From b305411fbe29a0b69515c90b03143c776cf75276 Mon Sep 17 00:00:00 2001 From: pat-s Date: Sun, 1 Dec 2024 18:32:27 +0100 Subject: [PATCH] build --- .woodpecker/build-alpine-320-amd64.yaml | 2 +- .woodpecker/build-alpine-320-arm64.yaml | 2 +- .woodpecker/build-redhat-8-amd64.yaml | 2 +- .woodpecker/build-redhat-8-arm64.yaml | 2 +- .woodpecker/build-redhat-9-amd64.yaml | 2 +- .woodpecker/build-redhat-9-arm64.yaml | 2 +- .woodpecker/build-ubuntu-2204-amd64.yaml | 2 +- .woodpecker/build-ubuntu-2204-arm64.yaml | 2 +- .woodpecker/build-ubuntu-2404-amd64.yaml | 2 +- .woodpecker/build-ubuntu-2404-arm64.yaml | 2 +- 10 files changed, 10 insertions(+), 10 deletions(-) diff --git a/.woodpecker/build-alpine-320-amd64.yaml b/.woodpecker/build-alpine-320-amd64.yaml index da8816a..716335b 100644 --- a/.woodpecker/build-alpine-320-amd64.yaml +++ b/.woodpecker/build-alpine-320-amd64.yaml @@ -40,7 +40,7 @@ steps: - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd' - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))' - - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); pkgs = c('xgboost'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc', 'RVAideMemoire', 'pbkrtest', 'seewave', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-320'))" + - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); pkgs = c('actel', 'AdhereRViz', 'ajv', 'AlleleShift', 'almanac', 'AntMAN', 'aPCoA', 'apisensr', 'appeears', 'asciicast', 'audubon', 'autoslider.core', 'autostats', 'badgen', 'baguette', 'bartCause', 'bartMan', 'base64', 'bate', 'BayesXsrc', 'bdl', 'behaviorchange', 'bigGP', 'biocompute', 'BiplotGUI', 'blackmarbler', 'blatr', 'bpmnR', 'bRacatus', 'BRugs', 'C50', 'canadamaps', 'CaseBasedReasoning', 'causalHyperGraph', 'causalPAF', 'centerline', 'cffr', 'chilemapas', 'cisp', 'clrng', 'countSTAR', 'CRE', 'CTRing', 'dartR', 'dartR.base', 'dartR.captive', 'dartR.popgen', 'dartR.sexlinked', 'dartR.sim', 'dartR.spatial', 'DGP4LCF', 'DoE.wrapper', 'doMPI', 'EBcoBART', 'ebmc', 'ecocomDP', 'eDITH', 'EFAfactors', 'enerscape', 'epidm', 'epizootic', 'EthSEQ', 'excel.link', 'eyetools', 'fangs', 'fingerPro', 'fmf', 'FrF2.catlg128', 'GENLIB', 'ggESDA', 'glossa', 'gpuR', 'GTFSwizard', 'gto', 'gtreg', 'gwid', 'habtools', 'hdf5r', 'hdf5r.Extra', 'hwig', 'ical', 'ieegio', 'imbalanceDatRel', 'intamapInteractive', 'integr', 'intRinsic', 'intSDM', 'jrSiCKLSNMF', 'js', 'JSconsole', 'jsonld', 'jsonNormalize', 'jsonvalidate', 'juicedown', 'juicyjuice', 'katex', 'kazaam', 'KeyboardSimulator', 'lgpr', 'LPDynR', 'lucas', 'mapping', 'MazamaLocationUtils', 'MazamaSpatialPlots', 'MazamaSpatialUtils', 'MDSGUI', 'medfateland', 'MediaNews', 'Mega2R', 'MetabolomicsBasics', 'metajam', 'midoc', 'minired', 'MMOC', 'moc.gapbk', 'ModTools', 'Morphoscape', 'movegroup', 'MPCR', 'nfl4th', 'nflverse', 'noisemodel', 'OpenCL', 'palaeoverse', 'pastclim', 'pbdMPI', 'pbdSLAP', 'pcaL1', 'pgenlibr', 'pheble', 'phonics', 'plotBart', 'pmclust', 'postdoc', 'PPRL', 'praatpicture', 'predhy.GUI', 'presenter', 'PRISMA2020', 'prismjs', 'R2PPT', 'R2wd', 'Racmacs', 'randomcoloR', 'ravetools', 'Rblpapi', 'rblt', 'RcmdrPlugin.cpd', 'RcmdrPlugin.GWRM', 'RcmdrPlugin.TeachStat', 'RcmdrPlugin.WorldFlora', 'Rcplex', 'RcppCWB', 'RcppMeCab', 'readNSx', 'redatamx', 'ReSurv', 'rFUSION', 'riAFTBART', 'rjade', 'rless', 'rliger', 'rmapshaper', 'rmapzen', 'RmecabKo', 'Rmpi', 'ROI.plugin.cplex', 'ROI.plugin.symphony', 'ROracle', 'Rpoppler', 'RQuantLib', 'rsofun', 'RSP', 'Rsymphony', 'rWCVP', 'RWinEdt', 'SANple', 'sarsop', 'Scalelink', 'secsse', 'SEMdeep', 'SEMgraph', 'SHAPforxgboost', 'shapviz', 'shiny.benchmark', 'shinytest2', 'shrinkTVPVAR', 'simplePHENOTYPES', 'SiMRiv', 'snplinkage', 'spectrino', 'stan4bart', 'stratastats', 'StratifiedRF', 'sugarbag', 'surveyvoi', 'tableschema.r', 'taskscheduleR', 'tern.rbmi', 'tesseract', 'tfrmtbuilder', 'TidyConsultant', 'tiledb', 'TKCat', 'tkImgR', 'tkRplotR', 'twdtw', 'tweetcheck', 'uaparserjs', 'V8', 'valhallr', 'voi', 'vol2birdR', 'vtree', 'xRing'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc', 'RVAideMemoire', 'pbkrtest', 'seewave', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-320'))" ### Manual pkg builds # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178 # RInno: Windows-only diff --git a/.woodpecker/build-alpine-320-arm64.yaml b/.woodpecker/build-alpine-320-arm64.yaml index 0d74ee6..e490e32 100644 --- a/.woodpecker/build-alpine-320-arm64.yaml +++ b/.woodpecker/build-alpine-320-arm64.yaml @@ -64,7 +64,7 @@ steps: - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))' # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd' - - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); library(dplyr); library(bincraftR); pkgs = c('abmR', 'abn', 'abstr', 'abstractr', 'acdcR', 'ActCR', 'actel', 'activAnalyzer', 'actxps', 'acumos', 'adapt4pv', 'add2ggplot', 'adepro', 'adespatial', 'AdhereRViz', 'adw', 'africamonitor', 'ag5Tools', 'agriwater', 'aIc', 'AirExposure', 'ajv', 'alcyon', 'AlleleShift', 'almanac', 'alookr', 'altR2', 'amadeus', 'amt', 'angstroms', 'animalEKF', 'anipaths', 'AntMAN', 'APCalign', 'apcf', 'aPCoA', 'apisensr', 'Apollonius', 'appeears', 'AquaBEHER', 'arakno', 'arcgisgeocode', 'archive', 'arcpbf', 'areal', 'arealDB', 'aroma.affymetrix', 'aroma.cn', 'aroma.core', 'ARPALData', 'arrangements', 'artfima', 'asciicast', 'assignR', 'atakrig', 'atom4R', 'atpolR', 'audrex', 'audubon', 'autoBagging', 'autostats', 'av', 'AVGAS', 'aws', 'aws.wrfsmn', 'b64', 'badgen', 'baguette', 'bamm', 'BANAM', 'bangladesh', 'banter', 'bartCause', 'bartMan', 'base64', 'basemaps', 'basf', 'basifoR', 'bate', 'BAwiR', 'BayesfMRI', 'BayesOrdDesign', 'BayesVarSel', 'BayesXsrc', 'bbl', 'bcdata', 'bdc', 'bdl', 'BeeBDC', 'behaviorchange', 'bfboinet', 'bfsMaps', 'BIEN', 'bigDM', 'bigGP', 'bigrquerystorage', 'biocompute', 'biopixR', 'BioPred', 'bioregion', 'BiplotGUI', 'blackmarbler', 'blatr', 'blockCV', 'BoolFilter', 'boostingDEA', 'bpmnR', 'bRacatus', 'bratteli', 'BRBVS', 'brickster', 'brsim', 'BRugs', 'bs4Dash', 'BSPADATA', 'BSSoverSpace', 'BSTZINB', 'C50', 'CAinterprTools', 'Cairo', 'calendRio', 'calmate', 'camcorder', 'camtrapR', 'canadamaps', 'capm', 'carbonate', 'cartograflow', 'cartogram', 'cartogramR', 'cascsim', 'CaseBasedReasoning', 'cases', 'cati', 'catSurv', 'cauchypca', 'CausalGPS', 'causalHyperGraph', 'causalPAF', 'caviarpd', 'cbl', 'CCAMLRGIS', 'CCd', 'ccrs', 'cdlTools', 'cds', 'CDsampling', 'CDSE', 'CEEMDANML', 'cellKey', 'cellularautomata', 'censorcopula', 'CensSpatial', 'centerline', 'ceramic', 'CERFIT', 'Certara.RsNLME', 'cffdrs', 'cffr', 'cft', 'chatAI4R', 'ChernoffDist', 'chilemapas', 'chirps', 'chooseGCM', 'choosepc', 'CIMTx', 'cisp', 'cit', 'clarabel', 'cld3', 'cleangeo', 'cleanTS', 'clhs', 'ClickHouseHTTP', 'climateStability', 'CLimd', 'climetrics', 'clinDataReview', 'clrng', 'clusterMI', 'clustermole', 'clustTMB', 'ClusVis', 'CLVTools', 'cmprskcoxmsm', 'cmsaf', 'cmsafops', 'cnmap', 'CoastlineFD', 'CoClust', 'cohorttools', 'CoImp', 'colocr', 'colorfindr', 'colorist', 'colorizer', 'colormap', 'cols', 'comorosmaps', 'CompareMultipleModels', 'Compositional', 'CompositionalML', 'CompositionalRF', 'concaveman', 'ConcordanceTest', 'conmet', 'conos', 'consrq', 'constrainedKriging', 'ContaminatedMixt', 'conversim', 'cooltools', 'CoordinateCleaner', 'CopCTS', 'CopernicusDEM', 'CopulaCenR', 'copulaedas', 'coreCT', 'corrfuns', 'cosso', 'COST', 'countSTAR', 'covalchemy', 'coveR2', 'covid19india', 'CPC', 'cpmr', 'cppcheckR', 'cpss', 'CRE', 'creditmodel', 'crimeutils', 'CRMetrics', 'cropcircles', 'cropDemand', 'cropZoning', 'crsuggest', 'crumble', 'cruts', 'crwbmetareg', 'csa', 'cshapes', 'CSHShydRology', 'csmpv', 'CSTools', 'CTD', 'ctmcmove', 'ctmm', 'ctpm', 'ctrdata', 'CTRing', 'cubble', 'cubeview', 'cubing', 'CvmortalityMult', 'cylcop', 'cytometree', 'd4storagehub4R', 'DA', 'daff', 'dagitty', 'dagwood', 'daltoolboxdp', 'damAOI', 'dartR', 'dartR.base', 'dartR.captive', 'dartR.data', 'dartR.popgen', 'dartR.sexlinked', 'dartR.sim', 'dartR.spatial', 'datacleanr', 'dataone', 'datapack', 'datasetjson', 'dataspice', 'dbarts', 'DBHC', 'dblr', 'dbnlearn', 'dc3net', 'DCLEAR', 'DCluster', 'DClusterm', 'dcortools', 'dcorVS', 'dCovTS', 'ddml', 'DDPNA', 'deaR', 'decompDL', 'decomposedPSF', 'deducorrect', 'DeepLearningCausal', 'deepMOU', 'deforestable', 'delayed', 'dendroNetwork'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'doBy', 'DoE.base', 'DoE.wrapper', 'eha', 'FrF2', 'FrF2.catlg128', 'gRbase', 'gRain', 'IDPmisc', 'pbkrtest', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-320'))" + - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); library(dplyr); library(bincraftR); pkgs = c('AlleleShift', 'AntMAN', 'aPCoA', 'apisensr', 'autoslider.core', 'baguette', 'bartCause', 'bartMan', 'base64', 'BayesXsrc', 'bdl', 'bigGP', 'BiplotGUI', 'blackmarbler', 'blatr', 