build

.woodpecker/build-redhat-8-arm64.yaml

@@ -63,7 +63,7 @@ steps:
       - R -q -e 'packageVersion("bincraftR")'
       - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
       # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd'
-      - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL, repos = structure(c(devxy = 'https://cran.devxy.io/arm64/rhel8/latest', CRAN = 'https://cloud.r-project.org'))); library(dplyr); library(bincraftR); cran_pkgs = tools::CRAN_package_db()[['Package']]; '%nin%' <- Negate('%in%'); foo = query_metadata_table() |> filter(platform == 'redhat-8', arch == 'arm64') |> distinct(name) |> pull(name); pkgs <- dput(cran_pkgs[cran_pkgs %nin% foo][0:300]); options(progressr.enable = TRUE); pkgs = c('excel.link', 'facmodTS', 'fastFMM', 'FIESTA', 'FIESTAutils',  'filters', 'finch', 'fitbitViz', 'fitlandr', 'forestdata', 'FORTLS',  'FPCdpca', 'frscore', 'fsbrain', 'fsn', 'FTSgof', 'FuzzyImputationTest',  'geoidep', 'geojson', 'geojsonio', 'geppe', 'gerbil', 'ggfacto',  'ggpicrust2', 'glmtoolbox', 'googletraffic', 'gp', 'gpg', 'gpuR',  'handwriterApp', 'handwriterRF', 'HDiR', 'highd2means', 'hillshader',  'HLAtools', 'hypergeo2', 'imbalanceDatRel', 'IMIFA', 'InteRD',  'interpolation', 'irtQ', 'jack', 'kDGLM', 'KeyboardSimulator',  'KMD', 'KPC', 'KSgeneral', 'lgpr', 'LipidomicsR', 'LorMe', 'mapping',  'mathml', 'matRiks', 'mbr', 'mcradds', 'MDSGUI', 'MediaNews',  'mergedblocks', 'metaGE', 'metajam', 'meteo', 'MetSizeR', 'mfpp',  'micd', 'miceRanger', 'minired', 'mixgb', 'mixpoissonreg', 'MLE',  'mlmts', 'MMOC', 'MN', 'moc.gapbk', 'modgo', 'ModTools', 'MonoPhy',  'morphomap', 'mregions2', 'multibiplotGUI', 'mvcauchy', 'mvcor',  'mvhtests', 'naive', 'nebula', 'negligible', 'neo4jshell', 'nesRdata',  'nestedcv', 'NetFACS', 'NetSci', 'nflverse', 'NGBVS', 'NGCHM',  'nlgm', 'nlmixr2', 'nlmixr2plot', 'nmrrr', 'npcurePK', 'obfuscatoR',  'OpenCL', 'parTimeROC', 'Patterns', 'pbANOVA', 'pcaL1', 'pcds.ugraph',  'pchc', 'PCRA', 'pgKDEsphere', 'phylotypr', 'phylter', 'plumberDeploy',  'PNAR', 'polyhedralCubature', 'popstudy', 'PoweREST', 'PPbigdata',  'ppsbm', 'praatpicture', 'practicalSigni', 'PRTree', 'qspray',  'qsub', 'QUALYPSO', 'R2PPT', 'R2wd', 'Racmacs', 'RandomWalker',  'RankAggSIgFUR', 'RAppArmor', 'RationalMatrix', 'ratioOfQsprays',  'ravetools', 'raymolecule', 'Rblpapi', 'Rcatch22', 'rcccd', 'rcompanion',  'rcontroll', 'Rcplex', 'RcppCWB', 'RcppMagicEnum', 'rdflib',  'Rdimtools', 'RDM', 'redland', 'regda', 'resultant', 'Rfast2',  'rFUSION', 'Riemann', 'RInno', 'rmapzen', 'rmarchingcubes', 