refactor(ci): consolidate per-platform crow workflows into 3 matrix files (#92)
## Summary Collapse **44** per-platform crow pipeline files into **3** matrix-driven files (one per family), using `matrix.include` + the crow #1165 declarative manual `variables:` block: | Family | Before | After | |---|---|---| | process-updates | 14 | `process-updates.yaml` | | weekly-audit-missing | 16 | `weekly-audit-missing.yaml` | | weekly-rebuild-missing | 14 | `weekly-rebuild-missing.yaml` | - **One file per family** (not split by arch). Arch placement is via the agent label as a matrix var (`artemis`=amd64, `gaia`=arm64) for process-updates and weekly-rebuild; weekly-audit keeps its arch-`nodeSelector` placement (no agent label). - **Matrix axis is named `OS`** (e.g. `redhat-9`) per request, with per-row `R_VERSION`, image tag, codename, and `process_new` (FALSE for alpine). - **Runs preserved 1:1:** - *Cron*: each existing `<family>-<os>-<arch>` cron still fires only its matching matrix row via `CI_PIPELINE_CRON`. Server-side cron entries unchanged. - *Manual*: a #1165 dropdown variable (`process_cran_updates` / `weekly_audit_missing` / `weekly_rebuild_missing`) selects a single `<os>-<arch>` or `all`. weekly-rebuild defaults to `all`, matching its former bare `event: manual` trigger. ## Behavior deltas (intentional, flagged) To fit one file per family the backend was unified: - The amd64-only `node.kubernetes.io/instance-type: AX42` nodeSelector pin is **dropped**; placement now relies on the `artemis`/`gaia` agents. - **process-updates arm64** jobs now share the same `backend_options` as amd64 (resource requests/limits + tolerations) — they previously had none, so they gain an 18Gi memory limit. Tell me if arm64 should stay uncapped. ## Validation required before merge Relies on crow interpolating matrix variables inside `when.evaluate`, `labels.agent`, and `commands`. Interpolation in image/env/commands is standard crow; the novel bit is `when.evaluate`. The manual dropdown routing exercises the same interpolation as the cron routing, so on this branch: 1. Trigger manually with the dropdown = `redhat-9-amd64` -> confirm only that one job runs (image `build-env-redhat:9`, R 4.4.3, agent artemis). 2. Trigger with `all` -> confirm all os/arch jobs schedule. Crons only fire on the default branch, so no collision while unmerged. Fallback if `${...}` doesn't interpolate in `when`: a runtime `case "$CI_PIPELINE_CRON" in ...` guard, same files otherwise. Reviewed-on: #92
This commit is contained in:
Patrick Schratz
parent
1cd86b65e1
commit
4406a8735b
46 changed files with 498 additions and 3056 deletions
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@ -1,108 +0,0 @@
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when:
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- event: [cron]
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cron: process-cran-updates-alpine-322-amd64
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- event: manual
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evaluate: 'process_cran_updates == "all"'
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- event: manual
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evaluate: 'process_cran_updates == "alpine-322-amd64"'
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skip_clone: true
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labels:
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agent: artemis
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steps:
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- name: 'Processing Updates'
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image: reg.devxy.io/rpkgs/build-env-alpine:3.24
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pull: true
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environment:
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RED_HAT_DEV_PW:
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from_secret: RED_HAT_DEV_PW
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B2_S3_ACCESS_KEY:
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from_secret: B2_S3_ACCESS_KEY
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B2_S3_SECRET_KEY:
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from_secret: B2_S3_SECRET_KEY
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PGPASS:
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from_secret: PGPASS
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REPO_RO_TOKEN:
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from_secret: REPO_RO_TOKEN
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GITHUB_PAT:
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from_secret: GITHUB_PAT
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# normal env vars
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GIT_USER: pat-s
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NTFY_SERVER:
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from_secret: NTFY_SERVER
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NTFY_TOPIC:
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from_secret: NTFY_TOPIC
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NTFY_AUTH: TRUE
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NTFY_PASSWORD:
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from_secret: ntfy_token
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# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
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R_PKG_CACHE_DIR: /mnt/cache/pkgcache
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R_LIBS_USER: /mnt/cache/R-pkgs
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R_VERSION: 4.5.3
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CCACHE_DIR: /mnt/cache/ccache
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PLATFORM: alpine-322
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ARCH: amd64