'BLCOP', 'blender', 'Blendstat', 'blindrecalc', 'blindreview', 'blink', 'bliss', 'blm', 'blme', 'blmeco', 'BLModel', 'blob', 'blockcluster', 'BlockCov', 'blockForest', 'blocklength', 'blockmatrix', 'BlockMissingData', 'blockmodeling', 'BlockmodelingGUI', 'blockmodels', 'blockrand', 'blocksdesign', 'blocs', 'blogdown', 'BLOQ', 'BLPestimatoR', 'BLR', 'blrm', 'BLRPM', 'BLRShiny', 'BLRShiny2', 'blsBandit', 'blscrapeR', 'BLSM', 'blsR', 'bltm', 'bluebike', 'BlythStillCasellaCI', 'BMA', 'bmabasket', 'BMAmevt', 'bmass', 'BMconcor', 'bmem', 'bmemLavaan', 'bmet', 'bmgarch', 'bmggum', 'BMisc', 'bmixture', 'bmlm', 'bmm', 'bmp', 'BMRBr', 'BMRMM', 'BMS', 'bmscstan', 'bmstdr', 'BMT', 'BMTAR', 'bnclassify', 'bndesr', 'bndovb', 'bnlearn', 'bnma', 'bnmonitor', 'bnnSurvival', 'bnpa', 'BNPdensity', 'BNPmix', 'bnpsd', 'BNPTSclust', 'BNrich', 'BNSL', 'BNSP', 'bnstruct', 'bnviewer', 'boa', 'BoardGames', 'bodenmiller', 'Bodi', 'bodsr', 'bodycomp', 'bodycompref', 'boggy', 'boilerpipeR', 'BOIN', 'boinet', 'boiwsa', 'BOJ', 'bolasso', 'bolsec', 'Bolstad2', 'BoltzMM', 'bondAnalyst', 'BondValuation', 'BoneProfileR', 'BonEV', 'bonn', 'bonsai', 'bonsaiforest', 'BRugs', 'bscui', 'C50', 'CaseBasedReasoning', 'causalHyperGraph', 'clrng', 'ConvertPar', 'CoTiMA', 'countSTAR', 'CRE', 'ctgdist', 'CTRing', 'D3mirt', 'dartR', 'dartR.base', 'dartR.captive', 'dartR.popgen', 'dartR.sexlinked', 'dartR.sim', 'dartR.spatial', 'DFIT', 'DGP4LCF', 'DoE.wrapper', 'doMPI', 'EBcoBART', 'ebmc', 'ecocomDP', 'eDITH', 'EFA.dimensions', 'EFAfactors', 'enerscape', 'epidm', 'epizootic', 'equateIRT', 'EthSEQ', 'excel.link', 'eyetools', 'fangs', 'faoutlier', 'filters', 'fingerPro', 'flow', 'fmf', 'FrF2.catlg128', 'GENLIB', 'ggESDA', 'giacR', 'glossa', 'gpuR', 'GTFSwizard', 'gwid', 'habtools', 'hdf5r', 'hdf5r.Extra', 'ieegio', 'imbalanceDatRel', 'intRinsic', 'intSDM', 'jrSiCKLSNMF', 'kazaam', 'KeyboardSimulator', 'lgpr', 'mapping', 'MazamaSpatialPlots', 'MDSGUI', 'medfateland', 'MediaNews', 'Mega2R', 'MetabolomicsBasics', 'midoc', 'minired', 'moc.gapbk', 'ModTools', 'movegroup', 'MPCR', 'nfl4th', 'nflverse', 'noisemodel', 'OpenCL', 'pastclim', 'pbdMPI', 'pbdSLAP', 'pcaL1', 'pgenlibr', 'pheble', 'phonics', 'plotBart', 'pmclust', 'PPRL', 'praatpicture', 'predhy.GUI', 'R2PPT', 'R2wd', 'ravetools', 'Rbeast', 'Rblpapi', 'rblt', 'RcmdrPlugin.cpd', 'RcmdrPlugin.GWRM', 'RcmdrPlugin.TeachStat', 'RcmdrPlugin.WorldFlora', 'Rcplex', 'RcppCWB', 'RcppMeCab', 'readNSx', 'redatamx', 'ReSurv', 'rFUSION', 'riAFTBART', 'RInno', 'rliger', 'rmarchingcubes', 'RmecabKo', 'Rmpi', 'ROI.plugin.cplex', 'ROI.plugin.qpoases', 'ROI.plugin.symphony', 'ROracle', 'Rpoppler', 'RPushbullet', 'RQuantLib', 'rsofun', 'RSP', 'Rsymphony', 'rWCVP', 'RWinEdt', 'SANple', 'sarsop', 'Scalelink', 'scDIFtest', 'secsse', 'sfadv', 'SGPdata', 'sgPLS', 'SGPR', 'sgpv', 'sgr', 'sgraph', 'sgsR', 'sgstar', 'sgt', 'shades', 'shadowr', 'shadowtext', 'shannon', 'ShapDoE', 'shape', 'ShapeChange', 'shapefiles', 'shapeNA', 'ShapePattern', 'shapeR', 'shapes', 'ShapeSelectForest', 'SHAPforxgboost', 'shapley', 'ShapleyOutlier', 'ShapleyValue', 'shapper', 'shapr', 'shapviz', 'shar', 'SharkDemography', 'sharp', 'sharpData', 'SharpeR', 'sharpeRratio', 'sharpPen', 'sharpr2', 'sharpshootR', 'sharx', 'shattering', 'shazam', 'SheetReader', 'SHELF', 'ShellChron', 'shelltrace', 'sherlock', 'SherlockHolmes', 'shidashi', 'shide', 'ShiftConvolvePoibin', 'shiftR'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'doBy', 'DoE.base', 'DoE.wrapper', 'eha', 'FrF2', 'FrF2.catlg128', 'gRbase', 'gRain', 'IDPmisc', 'pbkrtest', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd', 'spdep')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-320'))" ### Manual pkg builds # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178 # RInno, MediaNews: Windows-only diff --git a/.woodpecker/build-redhat-8-amd64.yaml b/.woodpecker/build-redhat-8-amd64.yaml index 1fe7af2..4215e32 100644 --- a/.woodpecker/build-redhat-8-amd64.yaml +++ b/.woodpecker/build-redhat-8-amd64.yaml @@ -41,7 +41,7 @@ steps: - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # biplotbootGUI: somehow ubuntu still hangs even when using xvfb-run # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd' - - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL, repos = structure(c(CRAN = 'https://cran.devxy.io/amd64/rhel8/latest'))); pkgs = c('rlang', 'bit', 'bit64', 'RSQLite', 