build.sh new file mode 100755 index 0000000..c53f5fc --- /dev/null +++ b/builder/build.sh @@ -0,0 +1,107 @@ +#!/bin/bash +set -e + +export CRAN=${CRAN-"https://cran.rstudio.com"} +export S3_BUCKET_PREFIX=${S3_BUCKET_PREFIX-""} +export OS_IDENTIFIER=${OS_IDENTIFIER-"unknown"} +export TARBALL_NAME="R-${R_VERSION}-${OS_IDENTIFIER}.tar.gz" + +# Some Dockerfiles may copy a `/env.sh` to set up environment variables +# that require command substitution. If this file exists, source it. +if [[ -f /env.sh ]]; then + echo "Sourcing environment variables" + source /env.sh +fi + +# upload_r() +upload_r() { + baseName="r/${OS_IDENTIFIER}" + if [ -n "$S3_BUCKET" ] && [ "$S3_BUCKET" != "" ]; then + echo "Storing artifact on s3: ${S3_BUCKET}, tarball: ${TARBALL_NAME}" + aws s3 cp /tmp/${TARBALL_NAME} s3://${S3_BUCKET}/${S3_BUCKET_PREFIX}${baseName}/${TARBALL_NAME} + fi + if [ -n "$LOCAL_STORE" ] && [ "$LOCAL_STORE" != '' ]; then + echo "Storing artifact locally: ${LOCAL_STORE}, tarball: ${TARBALL_NAME}" + mkdir -p ${LOCAL_STORE}/${baseName} + cp /tmp/${TARBALL_NAME} ${LOCAL_STORE}/${baseName}/${TARBALL_NAME}.tar.gz + fi +} + +# archive_r() - $1 as r version +archive_r() { + tar czf /tmp/${TARBALL_NAME} --directory=/opt/R ${1} --owner=0 --group=0 +} + +fetch_r_source() { + echo "Downloading R-${1}" + wget -q ${CRAN}/src/base/R-3/R-${1}.tar.gz -O /tmp/R-${1}.tar.gz + echo "Extracting R-${1}" + tar xf /tmp/R-${1}.tar.gz -C /tmp + rm /tmp/R-${1}.tar.gz +} + +# On CentOS 6, we need to clean up references to the static library and header paths. +clean_r() { + if [[ -f /clean.sh ]]; then + echo "Cleaning R build on CentOS 6" + source /clean.sh + fi +} + +# compile_r() - $1 as r version +compile_r() { + cd /tmp/R-${1} + + # tools/config.guess in R versions older than 3.2.2 guess 'unknown' instead of 'pc' + # test the version and properly set the flag. + build_flag='--build=x86_64-pc-linux-gnu' + if _version_is_greater_than ${R_VERSION} 3.2.2; then + build_flag='' + fi + + # Default configure options. Some Dockerfiles override this with an ENV directive. + default_configure_options="\ + --enable-R-shlib \ + --with-tcltk \ + --enable-memory-profiling \ + --with-x \ + --with-blas \ + --with-lapack" + + CONFIGURE_OPTIONS=${CONFIGURE_OPTIONS:-$default_configure_options} + + # set some common environment variables for the configure step + AWK=/usr/bin/awk \ + LIBnn=lib \ + PAGER=/usr/bin/pager \ + PERL=/usr/bin/perl \ + R_PDFVIEWER=xdg-open \ + R_BROWSER=xdg-open \ + R_PAPERSIZE=letter \ + R_PRINTCMD=/usr/bin/lpr \ + R_UNZIPCMD=/usr/bin/unzip \ + R_ZIPCMD=/usr/bin/zip \ + ./configure \ + --prefix=/opt/R/${1} \ + ${CONFIGURE_OPTIONS} \ + ${build_flag} + make clean + make + make install +} + +set_up_environment() { + mkdir -p /opt/R +} + +_version_is_greater_than() { + test "$(printf '%s\n' "$@" | sort -V | head -n 1)" != "$1" +} + +###### RUN R COMPILE PROCEDURE ###### +set_up_environment +fetch_r_source $R_VERSION +compile_r $R_VERSION +clean_r +archive_r $R_VERSION +upload_r $R_VERSION diff --git a/builder/clean_centos6.sh b/builder/clean_centos6.sh new file mode 100755 index 0000000..e1d1cc1 --- /dev/null +++ b/builder/clean_centos6.sh @@ -0,0 +1,14 @@ +#!