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NCPUS: 2
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STRATEGY: sequential
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INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
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# volumes:
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# - amd64-binaries-r-dep-cache-alpine-322:/mnt/cache
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commands:
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- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
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- rm -rf /mnt/cache/R-pkgs/00LOCK-* /mnt/cache/R-pkgs/bincraft /mnt/cache/R-pkgs/pkgcache /mnt/cache/pkgcache/R/pkgcache
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- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")'
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- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
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- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
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# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
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- xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-322', process_updated = TRUE, process_new = FALSE, process_removed = TRUE, r_minor_detection = 'classifier', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
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- |
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PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2)
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for RBIN in /opt/R/[0-9]*/bin/R; do
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RV=$(basename "$(dirname "$(dirname "$RBIN")")")
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RMINOR=$(echo "$RV" | cut -d. -f1-2)
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[ "$RMINOR" = "$PRIMARY_MINOR" ] && continue
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echo "=== R-minor-sensitive update pass under R $RV ==="
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LIB="/mnt/cache/R-pkgs-$RMINOR"
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mkdir -p "$LIB"
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R_LIBS_USER="$LIB" "$(dirname "$RBIN")/R" -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")' || true
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R_LIBS_USER="$LIB" xvfb-run "$(dirname "$RBIN")/R" -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-322', process_updated = TRUE, process_new = FALSE, process_removed = FALSE, r_minor_detection = 'classifier', r_minor_sensitive_only = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" || true
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done
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- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "alpine322", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
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- |
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for RBIN in /opt/R/[0-9]*/bin/R; do
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RMINOR=$(basename "$(dirname "$(dirname "$RBIN")")" | cut -d. -f1-2)
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/opt/R/$R_VERSION/bin/R -q -e "library(bincraft); upload_package_index(codename = 'alpine322', r_minor = '$RMINOR', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))" || true
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done
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backend_options:
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kubernetes:
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resources:
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requests:
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memory: 5Gi
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cpu: 3000m
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limits:
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memory: 18Gi
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cpu: 3000m
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nodeSelector:
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kubernetes.io/arch: amd64
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node.kubernetes.io/instance-type: AX42
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tolerations:
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- key: 'CI'
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operator: 'Equal'
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value: 'true'
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effect: 'NoSchedule'
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- name: Purge CDN cache
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image: reg.devxy.io/docker.io/library/alpine:3.24
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environment:
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BUNNYNET_API_KEY:
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from_secret: BUNNYNET_API_KEY
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SUBDOMAIN1: 'cran.devxy.io'
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SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
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SUBDOMAIN3: 'cran.rpkgs.com'
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OS_ID: alpine322
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ARCH: amd64
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commands:
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- apk add --no-cache -q bash curl
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- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
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@ -1,90 +0,0 @@
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when:
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- event: [cron]
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cron: process-cran-updates-alpine-322-arm64
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- event: manual
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evaluate: 'process_cran_updates == "all"'
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- event: manual
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evaluate: 'process_cran_updates == "alpine-322-arm64"'
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skip_clone: true
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labels:
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agent: gaia
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steps:
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- name: 'Processing Updates'
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image: reg.devxy.io/rpkgs/build-env-alpine:3.24
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pull: true
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environment:
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RED_HAT_DEV_PW:
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from_secret: RED_HAT_DEV_PW
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B2_S3_ACCESS_KEY:
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from_secret: B2_S3_ACCESS_KEY
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B2_S3_SECRET_KEY:
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from_secret: B2_S3_SECRET_KEY
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PGPASS:
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from_secret: PGPASS
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REPO_RO_TOKEN:
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from_secret: REPO_RO_TOKEN
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GITHUB_PAT:
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from_secret: GITHUB_PAT
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# normal env vars
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GIT_USER: pat-s
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NTFY_SERVER:
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from_secret: NTFY_SERVER
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NTFY_TOPIC:
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from_secret: NTFY_TOPIC
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NTFY_AUTH: TRUE
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NTFY_PASSWORD:
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from_secret: ntfy_token
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# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
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R_PKG_CACHE_DIR: /mnt/cache/pkgcache
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R_LIBS_USER: /mnt/cache/R-pkgs
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R_VERSION: 4.5.3
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CCACHE_DIR: /mnt/cache/ccache
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PLATFORM: alpine-322
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ARCH: arm64
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NCPUS: 2
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INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
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# volumes:
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# - arm64-binaries-r-dep-cache-alpine-321:/mnt/cache
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commands:
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- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
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- rm -rf /mnt/cache/R-pkgs/00LOCK-* /mnt/cache/R-pkgs/bincraft /mnt/cache/R-pkgs/pkgcache /mnt/cache/pkgcache/R/pkgcache
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- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")'
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- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
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- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
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# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
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- xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-322', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, r_minor_detection = 'classifier', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
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- |
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PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2)
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for RBIN in /opt/R/[0-9]*/bin/R; do
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RV=$(basename "$(dirname "$(dirname "$RBIN")")")
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RMINOR=$(echo "$RV" | cut -d. -f1-2)
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[ "$RMINOR" = "$PRIMARY_MINOR" ] && continue
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echo "=== R-minor-sensitive update pass under R $RV ==="
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LIB="/mnt/cache/R-pkgs-$RMINOR"
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mkdir -p "$LIB"
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R_LIBS_USER="$LIB" "$(dirname "$RBIN")/R" -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")' || true
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R_LIBS_USER="$LIB" xvfb-run "$(dirname "$RBIN")/R" -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-322', process_updated = TRUE, process_new = FALSE, process_removed = FALSE, r_minor_detection = 'classifier', r_minor_sensitive_only = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" || true
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done