'vctrs'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'later', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'redhat-8'))" + - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL, repos = structure(c(CRAN = 'https://cran.devxy.io/amd64/rhel8/latest'))); pkgs = c('adamethods', 'adaptIVPT', 'adelie', 'AFM', 'aIc', 'alphashape3d', 'amadeus', 'antaresProcessing', 'Anthropometry', 'Apollonius', 'appeears', 'archeoViz', 'archive', 'aroma.core', 'Arothron', 'atom4R', 'autoslider.core', 'BAwiR', 'bcROCsurface', 'bigGP', 'bigrquerystorage', 'biplotbootGUI', 'BiplotGUI', 'blatr', 'bpca', 'bRacatus', 'brainKCCA', 'brainR', 'BRugs', 'CAESAR.Suite', 'candisc', 'Certara.R', 'Certara.RsNLME', 'ChaosGame', 'cheem', 'circularEV', 'ClaimsProblems', 'clrng', 'ClusROC', 'ClusterStability', 'cncaGUI', 'concom', 'condor', 'ConfidenceEllipse', 'ConsRank', 'ConsRankClass', 'controlfunctionIV', 'CovTools', 'cppcontainers', 'cubing', 'curvHDR', 'D3mirt', 'dataone', 'datapack', 'dbcsp', 'DIDmultiplegtDYN', 'DiscreteFWER', 'do3PCA', 'doMPI', 'doolkit', 'dymo', 'ecocomDP', 'eDITH', 'eegkit', 'espadon', 'ETRep', 'Evomorph', 'excel.link', 'export', 'fabisearch', 'fdaPDE', 'filters', 'fingerPro', 'fitbitViz', 'forestdata', 'FPCdpca', 'frontiles', 'fsbrain', 'FTSgof', 'gellipsoid', 'gensphere', 'geoelectrics', 'geojsonio', 'geomorph', 'GoodFibes', 'gpg', 'GPGame', 'GPoM', 'gpuR', 'greta.censored', 'Greymodels', 'gyro', 'HDiR', 'hillshader', 'HUM', 'HybridMicrobiomes', 'hyper.fit', 'hypergeo2', 'ICSClust', 'interpolation', 'IOLS', 'ivdoctr', 'JFM', 'JSDNE', 'kernhaz', 'KernSmoothIRT', 'KeyboardSimulator', 'kml3d', 'kpcaIG', 'KSgeneral', 'lgpr', 'LSAfun', 'Maeswrap', 'maotai', 'mapping', 'mathml', 'mcauchyd', 'MDSGUI', 'MDSMap', 'MediaNews', 'metadynminer3d', 'metajam', 'MetSizeR', 'mggd', 'minired', 'MLE', 'moc.gapbk', 'molaR', 'morph', 'Morpho', 'morphomap', 'MorphoTools2', 'mregions2', 'mstudentd', 'mully', 'multibiplotGUI', 'MultiscaleDTM', 'MultivariateAnalysis', 'mvhist', 'mvinfluence', 'mvmesh', 'nat', 'nat.nblast', 'nat.templatebrains', 'neo4jshell', 'nesRdata', 'nestedcv', 'NetFACS', 'NetSci', 'NGBVS', 'NGCHM', 'nlgm', 'OceanView', 'OCNet', 'OmopViewer', 'OpenCL', 'optBiomarker', 'optiSolve', 'orthoDr', 'outliers.ts.oga', 'particle.swarm.optimisation', 'patternize', 'Patterns', 'pcaL1', 'pchc', 'pgKDEsphere', 'phylotypr', 'phylter', 'plot3Drgl', 'plumberDeploy', 'PNAR', 'PolisheR', 'polyhedralCubature', 'PPbigdata', 'ppsbm', 'practicalSigni', 'predict3d', 'PRTree', 'prWarp', 'qspray', 'qsub', 'qtlc', 'R2PPT', 'R2wd', 'Racmacs', 'RAINBOWR', 'RationalMatrix', 'ratioOfQsprays', 'ravetools', 'rayshader', 'Rcplex', 'RcppMagicEnum', 'rdflib', 'redatamx', 'redland', 'refreg', 'resultant', 'rFUSION', 'rgl2gltf', 'rglplus', 'Riemann', 'rivnet', 'rmapzen', 'Rmpi', 'robin', 'RobRegression', 'ROI.models.globalOptTests', 'ROI.plugin.cplex', 'ROI.plugin.neos', 'ROI.plugin.qpoases', 'ROI.plugin.symphony', 'rollinglda', 'ROracle', 'rotor', 'Rpadrino', 'RPatternJoin', 'RPEGLMEN', 'RPESE', 'RPointCloud', 'Rpoppler', 'rpyANTs', 'RQdeltaCT', 'RQuantLib', 'RRTCS', 'rsat', 'RSAtools', 'RSDK', 'rsofun', 'RSP', 'RSquaredMI', 'rStrava', 'Rsymphony', 'rties', 'rTLsDeep', 'Rtropical', 'rvMF', 'RWinEdt', 'scMappR', 'segen', 'SEMdeep', 'sendigR', 'shinyExprPortal', 'shinylive', 'shinyMixR', 'smvgraph', 'spaths', 'spectralR', 'spectrino', 'ssh', 'surveyvoi', 'symbolicQspray', 'T4cluster', 'taskscheduleR', 'TDAkit', 'TML', 'Toothnroll', 'triptych', 'tsmarch', 'TukeyRegion', 'uavRmp', 'UBayFS', 'UCSCXenaShiny', 'UnalR', 'valhallr', 'valueSetCompare', 'VICatMix', 'viewpoly', 'VIRF', 'vivid', 'voiceR', 'VOSONDash', 'vvauditor', 'vvcanvas', 'vvdoctor', 'W2CWM2C', 'wallace', 'WaveletETS', 'WaveletGBM', 'WaveletKNN', 'WaveletLSTM', 'WaveletMLbestFL', 'WaverideR', 'waves', 'WCluster', 'wdnr.gis', 'wearables', 'weatherOz', 'webglobe', 'webp', 'weed', 'WeibullFit', 'WeibullR.ALT', 'weightedCL', 'weightedGCM', 'weird', 'winch', 'windows.pls', 'worcs', 'WRI', 'wrTopDownFrag', 'WVPlots', 'wyz.code.metaTesting', 'wyz.code.rdoc', 'wyz.code.testthat', 'xdcclarge', 'xega', 'xegaDerivationTrees', 'xegaDfGene', 'xegaGaGene', 'xegaGeGene', 'xegaGpGene', 'xegaPermGene', 'xegaPopulation', 'xhaz', 'xmpdf', 'xslt', 'yhat', 'ypssc', 'zooimage'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'later', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'redhat-8'))" ### Manual pkg builds # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178 # RInno: Windows-only diff --git a/.woodpecker/build-redhat-8-arm64.yaml b/.woodpecker/build-redhat-8-arm64.yaml index 54f36bf..bc39750 100644 --- a/.woodpecker/build-redhat-8-arm64.yaml +++ b/.woodpecker/build-redhat-8-arm64.yaml @@ -63,7 +63,7 @@ steps: - R -q -e 'packageVersion("bincraftR")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd' - - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL, repos = structure(c(devxy = 'https://cran.devxy.io/arm64/rhel8/latest', CRAN = 'https://cloud.r-project.org'))); library(dplyr); library(bincraftR); cran_pkgs = tools::CRAN_package_db()[['Package']]; '%nin%' <- Negate('%in%'); foo = query_metadata_table() |> filter(platform == 'redhat-8', arch == 'arm64') |> distinct(name) |> pull(name); pkgs <- dput(cran_pkgs[cran_pkgs %nin% foo][0:300]); options(progressr.enable = TRUE); pkgs = c('excel.link', 'facmodTS', 'fastFMM', 'FIESTA', 'FIESTAutils', 'filters', 'finch', 'fitbitViz', 'fitlandr', 'forestdata', 'FORTLS', 'FPCdpca', 'frscore', 'fsbrain', 'fsn', 'FTSgof', 'FuzzyImputationTest', 'geoidep', 'geojson', 'geojsonio', 'geppe', 'gerbil', 'ggfacto', 'ggpicrust2', 'glmtoolbox', 'googletraffic', 'gp', 'gpg', 'gpuR', 'handwriterApp', 'handwriterRF', 'HDiR', 'highd2means', 'hillshader', 'HLAtools', 'hypergeo2', 'imbalanceDatRel', 'IMIFA', 'InteRD', 'interpolation', 'irtQ', 'jack', 'kDGLM', 'KeyboardSimulator', 'KMD', 'KPC', 'KSgeneral', 'lgpr', 'LipidomicsR', 'LorMe', 'mapping', 'mathml', 'matRiks', 'mbr', 'mcradds', 'MDSGUI', 'MediaNews', 'mergedblocks', 'metaGE', 'metajam', 'meteo', 'MetSizeR', 'mfpp', 'micd', 'miceRanger', 'minired', 'mixgb', 'mixpoissonreg', 'MLE', 'mlmts', 'MMOC', 'MN', 'moc.gapbk', 'modgo', 'ModTools', 'MonoPhy', 'morphomap', 'mregions2', 'multibiplotGUI', 'mvcauchy', 'mvcor', 'mvhtests', 'naive', 'nebula', 'negligible', 'neo4jshell', 'nesRdata', 'nestedcv', 'NetFACS', 'NetSci', 'nflverse', 'NGBVS', 'NGCHM', 'nlgm', 'nlmixr2', 'nlmixr2plot', 'nmrrr', 'npcurePK', 'obfuscatoR', 'OpenCL', 'parTimeROC', 'Patterns', 'pbANOVA', 'pcaL1', 'pcds.ugraph', 'pchc', 'PCRA', 'pgKDEsphere', 'phylotypr', 'phylter', 'plumberDeploy', 'PNAR', 'polyhedralCubature', 'popstudy', 'PoweREST', 'PPbigdata', 'ppsbm', 'praatpicture', 'practicalSigni', 'PRTree', 'qspray', 'qsub', 'QUALYPSO', 'R2PPT', 'R2wd', 'Racmacs', 'RandomWalker', 'RankAggSIgFUR', 'RAppArmor', 'RationalMatrix', 'ratioOfQsprays', 'ravetools', 'raymolecule', 'Rblpapi', 'Rcatch22', 'rcccd', 'rcompanion', 'rcontroll', 'Rcplex', 'RcppCWB', 'RcppMagicEnum', 'rdflib', 'Rdimtools', 'RDM', 'redland', 'regda', 'resultant', 'Rfast2', 'rFUSION', 'Riemann', 'RInno', 'rmapzen', 'rmarchingcubes', 'RmecabKo', 'Rmpi', 'robin', 'RobRegression', 'robustarima', 'ROI.plugin.cplex', 'ROI.plugin.qpoases', 'ROI.plugin.symphony', 'ROracle', 'RPatternJoin', 'RQuantLib', 'RSP', 'RSquaredMI', 'rStrava', 'Rsymphony', 'rties', 'Rtropical', 'rvMF', 'RWinEdt', 'satdad', 'scDIFtest', 'scMappR', 'segen', 'SEIRfansy', 'SelectBoost', 'SEMdeep', 'sendigR', 'seq2R', 'sevenbridges2', 'SherlockHolmes', 'shiny.benchmark', 'shinyExprPortal', 'shinyIRT', 'shinylive', 'shinyMixR', 'shinyQueryBuilder', 'shinytest2', 'shrinkTVPVAR', 'SIAmodules', 'simCAT', 'simDAG', 'SimNPH', 'smartsnp', 'smcryptoR', 'smvgraph', 'SOMMD', 'SpaCCI', 'spaceNet', 'sparseCov', 'spaths', 'spectralR', 'Spectran', 'spectrino', 'Spectrum', 'splusTimeSeries', 'spStack', 'ssh', 'SSHAARP', 'stppSim', 'surveyvoi', 'symbolicQspray', 'T4cluster', 'tabxplor', 'tame', 'taskscheduleR', 'TDAkit', 'theft', 'theftdlc', 'tidyclust', 'tiledb', 'TML', 'Toothnroll', 'TreeDimensionTest', 'triptych', 'trtswitch', 'truh', 'TSCI', 'tsmarch', 'tspredit', 'twl', 'UBayFS', 'valhallr', 'voiceR', 'vvdoctor', 'WaverideR', 'WCluster', 'webglobe', 'WRI'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'redhat-8'))" + - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs = c('adamethods', 'adaptIVPT', 'adelie', 'AFM', 'aIc', 'alphashape3d', 'amadeus', 'antaresProcessing', 'Anthropometry', 'Apollonius', 'appeears', 'archeoViz', 'archive', 'Arothron', 'atom4R', 'autoslider.core', 'BAwiR', 'bcROCsurface', 'bigGP', 'bigrquerystorage', 'biplotbootGUI', 'BiplotGUI', 'blatr', 'bpca', 'bRacatus', 'brainKCCA', 'brainR', 'BRugs', 'CAESAR.Suite', 'candisc', 'Certara.R', 'Certara.RsNLME', 'ChaosGame', 'cheem', 'circularEV', 'ClaimsProblems', 'clrng', 'ClusROC', 