Part of https://codefloe.com/rpkgs/bincraft/issues/225. Stacked on #234.
Every connection to the metadata database used `sslmode = 'require'`, which encrypts but does not authenticate the server, so anyone able to impersonate `r-binaries.devxy.io:15432` would receive `PGPASS`.
## Changes
- `.crow/build-all-versions.yaml`, `process-updates.yaml`, `prune-stale-flat-binaries.yaml`, `reindex.yaml`, `weekly-rebuild-reindex.yaml`: `metadata_db_sslmode = 'verify-full'` in every bincraft call.
- `local/*.R`: the same for bincraft calls; scripts that call `DBI::dbConnect()` directly also pass `sslrootcert = bincraft::postgres_sslrootcert("verify-full")`, because libpq looks for `~/.postgresql/root.crt` rather than the system trust store.
- `README.md`: note that the endpoint serves a Let's Encrypt certificate and how to verify it.
- air reformatted three `=` assignments to `<-` in `local/missing-cran-packages-db.R` and `local/packages-without-any-binary.R` while the hook ran on those files.
## Ordering: merge last
1. devxy/k8s-talos#417 must be live: today the server presents an in-cluster certificate from a private CA, which `verify-full` rejects.
2. https://codefloe.com/rpkgs/bincraft/pulls/226 must be released: `local/install-bincraft.R` installs the latest tag, and older releases neither pass a root certificate nor export `postgres_sslrootcert()`.
3. #234 must be merged.
Merging early fails every database connection in CI, and since #234 per-minor reindex failures fail the pipeline.
Reviewed-on: #235
- Pass `metadata_db_*` explicitly to every per-minor `upload_package_index()` call, so bincraft can drop its implicit production defaults (rpkgs/bincraft#211).
- Replace `|| true` in the per-minor reindex loops with a failure list, so every minor is still attempted but a failed reindex fails the step.
- Give the "Upload package indexes" step of build-all-versions the `PGPASS` secret, without which its per-minor reindexes always aborted.
- Run the CDN purge in process-updates and prune-stale-flat-binaries even when a reindex failed, as reindex.yaml already does.
- Fail local/repair-built-stamp.R when a per-minor reindex fails instead of only printing the error.