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- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "alpine322", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
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- |
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for RBIN in /opt/R/[0-9]*/bin/R; do
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RMINOR=$(basename "$(dirname "$(dirname "$RBIN")")" | cut -d. -f1-2)
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/opt/R/$R_VERSION/bin/R -q -e "library(bincraft); upload_package_index(codename = 'alpine322', r_minor = '$RMINOR', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))" || true
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done
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- name: Purge CDN cache
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image: reg.devxy.io/docker.io/library/alpine:3.24
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environment:
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BUNNYNET_API_KEY:
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from_secret: BUNNYNET_API_KEY
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SUBDOMAIN1: 'cran.devxy.io'
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SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
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SUBDOMAIN3: 'cran.rpkgs.com'
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OS_ID: alpine322
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ARCH: arm64
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commands:
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- apk add --no-cache -q bash curl
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- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
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@ -1,108 +0,0 @@
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when:
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- event: [cron]
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cron: process-cran-updates-alpine-323-amd64
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- event: manual
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evaluate: 'process_cran_updates == "all"'
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- event: manual
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evaluate: 'process_cran_updates == "alpine-323-amd64"'
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skip_clone: true
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labels:
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agent: artemis
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steps:
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- name: 'Processing Updates'
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image: reg.devxy.io/rpkgs/build-env-alpine:3.24
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pull: true
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environment:
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RED_HAT_DEV_PW:
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from_secret: RED_HAT_DEV_PW
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B2_S3_ACCESS_KEY:
|
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from_secret: B2_S3_ACCESS_KEY
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B2_S3_SECRET_KEY:
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from_secret: B2_S3_SECRET_KEY
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PGPASS:
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from_secret: PGPASS
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REPO_RO_TOKEN:
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from_secret: REPO_RO_TOKEN
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GITHUB_PAT:
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from_secret: GITHUB_PAT
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# normal env vars
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GIT_USER: pat-s
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NTFY_SERVER:
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from_secret: NTFY_SERVER
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NTFY_TOPIC:
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from_secret: NTFY_TOPIC
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NTFY_AUTH: TRUE
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NTFY_PASSWORD:
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from_secret: ntfy_token
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# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
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R_PKG_CACHE_DIR: /mnt/cache/pkgcache
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R_LIBS_USER: /mnt/cache/R-pkgs
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R_VERSION: 4.5.3
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CCACHE_DIR: /mnt/cache/ccache
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PLATFORM: alpine-323
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ARCH: amd64
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NCPUS: 2
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STRATEGY: sequential
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INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
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# volumes:
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# - amd64-binaries-r-dep-cache-alpine-323:/mnt/cache
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commands:
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- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
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- rm -rf /mnt/cache/R-pkgs/00LOCK-* /mnt/cache/R-pkgs/bincraft /mnt/cache/R-pkgs/pkgcache /mnt/cache/pkgcache/R/pkgcache
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")'
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
|
||||