'ClusterStability', 'cncaGUI', 'concom', 'condor', 'ConfidenceEllipse', 'ConsRank', 'ConsRankClass', 'controlfunctionIV', 'CovTools', 'cppcontainers', 'cubing', 'curvHDR', 'D3mirt', 'dataone', 'datapack', 'dbcsp', 'DIDmultiplegtDYN', 'DiscreteFWER', 'do3PCA', 'doMPI', 'doolkit', 'dymo', 'ecocomDP', 'eDITH', 'eegkit', 'espadon', 'ETRep', 'Evomorph', 'excel.link', 'export', 'fabisearch', 'fdaPDE', 'filters', 'fingerPro', 'fitbitViz', 'forestdata', 'FPCdpca', 'frontiles', 'fsbrain', 'FTSgof', 'gellipsoid', 'gensphere', 'geoelectrics', 'geojsonio', 'geomorph', 'GoodFibes', 'gpg', 'GPGame', 'GPoM', 'gpuR', 'Greymodels', 'gyro', 'HDiR', 'hillshader', 'HUM', 'HybridMicrobiomes', 'hyper.fit', 'hypergeo2', 'ICSClust', 'interpolation', 'IOLS', 'ivdoctr', 'JFM', 'JSDNE', 'kernhaz', 'KernSmoothIRT', 'KeyboardSimulator', 'kml3d', 'kpcaIG', 'lgpr', 'LSAfun', 'Maeswrap', 'maotai', 'mapping', 'mathml', 'mcauchyd', 'MDSGUI', 'MDSMap', 'MediaNews', 'metadynminer3d', 'metajam', 'MetSizeR', 'mggd', 'minired', 'MLE', 'moc.gapbk', 'molaR', 'morph', 'Morpho', 'morphomap', 'MorphoTools2', 'mregions2', 'mstudentd', 'mully', 'multibiplotGUI', 'MultiscaleDTM', 'MultivariateAnalysis', 'mvhist', 'mvinfluence', 'mvmesh', 'nat', 'nat.nblast', 'nat.templatebrains', 'neo4jshell', 'nesRdata', 'NetSci', 'NGCHM', 'OceanView', 'OCNet', 'OmopViewer', 'OpenCL', 'optBiomarker', 'optiSolve', 'orthoDr', 'outliers.ts.oga', 'particle.swarm.optimisation', 'patternize', 'pcaL1', 'pgKDEsphere', 'phylotypr', 'plot3Drgl', 'plumberDeploy', 'PolisheR', 'polyhedralCubature', 'PPbigdata', 'practicalSigni', 'predict3d', 'PRTree', 'prWarp', 'qspray', 'qsub', 'qtlc', 'R2PPT', 'R2wd', 'Racmacs', 'RationalMatrix', 'ratioOfQsprays', 'ravetools', 'rayshader', 'Rcplex', 'RcppMagicEnum', 'rdflib', 'redatamx', 'redland', 'refreg', 'resultant', 'rFUSION', 'rgl2gltf', 'rglplus', 'Riemann', 'rivnet', 'rmapzen', 'Rmpi', 'rmutil', 'RMVL', 'rMVP', 'RMySQL', 'Rnanoflann', 'RNCBIEUtilsLibs', 'rncl', 'rnetcarto', 'RNetCDF', 'RNetLogo', 'rngWELL', 'RNifti', 'RNiftyReg', 'Rnmr1D', 'rnndescent', 'robCompositions', 'RobExtremes', 'robfilter', 'RobGARCHBoot', 'RobKF', 'RoBMA', 'robmixglm', 'roboBayes', 'robregcc', 'RoBSA', 'robsel', 'robslopes', 'RobStatTM', 'robStepSplitReg', 'robsurvey', 'robust', 'RobustAFT', 'robustbase', 'robustBLME', 'RobustCalibration', 'robustcov', 'robusTest', 'robustETM', 'RobustGaSP', 'robustHD', 'robustmatrix', 'robustrank', 'robustvarComp', 'RockFab', 'rococo', 'rocTree', 'rofanova', 'Rogue', 'ROI.plugin.cplex', 'ROI.plugin.symphony', 'roll', 'rolog', 'Rook', 'rootSolve', 'Ropj', 'roptim', 'ROracle', 'rotasym', 'rotations', 'RoughSets', 'round', 'RPatternJoin', 'Rpdb', 'RPointCloud', 'Rpolyhedra', 'rpyANTs', 'RQuantLib', 'rsat', 'RSDK', 'rsofun', 'RSP', 'rsparse', 'RSpectra', 'rSpectral', 'Rssa', 'RSSL', 'rstan', 'rstanarm', 'rstanbdp', 'rstanemax', 'rstiefel', 'RStoolbox', 'rStrava', 'rstream', 'rsubgroup', 'rsvddpd', 'rsvg', 'Rsymphony', 'rsyslog', 'RTCC', 'rtdists', 'RTextTools', 'rtk', 'rtkore', 'rTLsDeep', 'RTMB', 'rtmpt', 'rtop', 'RTransferEntropy', 'rtrend', 'RTriangle', 'rTRNG', 'rts2', 'RTSA', 'Rtsne', 'Rttf2pt1', 'rTwig', 'Rtwobitlib', 'rubias'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'redhat-8'))" ### Manual pkg builds # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178 # RInno: Windows-only diff --git a/.woodpecker/build-redhat-9-amd64.yaml b/.woodpecker/build-redhat-9-amd64.yaml index 6c2ff41..0716421 100644 --- a/.woodpecker/build-redhat-9-amd64.yaml +++ b/.woodpecker/build-redhat-9-amd64.yaml @@ -38,7 +38,7 @@ steps: - R -q -e 'packageVersion("bincraftR")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd' - - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL, repos = structure(c(CRAN = 'https://cran.devxy.io/$ARCH/rhel9/latest'))); pkgs = c('paws.common', 'paws.storage', 'rlang', 'bit', 'bit64', 'RSQLite', 'vctrs'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'redhat-9'))" + - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL, repos = structure(c(CRAN = 'https://cran.devxy.io/$ARCH/rhel9/latest'))); pkgs = c('aIc', 'antaresProcessing', 'atom4R', 'autoslider.core', 'bigGP', 'BiplotGUI', 'blatr', 'BNSP', 'BRugs', 'choosepc', 'clrng', 'consrq', 'dataone', 'datapack', 'dcortools', 'dcorVS', 'DiscreteFWER', 'doMPI', 'excel.link', 'filters', 'gpuR', 'greta.censored', 'KeyboardSimulator', 'KSgeneral', 'lgpr', 'LLIC', 