/bin/bash + +# For CentOS 6, we need to clean references to the static library and header paths +# out of the R configuration files +sed -i 's|-Wl,--whole-archive /tmp/extra/lib/libz.a /tmp/extra/lib/libbz2.a /tmp/extra/lib/liblzma.a /tmp/extra/lib/libpcre.a /tmp/extra/lib/libcurl.a -Wl,--no-whole-archive -L/tmp/extra/lib/||g' /opt/R/${R_VERSION}/lib/R/etc/Makeconf +sed -i 's|-Wl,--whole-archive /tmp/extra/lib/libz.a /tmp/extra/lib/libbz2.a /tmp/extra/lib/liblzma.a /tmp/extra/lib/libpcre.a /tmp/extra/lib/libcurl.a -Wl,--no-whole-archive -L/tmp/extra/lib/||g' /opt/R/${R_VERSION}/lib/pkgconfig/libR.pc +sed -i 's|-ldl -lpthread .* -lldap -lz -lrt||g' /opt/R/${R_VERSION}/lib/R/etc/Makeconf +sed -i 's|-ldl -lpthread .* -lldap -lz -lrt||g' /opt/R/${R_VERSION}/lib/pkgconfig/libR.pc +sed -i 's|-I/tmp/extra/include||g' /opt/R/${R_VERSION}/lib/R/etc/Makeconf +sed -i 's|-I/tmp/extra/include||g' /opt/R/${R_VERSION}/lib/R/bin/libtool +sed -i 's|-ldl -lpthread .* -lldap -lz||g' /opt/R/${R_VERSION}/lib/R/etc/Makeconf +sed -i 's|-ldl -lpthread .* -lldap||g' /opt/R/${R_VERSION}/lib/R/etc/Makeconf +sed -i 's|:/tmp/extra/lib||g' /opt/R/${R_VERSION}/lib/R/etc/ldpaths +sed -i 's|/tmp/extra/lib||g' /opt/R/${R_VERSION}/lib/R/etc/ldpaths diff --git a/builder/docker-compose.yml b/builder/docker-compose.yml new file mode 100644 index 0000000..63a46a0 --- /dev/null +++ b/builder/docker-compose.yml @@ -0,0 +1,80 @@ +version: '2.0' + +services: + ubuntu-1604: + command: ./build.sh + environment: + - R_VERSION=${R_VERSION} + - LOCAL_STORE=/tmp/output + build: + context: . + dockerfile: Dockerfile.ubuntu-1604 + image: r-builds:ubuntu-1604 + volumes: + - ./integration/tmp:/tmp/output + ubuntu-1804: + command: ./build.sh + environment: + - R_VERSION=${R_VERSION} + - LOCAL_STORE=/tmp/output + build: + context: . + dockerfile: Dockerfile.ubuntu-1804 + image: r-builds:ubuntu-1804 + volumes: + - ./integration/tmp:/tmp/output + debian-9: + command: ./build.sh + environment: + - R_VERSION=${R_VERSION} + - LOCAL_STORE=/tmp/output + build: + context: . + dockerfile: Dockerfile.debian-9 + image: r-builds:debian-9 + volumes: + - ./integration/tmp:/tmp/output + centos-6: + command: ./build.sh + environment: + - R_VERSION=${R_VERSION} + - LOCAL_STORE=/tmp/output + build: + context: . + dockerfile: Dockerfile.centos-6 + image: r-builds:centos-6 + volumes: + - ./integration/tmp:/tmp/output + centos-7: + command: ./build.sh + environment: + - R_VERSION=${R_VERSION} + - LOCAL_STORE=/tmp/output + build: + context: . + dockerfile: Dockerfile.centos-7 + image: r-builds:centos-7 + volumes: + - ./integration/tmp:/tmp/output + opensuse-42: + command: ./build.sh + environment: + - R_VERSION=${R_VERSION} + - LOCAL_STORE=/tmp/output + build: + context: . + dockerfile: Dockerfile.opensuse-42 + image: r-builds:opensuse-42 + volumes: + - ./integration/tmp:/tmp/output + opensuse-15: + command: ./build.sh + environment: + - R_VERSION=${R_VERSION} + - LOCAL_STORE=/tmp/output + build: + context: . + dockerfile: Dockerfile.opensuse-15 + image: r-builds:opensuse-15 + volumes: + - ./integration/tmp:/tmp/output diff --git a/builder/env_centos6.sh b/builder/env_centos6.sh new file mode 100755 index 0000000..8e6ffa9 --- /dev/null +++ b/builder/env_centos6.sh @@ -0,0 +1,14 @@ +# Test to see if $R_VERSION is <= 3.1.3. If so, append some additional configure options +# to the $CONFIGURE_OPTIONS env var. +NEWLINE=$'\n' +if [[ "$(printf '%s\n' "${R_VERSION}${NEWLINE}3.1.3" | sort -V | head -n 1)" == "$R_VERSION" ]]; then \ + export CONFIGURE_OPTIONS="${CONFIGURE_OPTIONS} \ + --with-system-zlib \ + --with-system-bzlib \ + --with-system-pcre \ + --with-system-xz" +fi + +# Get library linking information from CURL. This is then used to populate LDFLAGS +export CURL_LIBS="`/tmp/extra/bin/curl-config --libs`" +export LDFLAGS="-ldl -lpthread -lc -lrt -Wl,--as-needed -Wl,--whole-archive /tmp/extra/lib/libz.a /tmp/extra/lib/libbz2.a /tmp/extra/lib/liblzma.a /tmp/extra/lib/libpcre.a /tmp/extra/lib/libcurl.a -Wl,--no-whole-archive -L/tmp/extra/lib/ ${CURL_LIBS}" diff --git a/handler.py b/handler.py new file mode 100644 index 0000000..437974c --- /dev/null +++ b/handler.py @@ -0,0 +1,131 @@ +import os +from bs4 import BeautifulSoup +import requests +import json +import boto3 +import botocore + +CRAN_SRC_R_URL = 'https://cran.rstudio.com/src/base/R-3/' +batch_client = boto3.client('batch', region_name='us-east-1') + + +def _to_list(input): + """Normalize a list (list or string) to list.""" + if isinstance(input, list): + return input + return input.split(',') + + +def _persist_r_versions(data): + """Ship current list to s3.""" + s3 = boto3.resource('s3') + obj = s3.Object(os.environ['S3_BUCKET'], 'r/versions.json') + obj.put(Body=json.dumps(data), ContentType='application/json') + + +def _cran_r_versions(): + """Perform a lookup of CRAN-known R version.""" + r = requests.get(CRAN_SRC_R_URL) + soup = BeautifulSoup(r.text, 'html.parser') + r_versions = [] + for link in soup.find_all('a'): + href = link.get('href') + if 'R-' in href: + v = href.replace('.tar.gz', '').replace('R-', '') + if '-revised' not in v: # reject 3.2.4-revised + r_versions.append(v) + return {'r_versions': r_versions} + + +def _known_r_versions(): + """Ship current list to s3.""" + try: + s3 = boto3.resource('s3') + obj = s3.Object(os.environ['S3_BUCKET'], 'r/versions.json') + str = obj.get()['Body'].read().decode('utf-8') + except botocore.exceptions.ClientError: + print('Key not found, using empty list') + str = '{"r_versions":[]}' + return json.loads(str) + + +def _compare_versions(fresh, known): + """Compare fresh cran list to new list and return unknown versions.""" + new = set(fresh) - set(known) + return list(new) + + +def _container_overrides(version): + """Generate container override parameter for jobs.""" + overrides = {} + overrides['environment'] = [ + {'name': 'R_VERSION', 'value': version}, + {'name': 'S3_BUCKET', 'value': os.environ['S3_BUCKET']} + ] + return overrides + + +def _submit_job(version, platform): + """Submit an R build job to AWS Batch.""" + job_name = '-'.join(['R', version, platform]) + job_name = job_name.replace('.', '_') + job_definition_arn = 'JOB_DEFINITION_ARN_{}'.format(platform.replace('-','_')) + args = { + 'jobName': job_name, + 'jobQueue': os.environ['JOB_QUEUE_ARN'], + 'jobDefinition': os.environ[job_definition_arn], + 'containerOverrides': _container_overrides(version) + } + if os.environ.get('DRYRUN'): + print('DRYRUN: would have queued {}'.format(job_name)) + return 'dryrun-no-job-{}'.format(job_name) + else: + response = batch_client.submit_job(**args) + print("Started job for R:{},Platform:{},id:{}".format(version, platform, response['jobId'])) + return response['jobId'] + + +def _versions_to_build(force): + cran_versions = _cran_r_versions()['r_versions'] + known_versions = _known_r_versions()['r_versions'] + new_versions = _compare_versions(cran_versions, known_versions) + + if len(new_versions) > 0: + print('New R Versions found: %s' % new_versions) + _persist_r_versions(_cran_r_versions()) + + if force in [True, 'True', 'true']: + return cran_versions + else: + return new_versions + + +def _check_for_job_status(jobs, status): + """Return a subset of job ids which match a given status.""" + r = batch_client.list_jobs(jobQueue=os.environ['JOB_QUEUE_ARN'], jobStatus=status) + return [i['jobId'] for i in r['jobSummaryList'] if i['jobId'] in jobs] + + +def queue_builds(event, context): + """Queue some builds.""" + event['versions_to_build'] = _versions_to_build(event.get('force', False)) + event['supported_platforms'] = _to_list(os.environ.get('SUPPORTED_PLATFORMS', 'ubuntu-1604')) + job_ids = [] + for version in event['versions_to_build']: + for platform in event['supported_platforms']: + # skip bionic builds with a configure script bug + if (platform == 'ubuntu-1804' or platform == 'opensuse-15') and version in ['3.3.0', '3.3.1', '3.3.2']: + continue + job_ids.append(_submit_job(version, platform)) + event['jobIds'] = job_ids + return event + + +def poll_running_jobs(event, context): + """Query job queue for current queue depth.""" + event['failedJobIds'] = _check_for_job_status(event['jobIds'], 'FAILED') + event['succeededJobIds'] = _check_for_job_status(event['jobIds'], 'SUCCEEDED') + event['failedJobCount'] = len(event['failedJobIds']) + event['finishedJobCount'] = len(event['failedJobIds']) + len(event['succeededJobIds']) + event['unfinishedJobCount'] = len(event['jobIds']) - event['finishedJobCount'] + return event diff --git a/jenkins/Dockerfile b/jenkins/Dockerfile new file mode 100644 index 0000000..cb41b48 --- /dev/null +++ b/jenkins/Dockerfile @@ -0,0 +1,24 @@ +FROM node:8 + +ARG JENKINS_UID=386 +ARG JENKINS_GID=386 +ARG DOCKER_GID=999 + +RUN apt-get update -qq && apt-get install -y python-pip +RUN pip install awscli + +# install docker cli +RUN wget -q -O /tmp/docker-cli.deb https://download.docker.com/linux/debian/dists/stretch/pool/stable/amd64/docker-ce-cli_18.09.2~3-0~debian-stretch_amd64.deb \ + && dpkg -i /tmp/docker-cli.deb + +RUN npm install -g serverless + +# Create the jenkins user with the same id:gid as the jenkins node +RUN groupadd -g $JENKINS_GID jenkins \ + && useradd -m -d /var/lib/jenkins -u $JENKINS_UID -g jenkins jenkins + +# create docker group, add