refactor(ci): consolidate build-all-versions workflows into 2 files (#93)
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## Summary
Consolidate the four `build-all-versions*` files into two, mirroring the matrix approach used for the process-updates / weekly families:
| Before | After |
|---|---|
| `build-all-versions-amd64.yaml` + `build-all-versions-arm64.yaml` | `build-all-versions.yaml` |
| `build-all-versions-install-deps-amd64.yaml` + `-arm64.yaml` | `build-all-versions-install-deps.yaml` |
`ARCH` becomes a matrix axis carrying the per-arch differences: `agent` (artemis/gaia), `BACKEND` (kubernetes/docker), and `R_PKG_CACHE_DIR`. Build-all keeps its `SPLIT_INDEX` parallelism, so its matrix is ARCH x SPLIT = 8 rows; only the rows matching the selected arch run.
**Invocation unchanged.** Routing uses the existing task selector `task == "build-all-${ARCH}"`, so `--var task=build-all-amd64 ...` still runs exactly the amd64 rows. `OS` / `OS_VERSION` / `R_VERSION` / `K8S_INSTANCE_TYPE` are still passed via `--var`. (You can drop `--var ARCH=...` now — arch comes from the matrix/task.)
**No cron.** These pipelines are manual-only, so there are no scheduled runs to affect.
## Validation before merge
Same matrix-interpolation-in-`when`/`labels` mechanism validated for #92, plus it now relies on per-row `agent`/`BACKEND` selecting the right execution backend (kubernetes for amd64, docker for arm64). Before merge, on this branch trigger a small `task=build-all-arm64` run and confirm it lands on the gaia/docker backend (and amd64 on artemis/kubernetes). Originals are in git history for rollback.
Note: `archive-missed-packages.yaml` was already a single consolidated matrix file (cron + manual) and is left untouched.
Reviewed-on: #93
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163
.crow/build-all-versions.yaml
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163
.crow/build-all-versions.yaml
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### Manual full rebuild of all CRAN binaries for one OS/arch.
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# Set the variables below in the manual-run form (or via --var on the CLI).
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# `target_arch` routes the matrix; OS/OS_VERSION/R_VERSION select the platform
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# image and cache volume. Placement is via the agent label (artemis/gaia).
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# Skip list lives in local/excluded-packages.json (read by local/build-all.R).
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variables:
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target_arch:
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description: "Architecture to build."
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options:
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- amd64
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- arm64
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default: amd64
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OS:
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description: "Base OS image name (e.g. alpine, redhat, ubuntu)."
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default: alpine
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OS_VERSION:
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description: "OS version / image tag (e.g. 3.24, 9, jammy, noble)."
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default: "3.24"
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R_VERSION:
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description: "Primary R version under /opt/R."
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options:
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- 4.5.3
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- 4.4.3
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default: 4.5.3
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when:
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- event: manual
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evaluate: 'target_arch == "${ARCH}"'
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skip_clone: true
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labels:
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platform: linux/${ARCH}
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agent: ${AGENT}
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matrix:
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include:
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- ARCH: amd64
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AGENT: artemis
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R_PKG_CACHE_DIR: ''
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SPLIT_INTO: 4
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SPLIT_INDEX: 1
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- ARCH: amd64
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AGENT: artemis
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R_PKG_CACHE_DIR: ''
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SPLIT_INTO: 4
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SPLIT_INDEX: 2
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- ARCH: amd64
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AGENT: artemis
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R_PKG_CACHE_DIR: ''
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SPLIT_INTO: 4
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SPLIT_INDEX: 3
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- ARCH: amd64
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AGENT: artemis
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R_PKG_CACHE_DIR: ''
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SPLIT_INTO: 4
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SPLIT_INDEX: 4
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- ARCH: arm64
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AGENT: gaia
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R_PKG_CACHE_DIR: /mnt/cache/pkgcache
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SPLIT_INTO: 4
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SPLIT_INDEX: 1
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- ARCH: arm64
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AGENT: gaia
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R_PKG_CACHE_DIR: /mnt/cache/pkgcache
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SPLIT_INTO: 4
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SPLIT_INDEX: 2
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- ARCH: arm64
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AGENT: gaia
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R_PKG_CACHE_DIR: /mnt/cache/pkgcache
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SPLIT_INTO: 4
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SPLIT_INDEX: 3
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- ARCH: arm64
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AGENT: gaia
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R_PKG_CACHE_DIR: /mnt/cache/pkgcache
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SPLIT_INTO: 4
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SPLIT_INDEX: 4
