pat-s
53da568749
All checks were successful
ci/crow/cron/process-updates-ubuntu-2204-amd64 Pipeline was successful
## Summary
`local/build-all.R` had a 75-name hardcoded `exclude <- c(...)` vector that had drifted from `local/excluded-packages.json` — `RcmdrPlugin.ROC` was in the R vector but missing from the JSON.
`.crow/weekly-rebuild-missing-*.yaml` already reads the JSON via `jsonlite::fromJSON(...)[["package"]]`. This brings `build-all.R` in line with that pattern.
Changes:
- **`local/excluded-packages.json`**: add the missing `RcmdrPlugin.ROC` entry (reason `"hang"`, matching siblings).
- **`local/build-all.R`**: replace the 16-line hardcoded vector with one `jsonlite::fromJSON(...)` call.
- **`.crow/build-all-versions-install-deps-{amd,arm}64.yaml`**: add `jsonlite` to the install-deps `pak::pak()` list so it's available in `/mnt/cache/R-pkgs` for the build step.
- **`.crow/build-all-versions-arm64.yaml`**: drop the dead base64-encoded `SKIP_PKGS` docs comment that nobody was passing as a `--var` anyway; replace with a one-line pointer to the JSON.
Reviewed-on: #79
56 lines
1.9 KiB
YAML
56 lines
1.9 KiB
YAML
when:
|
|
- event: manual
|
|
evaluate: 'task == "build-all-arm64"'
|
|
|
|
skip_clone: true
|
|
|
|
labels:
|
|
agent: gaia
|
|
|
|
steps:
|
|
- name: 'Install deps and bincraft'
|
|
image: "reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}"
|
|
pull: true
|
|
environment:
|
|
REPO_RO_TOKEN:
|
|
from_secret: REPO_RO_TOKEN
|
|
GITHUB_PAT:
|
|
from_secret: GITHUB_PAT
|
|
B2_S3_ACCESS_KEY:
|
|
from_secret: B2_S3_ACCESS_KEY
|
|
B2_S3_SECRET_KEY:
|
|
from_secret: B2_S3_SECRET_KEY
|
|
PGPASS:
|
|
from_secret: PGPASS
|
|
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
|
|
R_LIBS_USER: /mnt/cache/R-pkgs
|
|
CCACHE_DIR: /mnt/cache/ccache
|
|
volumes:
|
|
- ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
|
|
commands:
|
|
# one-time full wipe to fix corrupted .so files from previous failed builds
|
|
# - rm -rf /mnt/cache/R-pkgs
|
|
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
|
|
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
|
|
- git clone -q https://codefloe.com/rpkgs/bincraft.git /tmp/bincraft
|
|
- /opt/R/$R_VERSION/bin/R -q -e 'pak::sysreqs_db_update(); pak::local_install("/tmp/bincraft"); pak::pak(c("RPostgres", "s3fs", "data.table", "future", "jsonlite")); packageVersion("bincraft")'
|
|
- /opt/R/$R_VERSION/bin/R -q -e "source('local/packages-to-build.R'); saveRDS(pkgs, '/mnt/cache/packages/pkgs_to_build.rds'); sprintf('Precomputed %s package versions to build', nrow(pkgs))"
|
|
backend_options:
|
|
docker:
|
|
resources:
|
|
requests:
|
|
memory: 5Gi
|
|
cpu: 1000m
|
|
kubernetes:
|
|
resources:
|
|
requests:
|
|
memory: 5Gi
|
|
cpu: 1000m
|
|
nodeSelector:
|
|
kubernetes.io/arch: ${ARCH}
|
|
node.kubernetes.io/instance-type: ${K8S_INSTANCE_TYPE}
|
|
tolerations:
|
|
- key: 'CI'
|
|
operator: 'Equal'
|
|
value: 'true'
|
|
effect: 'NoSchedule'
|