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
|
||||
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
|
||||
- xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-323', process_updated = TRUE, process_new = FALSE, process_removed = TRUE, r_minor_detection = 'classifier', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
|
||||
- |
|
||||
PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2)
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RV=$(basename "$(dirname "$(dirname "$RBIN")")")
|
||||
RMINOR=$(echo "$RV" | cut -d. -f1-2)
|
||||
[ "$RMINOR" = "$PRIMARY_MINOR" ] && continue
|
||||
echo "=== R-minor-sensitive update pass under R $RV ==="
|
||||
LIB="/mnt/cache/R-pkgs-$RMINOR"
|
||||
mkdir -p "$LIB"
|
||||
R_LIBS_USER="$LIB" "$(dirname "$RBIN")/R" -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")' || true
|
||||
R_LIBS_USER="$LIB" xvfb-run "$(dirname "$RBIN")/R" -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-323', process_updated = TRUE, process_new = FALSE, process_removed = FALSE, r_minor_detection = 'classifier', r_minor_sensitive_only = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" || true
|
||||
done
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "alpine323", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
|
||||
- |
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RMINOR=$(basename "$(dirname "$(dirname "$RBIN")")" | cut -d. -f1-2)
|
||||
/opt/R/$R_VERSION/bin/R -q -e "library(bincraft); upload_package_index(codename = 'alpine323', r_minor = '$RMINOR', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))" || true
|
||||
done
|
||||
backend_options:
|
||||
kubernetes:
|
||||
resources:
|
||||
requests:
|
||||
memory: 5Gi
|
||||
cpu: 3000m
|
||||
limits:
|
||||
memory: 18Gi
|
||||
cpu: 3000m
|
||||
nodeSelector:
|
||||
kubernetes.io/arch: amd64
|
||||
node.kubernetes.io/instance-type: AX42
|
||||
tolerations:
|
||||
- key: 'CI'
|
||||
operator: 'Equal'
|
||||
value: 'true'
|
||||
effect: 'NoSchedule'
|
||||
|
||||
- name: Purge CDN cache
|
||||
image: reg.devxy.io/docker.io/library/alpine:3.24
|
||||
environment:
|
||||
BUNNYNET_API_KEY:
|
||||
from_secret: BUNNYNET_API_KEY
|
||||
SUBDOMAIN1: 'cran.devxy.io'
|
||||
SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
|
||||
SUBDOMAIN3: 'cran.rpkgs.com'
|
||||
OS_ID: alpine323
|
||||
ARCH: amd64
|
||||
commands:
|
||||
- apk add --no-cache -q bash curl
|
||||
- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
|
||||
|
|
@ -1,90 +0,0 @@
|
|||
when:
|
||||
- event: [cron]
|
||||
cron: process-cran-updates-alpine-323-arm64
|
||||
- event: manual
|
||||
evaluate: 'process_cran_updates == "all"'
|
||||
- event: manual
|
||||
evaluate: 'process_cran_updates == "alpine-323-arm64"'
|
||||
|
||||
skip_clone: true
|
||||
|
||||
labels:
|
||||
agent: gaia
|
||||
|
||||
steps:
|
||||
- name: 'Processing Updates'
|
||||
image: reg.devxy.io/rpkgs/build-env-alpine:3.24
|
||||
pull: true
|
||||
environment:
|
||||
RED_HAT_DEV_PW:
|
||||
from_secret: RED_HAT_DEV_PW
|
||||
B2_S3_ACCESS_KEY:
|
||||
from_secret: B2_S3_ACCESS_KEY
|
||||
B2_S3_SECRET_KEY:
|
||||
from_secret: B2_S3_SECRET_KEY
|
||||
PGPASS:
|
||||
from_secret: PGPASS
|
||||
REPO_RO_TOKEN:
|
||||
from_secret: REPO_RO_TOKEN
|
||||
GITHUB_PAT:
|
||||
from_secret: GITHUB_PAT
|
||||
# normal env vars
|
||||
GIT_USER: pat-s
|
||||
NTFY_SERVER:
|
||||
from_secret: NTFY_SERVER
|
||||
NTFY_TOPIC:
|
||||
from_secret: NTFY_TOPIC
|
||||
NTFY_AUTH: TRUE
|
||||
NTFY_PASSWORD:
|
||||
from_secret: ntfy_token
|
||||
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
|
||||
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
|
||||
R_LIBS_USER: /mnt/cache/R-pkgs
|
||||
R_VERSION: 4.5.3
|
||||
CCACHE_DIR: /mnt/cache/ccache
|
||||
PLATFORM: alpine-323
|
||||
ARCH: arm64
|
||||
NCPUS: 2
|
||||
INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
|
||||
# volumes:
|
||||
# - arm64-binaries-r-dep-cache-alpine-321:/mnt/cache
|
||||
commands:
|
||||
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
|
||||
- rm -rf /mnt/cache/R-pkgs/00LOCK-* /mnt/cache/R-pkgs/bincraft /mnt/cache/R-pkgs/pkgcache /mnt/cache/pkgcache/R/pkgcache
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")'
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
|
||||
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
|
||||
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
|
||||
- xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-323', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, r_minor_detection = 'classifier', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
|
||||
- |
|
||||
PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2)
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RV=$(basename "$(dirname "$(dirname "$RBIN")")")
|
||||
RMINOR=$(echo "$RV" | cut -d. -f1-2)
|
||||
[ "$RMINOR" = "$PRIMARY_MINOR" ] && continue
|
||||
echo "=== R-minor-sensitive update pass under R $RV ==="
|
||||
LIB="/mnt/cache/R-pkgs-$RMINOR"
|
||||
mkdir -p "$LIB"
|
||||
R_LIBS_USER="$LIB" "$(dirname "$RBIN")/R" -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")' || true
|
||||
R_LIBS_USER="$LIB" xvfb-run "$(dirname "$RBIN")/R" -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'alpine-323', process_updated = TRUE, process_new = FALSE, process_removed = FALSE, r_minor_detection = 'classifier', r_minor_sensitive_only = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" || true
|
||||
done
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "alpine323", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
|
||||
- |
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RMINOR=$(basename "$(dirname "$(dirname "$RBIN")")" | cut -d. -f1-2)
|
||||
/opt/R/$R_VERSION/bin/R -q -e "library(bincraft); upload_package_index(codename = 'alpine323', r_minor = '$RMINOR', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))" || true
|
||||
done
|
||||
|
||||
- name: Purge CDN cache
|
||||
image: reg.devxy.io/docker.io/library/alpine:3.24