'RmecabKo',  'Rmpi', 'robin', 'RobRegression', 'robustarima', 'ROI.plugin.cplex',  'ROI.plugin.qpoases', 'ROI.plugin.symphony', 'ROracle', 'RPatternJoin',  'RQuantLib', 'RSP', 'RSquaredMI', 'rStrava', 'Rsymphony', 'rties',  'Rtropical', 'rvMF', 'RWinEdt', 'satdad', 'scDIFtest', 'scMappR',  'segen', 'SEIRfansy', 'SelectBoost', 'SEMdeep', 'sendigR', 'seq2R',  'sevenbridges2', 'SherlockHolmes', 'shiny.benchmark', 'shinyExprPortal',  'shinyIRT', 'shinylive', 'shinyMixR', 'shinyQueryBuilder', 'shinytest2',  'shrinkTVPVAR', 'SIAmodules', 'simCAT', 'simDAG', 'SimNPH', 'smartsnp',  'smcryptoR', 'smvgraph', 'SOMMD', 'SpaCCI', 'spaceNet', 'sparseCov',  'spaths', 'spectralR', 'Spectran', 'spectrino', 'Spectrum', 'splusTimeSeries',  'spStack', 'ssh', 'SSHAARP', 'stppSim', 'surveyvoi', 'symbolicQspray',  'T4cluster', 'tabxplor', 'tame', 'taskscheduleR', 'TDAkit', 'theft',  'theftdlc', 'tidyclust', 'tiledb', 'TML', 'Toothnroll', 'TreeDimensionTest',  'triptych', 'trtswitch', 'truh', 'TSCI', 'tsmarch', 'tspredit',  'twl', 'UBayFS', 'valhallr', 'voiceR', 'vvdoctor', 'WaverideR',  'WCluster', 'webglobe', 'WRI'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'redhat-8'))"
+      - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs = c('adamethods', 'adaptIVPT', 'adelie', 'AFM', 'aIc', 'alphashape3d',  'amadeus', 'antaresProcessing', 'Anthropometry', 'Apollonius',  'appeears', 'archeoViz', 'archive', 'Arothron', 'atom4R', 'autoslider.core',  'BAwiR', 'bcROCsurface', 'bigGP', 'bigrquerystorage', 'biplotbootGUI',  'BiplotGUI', 'blatr', 'bpca', 'bRacatus', 'brainKCCA', 'brainR',  'BRugs', 'CAESAR.Suite', 'candisc', 'Certara.R', 'Certara.RsNLME',  'ChaosGame', 'cheem', 'circularEV', 'ClaimsProblems', 'clrng',  'ClusROC', 'ClusterStability', 'cncaGUI', 'concom', 'condor',  'ConfidenceEllipse', 'ConsRank', 'ConsRankClass', 'controlfunctionIV',  'CovTools', 'cppcontainers', 'cubing', 'curvHDR', 'D3mirt', 'dataone',  'datapack', 'dbcsp', 'DIDmultiplegtDYN', 'DiscreteFWER', 'do3PCA',  'doMPI', 'doolkit', 'dymo', 'ecocomDP', 'eDITH', 'eegkit', 'espadon',  'ETRep', 'Evomorph', 'excel.link', 'export', 'fabisearch', 'fdaPDE',  'filters', 'fingerPro', 'fitbitViz', 'forestdata', 'FPCdpca',  'frontiles', 'fsbrain', 'FTSgof', 'gellipsoid', 'gensphere',  'geoelectrics', 'geojsonio', 'geomorph', 'GoodFibes', 'gpg',  'GPGame', 'GPoM', 'gpuR', 'Greymodels', 'gyro', 'HDiR', 'hillshader',  'HUM', 'HybridMicrobiomes', 'hyper.fit', 'hypergeo2', 'ICSClust',  'interpolation', 'IOLS', 'ivdoctr', 'JFM', 'JSDNE', 'kernhaz',  'KernSmoothIRT', 'KeyboardSimulator', 