'mcrPioda', 'MDSGUI', 'MediaNews', 'metajam', 'minired', 'moc.gapbk', 'mregions2', 'nesRdata', 'NGCHM', 'OmopViewer', 'ondisc', 'OpenCL', 'pcaL1', 'PolisheR', 'R2PPT', 'R2wd', 'Racmacs', 'ravetools', 'Rblpapi', 'Rcplex', 'RcppCWB', 'rdflib', 'redatamx', 'redland', 'rFUSION', 'RInno', 'rmarchingcubes', 'Rmpi', 'ROI.plugin.cplex', 'ROI.plugin.qpoases', 'ROI.plugin.symphony', 'ROracle', 'RQuantLib', 'rsofun', 'Rsymphony', 'RWinEdt', 'spectrino', 'surveyvoi', 'taskscheduleR', 'tiledb', 'VICatMix'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'redhat-9'))" ### Manual pkg builds # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178 # RInno: Windows-only diff --git a/.woodpecker/build-redhat-9-arm64.yaml b/.woodpecker/build-redhat-9-arm64.yaml index 52a5d6c..cb7a8a9 100644 --- a/.woodpecker/build-redhat-9-arm64.yaml +++ b/.woodpecker/build-redhat-9-arm64.yaml @@ -63,7 +63,7 @@ steps: - R -q -e 'packageVersion("bincraftR")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd' - - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL, repos = structure(c(CRAN = 'https://cran.devxy.io/arm64/rhel9/latest'))); pkgs = c('paws.common', 'paws.storage', 'rlang', 'bit', 'bit64', 'RSQLite', 'vctrs'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'redhat-9'))" + - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs = c('aIc', 'antaresProcessing', 'atom4R', 'autoslider.core', 'bigGP', 'BiplotGUI', 'blatr', 'BNSP', 'BRugs', 'clrng', 'dataone', 'datapack', 'DiscreteFWER', 'doMPI', 'excel.link', 'filters', 'gpuR', 'greta.censored', 'KeyboardSimulator', 'lgpr', 'LLIC', 'MDSGUI', 'MediaNews', 'metajam', 'minired', 'moc.gapbk', 'mregions2', 'nesRdata', 'NGCHM', 'OmopViewer', 'OpenCL', 'pcaL1', 'PolisheR', 'R2PPT', 'R2wd', 'Racmacs', 'ravetools', 'Rcplex', 'RcppCWB', 'rdflib', 'redatamx', 'redland', 'rFUSION', 'Rmpi', 'ROI.plugin.cplex', 'ROI.plugin.symphony', 'ROracle', 'RQuantLib', 'rsofun', 'Rsymphony', 'RWinEdt', 'spectrino', 'surveyvoi', 'taskscheduleR', 'VICatMix'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'redhat-9'))" ### Manual pkg builds # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178 # RInno: Windows-only diff --git a/.woodpecker/build-ubuntu-2204-amd64.yaml b/.woodpecker/build-ubuntu-2204-amd64.yaml index 5bdc95a..3ed6854 100644 --- a/.woodpecker/build-ubuntu-2204-amd64.yaml +++ b/.woodpecker/build-ubuntu-2204-amd64.yaml @@ -39,7 +39,7 @@ steps: - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")' - R -q -e 'packageVersion("bincraftR")' # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd' - - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL))); pkgs = c('BiplotGUI', 'KeyboardSimulator', 'MDSGUI', 'R2PPT', 'R2wd', 'RWinEdt', 'Rveg', 'blatr', 'excel.link', 'leidenbase', 'mpathr', 'spectrino', 'taskscheduleR'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'CoTiMA', 'later', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'ubuntu-2204'))" + - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs = c('autoslider.core', 'BiplotGUI', 'blatr', 'BRugs', 'choosepc', 'clrng', 'consrq', 'CoTiMA', 'dcortools', 'dcorVS', 'DiscreteFWER', 'doMPI', 'excel.link', 'filters', 'gpuR', 'greta.censored', 'imbalanceDatRel', 'KeyboardSimulator', 'lgpr', 'LLIC', 'mcrPioda', 'MDSGUI', 'MediaNews', 'PolisheR', 'R2PPT', 'R2wd', 'Racmacs', 'ravetools', 'Rcplex', 'RcppCWB', 'rFUSION', 'ROI.plugin.cplex', 'ROracle', 'RWinEdt', 'spectrino', 'strata', 'taskscheduleR'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'CoTiMA', 'later', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'ubuntu-2204'))" ### Manual pkg builds # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178 # RInno: Windows-only diff --git a/.woodpecker/build-ubuntu-2204-arm64.yaml b/.woodpecker/build-ubuntu-2204-arm64.yaml index 71f17d6..aa95517 100644 --- a/.woodpecker/build-ubuntu-2204-arm64.yaml +++ b/.woodpecker/build-ubuntu-2204-arm64.yaml @@ -63,7 +63,7 @@ steps: - R -q -e 'packageVersion("bincraftR")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd' - - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL, repos = structure(c(CRAN = 'https://cran.devxy.io/arm64/jammy/latest'))); pkgs = c('rlang', 'bit', 'bit64', 'RSQLite', 'vctrs'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'ubuntu-2204'))" + - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs = c('autoslider.core', 'BiplotGUI', 'blatr', 'BRugs', 'clrng', 