jenkins user to it +RUN groupadd -g $DOCKER_GID docker \ + && usermod -aG docker jenkins + +USER jenkins diff --git a/package-lock.json b/package-lock.json new file mode 100644 index 0000000..658d5b4 --- /dev/null +++ b/package-lock.json @@ -0,0 +1,3372 @@ +{ + "name": "r-builds", + "version": "0.1.0", + "lockfileVersion": 1, + "requires": true, + "dependencies": { + 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0000000..53ff804 --- /dev/null +++ b/requirements.txt @@ -0,0 +1,14 @@ +beautifulsoup4==4.6.3 +boto3==1.9.55 +botocore==1.12.55 +bs4==0.0.1 +certifi==2018.10.15 +chardet==3.0.4 +docutils==0.14 +idna==2.7 +jmespath==0.9.3 +python-dateutil==2.7.5 +requests==2.20.1 +s3transfer==0.1.13 +six==1.11.0 +urllib3==1.24.1 diff --git a/serverless-resources.yml b/serverless-resources.yml new file mode 100644 index 0000000..0b549b0 --- /dev/null +++ b/serverless-resources.yml @@ -0,0 +1,240 @@ +rBuildsBatchIamRole: + Type: AWS::IAM::Role + Properties: + Path: /service-role/ + AssumeRolePolicyDocument: + Version: '2012-10-17' + Statement: + - Effect: Allow + Principal: + Service: + - batch.amazonaws.com + Action: sts:AssumeRole + ManagedPolicyArns: + - arn:aws:iam::aws:policy/service-role/AWSBatchServiceRole +rBuildsSpotFleetIamRole: + Type: AWS::IAM::Role + Properties: + Path: /service-role/ + AssumeRolePolicyDocument: + Version: '2012-10-17' + Statement: + - Effect: Allow + Principal: + Service: + - spotfleet.amazonaws.com + Action: sts:AssumeRole + ManagedPolicyArns: + - arn:aws:iam::aws:policy/service-role/AmazonEC2SpotFleetTaggingRole +rBuildsInstanceIamRole: + Type: AWS::IAM::Role + Properties: + AssumeRolePolicyDocument: + Version: '2012-10-17' + Statement: + - Effect: 'Allow' + Principal: + Service: + - 'ec2.amazonaws.com' + Action: + - 'sts:AssumeRole' + Path: '/' + ManagedPolicyArns: + - arn:aws:iam::aws:policy/service-role/AmazonEC2ContainerServiceforEC2Role + +rBuildsIamInstanceProfile: + Type: AWS::IAM::InstanceProfile + Properties: + Path: '/' + Roles: + - Ref: rBuildsInstanceIamRole +rBuildsEcsTaskIamRole: + Type: AWS::IAM::Role + Properties: + Path: /service-role/ + AssumeRolePolicyDocument: + Version: '2012-10-17' + Statement: + - Effect: Allow + Principal: + Service: + - ecs-tasks.amazonaws.com + Action: sts:AssumeRole + ManagedPolicyArns: + - arn:aws:iam::aws:policy/service-role/AmazonECSTaskExecutionRolePolicy + Policies: + - PolicyName: 's3-r-builds-bucket' + PolicyDocument: + Version: '2012-10-17' + Statement: + - Effect: Allow + Action: + - s3:* + Resource: + - arn:aws:s3:::${self:custom.s3Bucket} + - arn:aws:s3:::${self:custom.s3Bucket}/* + +rBuildsBatchComputeEnvironment: + Type: AWS::Batch::ComputeEnvironment + DependsOn: rBuildsBatchIamRole + Properties: + Type: MANAGED + ServiceRole: + "Fn::GetAtt": [ rBuildsBatchIamRole, Arn ] + ComputeResources: + SpotIamFleetRole: + "Fn::GetAtt": [ rBuildsSpotFleetIamRole, Arn ] + SecurityGroupIds: ${self:custom.securityGroupIds} + Subnets: ${self:custom.subnets} + Type: SPOT + BidPercentage: 40 + InstanceRole: + "Fn::GetAtt": [ rBuildsIamInstanceProfile, Arn ] + InstanceTypes: + - m4.large + - m4.xlarge + - m4.2xlarge + - m4.4xlarge + - m4.10xlarge + - m4.16xlarge + - r4.large + - r4.xlarge + - r4.2xlarge + - r4.4xlarge + Ec2KeyPair: ${self:custom.ec2KeyPair} + Tags: ${self:provider.stackTags} + MinvCpus: 0 + DesiredvCpus: 0 + MaxvCpus: 256 + +rBuildsBatchJobQueue: + Type: AWS::Batch::JobQueue + Properties: + ComputeEnvironmentOrder: + - Order: 1 + ComputeEnvironment: + Ref: rBuildsBatchComputeEnvironment + State: ENABLED + Priority: 1 + +rBuildsBatchJobDefinitionUbuntu1604: + Type: AWS::Batch::JobDefinition + Properties: + Type: container + ContainerProperties: + Command: + - ./build.sh + Vcpus: 4 + Memory: 4096 + JobRoleArn: + "Fn::GetAtt": [ rBuildsEcsTaskIamRole, Arn ] + Image: "#{AWS::AccountId}.dkr.ecr.#{AWS::Region}.amazonaws.com/r-builds:ubuntu-1604" +rBuildsBatchJobDefinitionUbuntu1804: + Type: AWS::Batch::JobDefinition + Properties: + Type: container + ContainerProperties: + Command: + - ./build.sh + Vcpus: 4 + Memory: 4096 + JobRoleArn: + "Fn::GetAtt": [ rBuildsEcsTaskIamRole, Arn ] + Image: "#{AWS::AccountId}.dkr.ecr.#{AWS::Region}.amazonaws.com/r-builds:ubuntu-1804" +rBuildsBatchJobDefinitionDebian9: + Type: AWS::Batch::JobDefinition + Properties: + Type: container + ContainerProperties: + Command: + - ./build.sh + Vcpus: 4 + Memory: 4096 + JobRoleArn: + "Fn::GetAtt": [ rBuildsEcsTaskIamRole, Arn ] + Image: "#{AWS::AccountId}.dkr.ecr.#{AWS::Region}.amazonaws.com/r-builds:debian-9" +rBuildsBatchJobDefinitionCentos6: + Type: AWS::Batch::JobDefinition + Properties: + Type: container + ContainerProperties: + Command: + - ./build.sh + Vcpus: 4 + Memory: 4096 + JobRoleArn: + "Fn::GetAtt": [ rBuildsEcsTaskIamRole, Arn ] + Image: "#{AWS::AccountId}.dkr.ecr.#{AWS::Region}.amazonaws.com/r-builds:centos-6" +rBuildsBatchJobDefinitionCentos7: + Type: AWS::Batch::JobDefinition + Properties: + Type: container + ContainerProperties: + Command: + - ./build.sh + Vcpus: 4 + Memory: 4096 + JobRoleArn: + "Fn::GetAtt": [ rBuildsEcsTaskIamRole, Arn ] + Image: "#{AWS::AccountId}.dkr.ecr.#{AWS::Region}.amazonaws.com/r-builds:centos-7" +rBuildsBatchJobDefinitionOpensuse42: + Type: AWS::Batch::JobDefinition + Properties: + Type: container + ContainerProperties: + Command: + - ./build.sh + Vcpus: 4 + Memory: 4096 + JobRoleArn: + "Fn::GetAtt": [ rBuildsEcsTaskIamRole, Arn ] + Image: "#{AWS::AccountId}.dkr.ecr.#{AWS::Region}.amazonaws.com/r-builds:opensuse-42" +rBuildsBatchJobDefinitionOpensuse15: + Type: AWS::Batch::JobDefinition + Properties: + Type: container + ContainerProperties: + Command: + - ./build.sh + Vcpus: 4 + Memory: 4096 + JobRoleArn: + "Fn::GetAtt": [ rBuildsEcsTaskIamRole, Arn ] + Image: "#{AWS::AccountId}.dkr.ecr.