|
||||
environment:
|
||||
BUNNYNET_API_KEY:
|
||||
from_secret: BUNNYNET_API_KEY
|
||||
SUBDOMAIN1: 'cran.devxy.io'
|
||||
SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
|
||||
SUBDOMAIN3: 'cran.rpkgs.com'
|
||||
OS_ID: alpine323
|
||||
ARCH: arm64
|
||||
commands:
|
||||
- apk add --no-cache -q bash curl
|
||||
- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
|
||||
|
|
@ -1,110 +0,0 @@
|
|||
when:
|
||||
- event: [cron]
|
||||
cron: process-cran-updates-redhat-10-amd64
|
||||
- event: manual
|
||||
evaluate: 'process_cran_updates == "all"'
|
||||
- event: manual
|
||||
evaluate: 'process_cran_updates == "redhat-10-amd64"'
|
||||
|
||||
skip_clone: true
|
||||
|
||||
labels:
|
||||
agent: artemis
|
||||
|
||||
steps:
|
||||
- name: 'Processing Updates'
|
||||
image: reg.devxy.io/rpkgs/build-env-redhat:10
|
||||
pull: true
|
||||
environment:
|
||||
RED_HAT_DEV_PW:
|
||||
from_secret: RED_HAT_DEV_PW
|
||||
B2_S3_ACCESS_KEY:
|
||||
from_secret: B2_S3_ACCESS_KEY
|
||||
B2_S3_SECRET_KEY:
|
||||
from_secret: B2_S3_SECRET_KEY
|
||||
PGPASS:
|
||||
from_secret: PGPASS
|
||||
REPO_RO_TOKEN:
|
||||
from_secret: REPO_RO_TOKEN
|
||||
GITHUB_PAT:
|
||||
from_secret: GITHUB_PAT
|
||||
# normal env vars
|
||||
GIT_USER: pat-s
|
||||
NTFY_SERVER:
|
||||
from_secret: NTFY_SERVER
|
||||
NTFY_TOPIC:
|
||||
from_secret: NTFY_TOPIC
|
||||
NTFY_AUTH: TRUE
|
||||
NTFY_PASSWORD:
|
||||
from_secret: ntfy_token
|
||||
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
|
||||
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
|
||||
R_LIBS_USER: /mnt/cache/R-pkgs
|
||||
R_VERSION: 4.5.3
|
||||
CCACHE_DIR: /mnt/cache/ccache
|
||||
PLATFORM: redhat-10
|
||||
ARCH: amd64
|
||||
NCPUS: 2
|
||||
MEMORY: 18Gi
|
||||
STRATEGY: sequential
|
||||
INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
|
||||
# volumes:
|
||||
# - amd64-binaries-r-dep-cache-redhat-10:/mnt/cache
|
||||
commands:
|
||||
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
|
||||
- rm -rf /mnt/cache/R-pkgs/00LOCK-* /mnt/cache/R-pkgs/bincraft /mnt/cache/R-pkgs/pkgcache /mnt/cache/pkgcache/R/pkgcache
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")'
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
|
||||
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
|
||||
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
|
||||
- XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi
|
||||
- $XVFB $XVFB_ARGS -- /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-10', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, r_minor_detection = 'classifier', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
|
||||
- |
|
||||
PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2)
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RV=$(basename "$(dirname "$(dirname "$RBIN")")")
|
||||
RMINOR=$(echo "$RV" | cut -d. -f1-2)
|
||||
[ "$RMINOR" = "$PRIMARY_MINOR" ] && continue
|
||||
echo "=== R-minor-sensitive update pass under R $RV ==="
|
||||
LIB="/mnt/cache/R-pkgs-$RMINOR"
|
||||
mkdir -p "$LIB"
|
||||
R_LIBS_USER="$LIB" "$(dirname "$RBIN")/R" -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")' || true
|
||||
R_LIBS_USER="$LIB" xvfb-run "$(dirname "$RBIN")/R" -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-10', process_updated = TRUE, process_new = FALSE, process_removed = FALSE, r_minor_detection = 'classifier', r_minor_sensitive_only = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" || true
|
||||
done
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "rhel10", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
|
||||
- |
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RMINOR=$(basename "$(dirname "$(dirname "$RBIN")")" | cut -d. -f1-2)
|
||||
/opt/R/$R_VERSION/bin/R -q -e "library(bincraft); upload_package_index(codename = 'rhel10', r_minor = '$RMINOR', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))" || true
|
||||
done
|
||||
backend_options:
|
||||
kubernetes:
|
||||
resources:
|
||||
requests:
|
||||
memory: 5Gi
|
||||
cpu: 3000m
|
||||
limits:
|
||||
memory: 18Gi
|
||||
cpu: 3000m
|
||||
nodeSelector:
|
||||
kubernetes.io/arch: amd64
|
||||
node.kubernetes.io/instance-type: AX42
|
||||
tolerations:
|
||||
- key: 'CI'
|
||||
operator: 'Equal'
|
||||
value: 'true'
|
||||
effect: 'NoSchedule'
|
||||
|
||||
- name: Purge CDN cache
|
||||
image: reg.devxy.io/docker.io/library/alpine:3.24
|
||||
environment:
|
||||
BUNNYNET_API_KEY:
|
||||
from_secret: BUNNYNET_API_KEY
|
||||
SUBDOMAIN1: 'cran.devxy.io'
|
||||
SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
|
||||
SUBDOMAIN3: 'cran.rpkgs.com'
|
||||
OS_ID: rhel10
|
||||
ARCH: amd64
|
||||
commands:
|
||||
- apk add --no-cache -q bash curl
|
||||
- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
|
||||
|
|
@ -1,91 +0,0 @@
|
|||
when:
|
||||
- event: [cron]
|
||||
cron: process-cran-updates-redhat-10-arm64
|
||||
- event: manual
|
||||
evaluate: 'process_cran_updates == "all"'
|
||||
- event: manual
|
||||
evaluate: 'process_cran_updates == "redhat-10-arm64"'
|
||||
|
||||
skip_clone: true
|
||||
|
||||
labels:
|
||||
agent: gaia
|
||||
|
||||
steps:
|
||||
- name: 'Processing Updates'
|
||||
image: reg.devxy.io/rpkgs/build-env-redhat:10
|
||||
pull: true
|
||||
environment:
|
||||
RED_HAT_DEV_PW:
|
||||
from_secret: RED_HAT_DEV_PW
|
||||
B2_S3_ACCESS_KEY:
|
||||
from_secret: B2_S3_ACCESS_KEY
|
||||
B2_S3_SECRET_KEY:
|
||||
from_secret: B2_S3_SECRET_KEY
|
||||
PGPASS:
|
||||
from_secret: PGPASS
|
||||
REPO_RO_TOKEN:
|
||||
from_secret: REPO_RO_TOKEN
|
||||
GITHUB_PAT:
|
||||
from_secret: GITHUB_PAT
|
||||
# normal env vars
|
||||
GIT_USER: pat-s
|
||||
NTFY_SERVER:
|
||||
from_secret: NTFY_SERVER
|
||||
NTFY_TOPIC:
|
||||
from_secret: NTFY_TOPIC
|
||||
NTFY_AUTH: TRUE
|
||||
NTFY_PASSWORD:
|
||||
from_secret: ntfy_token
|
||||
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
|
||||
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
|
||||