'DiscreteFWER', 'doMPI', 'excel.link', 'filters', 'gpuR', 'greta.censored', 'imbalanceDatRel', 'KeyboardSimulator', 'lgpr', 'LLIC', 'MDSGUI', 'MediaNews', 'PolisheR', 'R2PPT', 'R2wd', 'ravetools', 'Rcplex', 'RcppCWB', 'redatamx', 'rFUSION', 'rmarchingcubes', 'Rmpi', 'ROI.plugin.cplex', 'ROI.plugin.qpoases', 'ROracle', 'RWinEdt', 'spectrino', 'strata', 'survival.svb', 'SurvivalClusteringTree', 'survivalmodels', 'survivalREC', 'survivalROC', 'survPresmooth', 'survSNP', 'survstan', 'svd', 'svglite', 'svines', 'swatches', 'swdpwr', 'sweater', 'swephR', 'SymTS', 'taskscheduleR', 'testarguments'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'ubuntu-2204'))" ### Manual pkg builds # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178 # RInno: Windows-only diff --git a/.woodpecker/build-ubuntu-2404-amd64.yaml b/.woodpecker/build-ubuntu-2404-amd64.yaml index 72438a4..615246f 100644 --- a/.woodpecker/build-ubuntu-2404-amd64.yaml +++ b/.woodpecker/build-ubuntu-2404-amd64.yaml @@ -39,7 +39,7 @@ steps: - R -q -e 'packageVersion("bincraftR")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd' - - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL, repos = structure(c(CRAN = 'https://cran.devxy.io/amd64/noble/latest'))); pkgs = c('future'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'CoTiMA', 'later', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'ubuntu-2404'))" + - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs = c('abmR', 'aIc', 'antaresProcessing', 'autoslider.core', 'BiplotGUI', 'blatr', 'BNSP', 'BRugs', 'choosepc', 'clrng', 'consrq', 'CoTiMA', 'dcortools', 'dcorVS', 'DiscreteFWER', 'excel.link', 'filters', 'gpuR', 'greta.censored', 'KeyboardSimulator', 'KSgeneral', 'lgpr', 'LLIC', 'mcrPioda', 'MDSGUI', 'MediaNews', 'minired', 'OmopViewer', 'PolisheR', 'PytrendsLongitudinalR', 'R2PPT', 'R2wd', 'Racmacs', 'ravetools', 'Rblpapi', 'Rcplex', 'RcppCWB', 'redatamx', 'rFUSION', 'rmarchingcubes', 'ROI.plugin.cplex', 'ROI.plugin.qpoases', 'ROracle', 'rsofun', 'RWinEdt', 'spectrino', 'taskscheduleR', 'tiledb', 'VICatMix'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'CoTiMA', 'later', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'ubuntu-2404'))" ### Manual pkg builds # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178 # RInno: Windows-only diff --git a/.woodpecker/build-ubuntu-2404-arm64.yaml b/.woodpecker/build-ubuntu-2404-arm64.yaml index 4a32f86..8c9ccee 100644 --- a/.woodpecker/build-ubuntu-2404-arm64.yaml +++ b/.woodpecker/build-ubuntu-2404-arm64.yaml @@ -63,7 +63,7 @@ steps: - R -q -e 'packageVersion("bincraftR")' - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd' - - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL, repos = structure(c(devxy = 'https://cran.devxy.io/arm64/noble/latest', CRAN = 'https://cloud.r-project.org'))); library(dplyr); library(bincraftR); cran_pkgs = tools::CRAN_package_db()[['Package']]; '%nin%' <- Negate('%in%'); foo = query_metadata_table() |> filter(platform == 'ubuntu-2404', arch == 'arm64') |> distinct(name) |> pull(name); pkgs <- dput(cran_pkgs[cran_pkgs %nin% foo][0:300]); options(progressr.enable = TRUE); pkgs = c('BoundaryStats', 'Colossus', 'compositeReliabilityInNestedDesigns', 'conversim', 'coxphm', 'dartR', 'dartR.base', 'dartR.captive', 'dartR.popgen', 'dartR.sexlinked', 'diathor', 'DIFshiny', 'leidenbase', 'MediaNews', 'MonoPhy', 'oaqc', 'Rcatch22', 'RInno', 'rmarchingcubes', 'RmecabKo', 'ROI.plugin.cplex', 'ROI.plugin.qpoases', 'ROracle', 'RSP', 'scDIFtest', 'shiny.benchmark', 'shinyIRT', 'shinytest2', 'SIAmodules', 'simCAT', 'SimNPH', 'theft', 'theftdlc', 'trtswitch', 'ursa'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'ubuntu-2404'))" + - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs = c('abmR', 'aIc', 'antaresProcessing', 'autoslider.core', 'BiplotGUI', 'blatr', 'BNSP', 'BRugs', 'clrng', 'DiscreteFWER', 'excel.link', 'filters', 'GeoThinneR', 'gpuR', 'greta.censored', 'KeyboardSimulator', 'lgpr', 'LLIC', 'MDSGUI', 'MediaNews', 'OmopViewer', 'PolisheR', 'PytrendsLongitudinalR', 'R2PPT', 'R2wd', 'Racmacs', 'ravetools', 'Rcplex', 'RcppCWB', 'rFUSION', 'ROI.plugin.cplex', 'ROracle', 'rsofun', 'RWinEdt', 'spectrino', 'taskscheduleR', 'VICatMix' ); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'ubuntu-2404'))" ### Manual pkg builds # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178 # RInno: Windows-only