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depends_on:
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- build-all-versions-install-deps
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steps:
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- name: 'Build binaries'
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image: 'reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}'
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pull: true
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environment:
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RED_HAT_DEV_PW:
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from_secret: RED_HAT_DEV_PW
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B2_S3_ACCESS_KEY:
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from_secret: B2_S3_ACCESS_KEY
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B2_S3_SECRET_KEY:
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from_secret: B2_S3_SECRET_KEY
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PGPASS:
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from_secret: PGPASS
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REPO_RO_TOKEN:
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from_secret: REPO_RO_TOKEN
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GITHUB_PAT:
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from_secret: GITHUB_PAT
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# normal env vars
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GIT_USER: pat-s
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# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
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R_PKG_CACHE_DIR: ${R_PKG_CACHE_DIR}
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R_LIBS_USER: /mnt/cache/R-pkgs
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CCACHE_DIR: /mnt/cache/ccache
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NCPUS: 2
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volumes:
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- ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
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commands:
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- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
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- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
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- XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi
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- $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- /opt/R/$R_VERSION/bin/Rscript local/build-all.R $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1
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- |
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PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2)
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for RBIN in /opt/R/[0-9]*/bin/R; do
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RV=$(basename "$(dirname "$(dirname "$RBIN")")")
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RMINOR=$(echo "$RV" | cut -d. -f1-2)
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[ "$RMINOR" = "$PRIMARY_MINOR" ] && continue
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echo "=== R-minor-sensitive pass under R $RV ==="
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LIB="/mnt/cache/R-pkgs-$RMINOR"
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mkdir -p "$LIB"
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R_LIBS_USER="$LIB" "$(dirname "$RBIN")/R" -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")' || true
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R_LIBS_USER="$LIB" $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- "$(dirname "$RBIN")/Rscript" local/build-all.R --sensitive-only $SPLIT_INTO $SPLIT_INDEX $NCPUS 2>&1 || true
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done
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# archive missed packages
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- /opt/R/$R_VERSION/bin/R -q -e "bincraft::process_unarchived_pkgs(paste(Sys.getenv('OS'), Sys.getenv('OS_VERSION')), Sys.getenv('ARCH'), workers = $NCPUS)"
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backend_options:
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docker:
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resources:
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requests:
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memory: 5Gi
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cpu: 1000m
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limits:
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memory: 20Gi
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cpu: 2000m
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- name: 'Upload package indexes'
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image: 'reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}'
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pull: true
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environment:
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B2_S3_ACCESS_KEY:
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from_secret: B2_S3_ACCESS_KEY
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B2_S3_SECRET_KEY:
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from_secret: B2_S3_SECRET_KEY
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R_LIBS_USER: /mnt/cache/R-pkgs
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volumes:
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- ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
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commands:
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- |
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CODENAME=$(/opt/R/$R_VERSION/bin/Rscript -e "cat(bincraft::set_codename(NULL))")
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/opt/R/$R_VERSION/bin/R -q -e "bincraft::upload_package_index(codename = '$CODENAME', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))"
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for RBIN in /opt/R/[0-9]*/bin/R; do
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RMINOR=$(basename "$(dirname "$(dirname "$RBIN")")" | cut -d. -f1-2)
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/opt/R/$R_VERSION/bin/R -q -e "bincraft::upload_package_index(codename = '$CODENAME', r_minor = '$RMINOR', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))" || true
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done
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backend_options:
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docker:
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resources:
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requests:
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memory: 5Gi
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cpu: 1000m
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limits:
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memory: 20Gi
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cpu: 2000m
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