R_LIBS_USER: /mnt/cache/R-pkgs
|
||||
R_VERSION: 4.5.3
|
||||
CCACHE_DIR: /mnt/cache/ccache
|
||||
PLATFORM: redhat-10
|
||||
ARCH: arm64
|
||||
NCPUS: 2
|
||||
INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
|
||||
# volumes:
|
||||
# - arm64-binaries-r-dep-cache-redhat-10:/mnt/cache
|
||||
commands:
|
||||
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
|
||||
- rm -rf /mnt/cache/R-pkgs/00LOCK-* /mnt/cache/R-pkgs/bincraft /mnt/cache/R-pkgs/pkgcache /mnt/cache/pkgcache/R/pkgcache
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")'
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
|
||||
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
|
||||
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
|
||||
- XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi
|
||||
- $XVFB $XVFB_ARGS -- /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-10', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, r_minor_detection = 'classifier', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
|
||||
- |
|
||||
PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2)
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RV=$(basename "$(dirname "$(dirname "$RBIN")")")
|
||||
RMINOR=$(echo "$RV" | cut -d. -f1-2)
|
||||
[ "$RMINOR" = "$PRIMARY_MINOR" ] && continue
|
||||
echo "=== R-minor-sensitive update pass under R $RV ==="
|
||||
LIB="/mnt/cache/R-pkgs-$RMINOR"
|
||||
mkdir -p "$LIB"
|
||||
R_LIBS_USER="$LIB" "$(dirname "$RBIN")/R" -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")' || true
|
||||
R_LIBS_USER="$LIB" xvfb-run "$(dirname "$RBIN")/R" -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-10', process_updated = TRUE, process_new = FALSE, process_removed = FALSE, r_minor_detection = 'classifier', r_minor_sensitive_only = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" || true
|
||||
done
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "rhel10", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
|
||||
- |
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RMINOR=$(basename "$(dirname "$(dirname "$RBIN")")" | cut -d. -f1-2)
|
||||
/opt/R/$R_VERSION/bin/R -q -e "library(bincraft); upload_package_index(codename = 'rhel10', r_minor = '$RMINOR', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))" || true
|
||||
done
|
||||
|
||||
- name: Purge CDN cache
|
||||
image: reg.devxy.io/docker.io/library/alpine:3.24
|
||||
environment:
|
||||
BUNNYNET_API_KEY:
|
||||
from_secret: BUNNYNET_API_KEY
|
||||
SUBDOMAIN1: 'cran.devxy.io'
|
||||
SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
|
||||
SUBDOMAIN3: 'cran.rpkgs.com'
|
||||
OS_ID: rhel10
|
||||
ARCH: arm64
|
||||
commands:
|
||||
- apk add --no-cache -q bash curl
|
||||
- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
|
||||
|
|
@ -1,108 +0,0 @@
|
|||
when:
|
||||
- event: [cron]
|
||||
cron: process-cran-updates-redhat-8-amd64
|
||||
- event: manual
|
||||
evaluate: 'process_cran_updates == "all"'
|
||||
- event: manual
|
||||
evaluate: 'process_cran_updates == "redhat-8-amd64"'
|
||||
|
||||
skip_clone: true
|
||||
|
||||
labels:
|
||||
agent: artemis
|
||||
|
||||
steps:
|
||||
- name: 'Processing Updates'
|
||||
image: reg.devxy.io/rpkgs/build-env-redhat:8
|
||||
pull: true
|
||||
environment:
|
||||
RED_HAT_DEV_PW:
|
||||
from_secret: RED_HAT_DEV_PW
|
||||
B2_S3_ACCESS_KEY:
|
||||
from_secret: B2_S3_ACCESS_KEY
|
||||
B2_S3_SECRET_KEY:
|
||||
from_secret: B2_S3_SECRET_KEY
|
||||
PGPASS:
|
||||
from_secret: PGPASS
|
||||
REPO_RO_TOKEN:
|
||||
from_secret: REPO_RO_TOKEN
|
||||
GITHUB_PAT:
|
||||
from_secret: GITHUB_PAT
|
||||
# normal env vars
|
||||
GIT_USER: pat-s
|
||||
NTFY_SERVER:
|
||||
from_secret: NTFY_SERVER
|
||||
NTFY_TOPIC:
|
||||
from_secret: NTFY_TOPIC
|
||||
NTFY_AUTH: TRUE
|
||||
NTFY_PASSWORD:
|
||||
from_secret: ntfy_token
|
||||
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
|
||||
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
|
||||
R_LIBS_USER: /mnt/cache/R-pkgs
|
||||
R_VERSION: 4.4.3
|
||||
CCACHE_DIR: /mnt/cache/ccache
|
||||
PLATFORM: redhat-8
|
||||
ARCH: amd64
|
||||
NCPUS: 2
|
||||
STRATEGY: sequential
|
||||
INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
|
||||
# volumes:
|
||||
# - amd64-binaries-r-dep-cache-redhat-8:/mnt/cache
|
||||
commands:
|
||||
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
|
||||
- rm -rf /mnt/cache/R-pkgs/00LOCK-* /mnt/cache/R-pkgs/bincraft /mnt/cache/R-pkgs/pkgcache /mnt/cache/pkgcache/R/pkgcache
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")'
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
|
||||
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
|
||||
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
|
||||
- xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-8', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, r_minor_detection = 'classifier', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
|
||||
- |
|
||||
PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2)
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RV=$(basename "$(dirname "$(dirname "$RBIN")")")
|
||||
RMINOR=$(echo "$RV" | cut -d. -f1-2)
|
||||
[ "$RMINOR" = "$PRIMARY_MINOR" ] && continue
|
||||
echo "=== R-minor-sensitive update pass under R $RV ==="
|
||||
LIB="/mnt/cache/R-pkgs-$RMINOR"
|
||||
mkdir -p "$LIB"
|
||||
R_LIBS_USER="$LIB" "$(dirname "$RBIN")/R" -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")' || true
|
||||
R_LIBS_USER="$LIB" xvfb-run "$(dirname "$RBIN")/R" -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-8', process_updated = TRUE, process_new = FALSE, process_removed = FALSE, r_minor_detection = 'classifier', r_minor_sensitive_only = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" || true
|
||||
done
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "rhel8", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
|
||||
- |
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RMINOR=$(basename "$(dirname "$(dirname "$RBIN")")" | cut -d. -f1-2)