#{AWS::Region}.amazonaws.com/r-builds:opensuse-15" + +# step function cloudwatch event trigger resources +rBuildsEventRuleIamRole: + Type: AWS::IAM::Role + Properties: + Path: /service-role/ + AssumeRolePolicyDocument: + Version: '2012-10-17' + Statement: + - Effect: Allow + Principal: + Service: + - events.amazonaws.com + Action: sts:AssumeRole + Policies: + - PolicyName: 'allow-step-function-execution' + PolicyDocument: + Version: '2012-10-17' + Statement: + - Effect: Allow + Action: + - states:StartExecution + Resource: + Ref: RBuildsStepFunction + +rBuildsEventRule: + Type: AWS::Events::Rule + Properties: + Description: Check for New R Versions + ScheduleExpression: rate(1 hour) + Targets: + - Id: rbuilds + Input: '{}' + RoleArn: + Fn::GetAtt: [ rBuildsEventRuleIamRole, Arn ] + Arn: + Ref: RBuildsStepFunction diff --git a/serverless-stepf.yml b/serverless-stepf.yml new file mode 100644 index 0000000..7357280 --- /dev/null +++ b/serverless-stepf.yml @@ -0,0 +1,38 @@ +rBuilds: + Comment: "R Builds" + id: RBuildsStepFunction + definition: + StartAt: QueueBuilds + States: + QueueBuilds: + Type: Task + Resource: arn:aws:lambda:#{AWS::Region}:#{AWS::AccountId}:function:${self:service}-${self:provider.stage}-queueBuilds + Next: Wait + Wait: + Type: Wait + Seconds: 60 + Next: JobQueueStatus + JobQueueStatus: + Type: Task + Resource: arn:aws:lambda:#{AWS::Region}:#{AWS::AccountId}:function:${self:service}-${self:provider.stage}-jobQueueStatus + Next: QueueEmpty? + QueueEmpty?: + Type: Choice + Choices: + - Variable: "$.unfinishedJobCount" + NumericGreaterThan: 0 + Next: Wait + - Variable: "$.unfinishedJobCount" + NumericEquals: 0 + Next: SuccessOrFail + SuccessOrFail: + Type: Choice + Choices: + - Variable: "$.failedJobCount" + NumericGreaterThan: 0 + Next: Fail + Default: Succeed + Fail: + Type: Fail + Succeed: + Type: Succeed diff --git a/serverless.yml b/serverless.yml new file mode 100644 index 0000000..2cdcc55 --- /dev/null +++ b/serverless.yml @@ -0,0 +1,64 @@ +service: r-builds + +plugins: + - serverless-python-requirements + - serverless-step-functions + - serverless-pseudo-parameters +custom: ${file(./serverless-custom.yml)} + +package: + exclude: + - integration/** + - builder/** + - docs/** + +provider: + name: aws + runtime: python3.6 + deploymentBucket: + name: ${self:custom.deploymentBucket} + stackTags: ${self:custom.stackTags} + iamRoleStatements: + - Effect: Allow + Action: + - "batch:*" + Resource: '*' + - Effect: Allow + Action: + - "s3:*" + Resource: + - arn:aws:s3:::${self:custom.s3Bucket} + - arn:aws:s3:::${self:custom.s3Bucket}/* + environment: + S3_BUCKET: ${self:custom.s3Bucket} + JOB_QUEUE_ARN: + Ref: rBuildsBatchJobQueue + JOB_DEFINITION_ARN_ubuntu_1604: + Ref: rBuildsBatchJobDefinitionUbuntu1604 + JOB_DEFINITION_ARN_ubuntu_1804: + Ref: rBuildsBatchJobDefinitionUbuntu1804 + JOB_DEFINITION_ARN_debian_9: + Ref: rBuildsBatchJobDefinitionDebian9 + JOB_DEFINITION_ARN_centos_6: + Ref: rBuildsBatchJobDefinitionCentos6 + JOB_DEFINITION_ARN_centos_7: + Ref: rBuildsBatchJobDefinitionCentos7 + JOB_DEFINITION_ARN_opensuse_42: + Ref: rBuildsBatchJobDefinitionOpensuse42 + JOB_DEFINITION_ARN_opensuse_15: + Ref: rBuildsBatchJobDefinitionOpensuse15 + SUPPORTED_PLATFORMS: ubuntu-1604,ubuntu-1804,debian-9,centos-6,centos-7,opensuse-42,opensuse-15 + +functions: + queueBuilds: + timeout: 30 + handler: handler.queue_builds + jobQueueStatus: + handler: handler.poll_running_jobs + + +stepFunctions: + stateMachines: ${file(./serverless-stepf.yml)} + +resources: + Resources: ${file(./serverless-resources.yml)}