'kml3d', 'kpcaIG', 'lgpr',  'LSAfun', 'Maeswrap', 'maotai', 'mapping', 'mathml', 'mcauchyd',  'MDSGUI', 'MDSMap', 'MediaNews', 'metadynminer3d', 'metajam',  'MetSizeR', 'mggd', 'minired', 'MLE', 'moc.gapbk', 'molaR', 'morph',  'Morpho', 'morphomap', 'MorphoTools2', 'mregions2', 'mstudentd',  'mully', 'multibiplotGUI', 'MultiscaleDTM', 'MultivariateAnalysis',  'mvhist', 'mvinfluence', 'mvmesh', 'nat', 'nat.nblast', 'nat.templatebrains',  'neo4jshell', 'nesRdata', 'NetSci', 'NGCHM', 'OceanView', 'OCNet',  'OmopViewer', 'OpenCL', 'optBiomarker', 'optiSolve', 'orthoDr',  'outliers.ts.oga', 'particle.swarm.optimisation', 'patternize',  'pcaL1', 'pgKDEsphere', 'phylotypr', 'plot3Drgl', 'plumberDeploy',  'PolisheR', 'polyhedralCubature', 'PPbigdata', 'practicalSigni',  'predict3d', 'PRTree', 'prWarp', 'qspray', 'qsub', 'qtlc', 'R2PPT',  'R2wd', 'Racmacs', 'RationalMatrix', 'ratioOfQsprays', 'ravetools',  'rayshader', 'Rcplex', 'RcppMagicEnum', 'rdflib', 'redatamx',  'redland', 'refreg', 'resultant', 'rFUSION', 'rgl2gltf', 'rglplus',  'Riemann', 'rivnet', 'rmapzen', 'Rmpi', 'rmutil', 'RMVL', 'rMVP',  'RMySQL', 'Rnanoflann', 'RNCBIEUtilsLibs', 'rncl', 'rnetcarto',  'RNetCDF', 'RNetLogo', 'rngWELL', 'RNifti', 'RNiftyReg', 'Rnmr1D',  'rnndescent', 'robCompositions', 'RobExtremes', 'robfilter',  'RobGARCHBoot', 'RobKF', 'RoBMA', 'robmixglm', 'roboBayes', 'robregcc',  'RoBSA', 'robsel', 'robslopes', 'RobStatTM', 'robStepSplitReg',  'robsurvey', 'robust', 'RobustAFT', 'robustbase', 'robustBLME',  'RobustCalibration', 'robustcov', 'robusTest', 'robustETM', 'RobustGaSP',  'robustHD', 'robustmatrix', 'robustrank', 'robustvarComp', 'RockFab',  'rococo', 'rocTree', 'rofanova', 'Rogue', 'ROI.plugin.cplex',  'ROI.plugin.symphony', 'roll', 'rolog', 'Rook', 'rootSolve',  'Ropj', 'roptim', 'ROracle', 'rotasym', 'rotations', 'RoughSets',  'round', 'RPatternJoin', 'Rpdb', 'RPointCloud', 'Rpolyhedra',  'rpyANTs', 'RQuantLib', 'rsat', 'RSDK', 'rsofun', 'RSP', 'rsparse',  'RSpectra', 'rSpectral', 'Rssa', 'RSSL', 'rstan', 'rstanarm',  'rstanbdp', 'rstanemax', 'rstiefel', 'RStoolbox', 'rStrava',  'rstream', 'rsubgroup', 'rsvddpd', 'rsvg', 'Rsymphony', 'rsyslog',  'RTCC', 'rtdists', 'RTextTools', 'rtk', 'rtkore', 'rTLsDeep',  'RTMB', 'rtmpt', 'rtop', 'RTransferEntropy', 'rtrend', 'RTriangle',  'rTRNG', 'rts2', 'RTSA', 'Rtsne', 'Rttf2pt1', 'rTwig', 'Rtwobitlib',  'rubias'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'redhat-8'))"
       ### Manual pkg builds
       # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
       # RInno: Windows-only