|
||||
/opt/R/$R_VERSION/bin/R -q -e "library(bincraft); upload_package_index(codename = 'rhel8', r_minor = '$RMINOR', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))" || true
|
||||
done
|
||||
backend_options:
|
||||
kubernetes:
|
||||
resources:
|
||||
requests:
|
||||
memory: 5Gi
|
||||
cpu: 3000m
|
||||
limits:
|
||||
memory: 18Gi
|
||||
cpu: 3000m
|
||||
nodeSelector:
|
||||
kubernetes.io/arch: amd64
|
||||
node.kubernetes.io/instance-type: AX42
|
||||
tolerations:
|
||||
- key: 'CI'
|
||||
operator: 'Equal'
|
||||
value: 'true'
|
||||
effect: 'NoSchedule'
|
||||
|
||||
- name: Purge CDN cache
|
||||
image: reg.devxy.io/docker.io/library/alpine:3.24
|
||||
environment:
|
||||
BUNNYNET_API_KEY:
|
||||
from_secret: BUNNYNET_API_KEY
|
||||
SUBDOMAIN1: 'cran.devxy.io'
|
||||
SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
|
||||
SUBDOMAIN3: 'cran.rpkgs.com'
|
||||
OS_ID: rhel8
|
||||
ARCH: amd64
|
||||
commands:
|
||||
- apk add --no-cache -q bash curl
|
||||
- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
|
||||
|
|
@ -1,90 +0,0 @@
|
|||
when:
|
||||
- event: [cron]
|
||||
cron: process-cran-updates-redhat-8-arm64
|
||||
- event: manual
|
||||
evaluate: 'process_cran_updates == "all"'
|
||||
- event: manual
|
||||
evaluate: 'process_cran_updates == "redhat-8-arm64"'
|
||||
|
||||
skip_clone: true
|
||||
|
||||
labels:
|
||||
agent: gaia
|
||||
|
||||
steps:
|
||||
- name: 'Processing Updates'
|
||||
image: reg.devxy.io/rpkgs/build-env-redhat:8
|
||||
pull: true
|
||||
environment:
|
||||
RED_HAT_DEV_PW:
|
||||
from_secret: RED_HAT_DEV_PW
|
||||
B2_S3_ACCESS_KEY:
|
||||
from_secret: B2_S3_ACCESS_KEY
|
||||
B2_S3_SECRET_KEY:
|
||||
from_secret: B2_S3_SECRET_KEY
|
||||
PGPASS:
|
||||
from_secret: PGPASS
|
||||
REPO_RO_TOKEN:
|
||||
from_secret: REPO_RO_TOKEN
|
||||
GITHUB_PAT:
|
||||
from_secret: GITHUB_PAT
|
||||
# normal env vars
|
||||
GIT_USER: pat-s
|
||||
NTFY_SERVER:
|
||||
from_secret: NTFY_SERVER
|
||||
NTFY_TOPIC:
|
||||
from_secret: NTFY_TOPIC
|
||||
NTFY_AUTH: TRUE
|
||||
NTFY_PASSWORD:
|
||||
from_secret: ntfy_token
|
||||
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
|
||||
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
|
||||
R_LIBS_USER: /mnt/cache/R-pkgs
|
||||
R_VERSION: 4.4.3
|
||||
CCACHE_DIR: /mnt/cache/ccache
|
||||
PLATFORM: redhat-8
|
||||
ARCH: arm64
|
||||
NCPUS: 2
|
||||
INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
|
||||
# volumes:
|
||||
# - arm64-binaries-r-dep-cache-redhat-8:/mnt/cache
|
||||
commands:
|
||||
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
|
||||
- rm -rf /mnt/cache/R-pkgs/00LOCK-* /mnt/cache/R-pkgs/bincraft /mnt/cache/R-pkgs/pkgcache /mnt/cache/pkgcache/R/pkgcache
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")'
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
|
||||
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
|
||||
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
|
||||
- xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-8', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, r_minor_detection = 'classifier', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
|
||||
- |
|
||||
PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2)
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RV=$(basename "$(dirname "$(dirname "$RBIN")")")
|
||||
RMINOR=$(echo "$RV" | cut -d. -f1-2)
|
||||
[ "$RMINOR" = "$PRIMARY_MINOR" ] && continue
|
||||
echo "=== R-minor-sensitive update pass under R $RV ==="
|
||||
LIB="/mnt/cache/R-pkgs-$RMINOR"
|
||||
mkdir -p "$LIB"
|
||||
R_LIBS_USER="$LIB" "$(dirname "$RBIN")/R" -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")' || true
|
||||
R_LIBS_USER="$LIB" xvfb-run "$(dirname "$RBIN")/R" -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-8', process_updated = TRUE, process_new = FALSE, process_removed = FALSE, r_minor_detection = 'classifier', r_minor_sensitive_only = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" || true
|
||||
done
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "rhel8", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
|
||||
- |
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RMINOR=$(basename "$(dirname "$(dirname "$RBIN")")" | cut -d. -f1-2)
|
||||
/opt/R/$R_VERSION/bin/R -q -e "library(bincraft); upload_package_index(codename = 'rhel8', r_minor = '$RMINOR', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))" || true
|
||||
done
|
||||
|
||||
- name: Purge CDN cache
|
||||
image: reg.devxy.io/docker.io/library/alpine:3.24
|
||||
environment:
|
||||
BUNNYNET_API_KEY:
|
||||
from_secret: BUNNYNET_API_KEY
|
||||
SUBDOMAIN1: 'cran.devxy.io'
|
||||
SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
|
||||
SUBDOMAIN3: 'cran.rpkgs.com'
|
||||
OS_ID: rhel8
|
||||
ARCH: arm64
|
||||
commands:
|
||||
- apk add --no-cache -q bash curl
|
||||
- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
|
||||
|
|
@ -1,109 +0,0 @@
|
|||
when:
|
||||
- event: [cron]
|
||||
cron: process-cran-updates-redhat-9-amd64
|
||||
- event: manual
|
||||
evaluate: 'process_cran_updates == "all"'
|
||||
- event: manual
|
||||
evaluate: 'process_cran_updates == "redhat-9-amd64"'
|
||||
|
||||
skip_clone: true
|
||||
|
||||
labels:
|
||||
agent: artemis
|
||||
|
||||
steps:
|
||||
- name: 'Processing Updates'
|
||||
image: reg.devxy.io/rpkgs/build-env-redhat:9
|
||||
pull: true
|
||||
environment:
|
||||
RED_HAT_DEV_PW:
|
||||
from_secret: RED_HAT_DEV_PW
|
||||
B2_S3_ACCESS_KEY:
|
||||
from_secret: B2_S3_ACCESS_KEY
|
||||
B2_S3_SECRET_KEY:
|
||||
from_secret: B2_S3_SECRET_KEY
|
||||
PGPASS:
|
||||
from_secret: PGPASS
|
||||
REPO_RO_TOKEN:
|
||||
from_secret: REPO_RO_TOKEN
|
||||
GITHUB_PAT:
|
||||
from_secret: GITHUB_PAT
|
||||
# normal env vars
|
||||
GIT_USER: pat-s
|
||||
NTFY_SERVER:
|
||||
from_secret: NTFY_SERVER
|
||||
NTFY_TOPIC:
|
||||
from_secret: NTFY_TOPIC
|
||||
NTFY_AUTH: TRUE
|
||||
NTFY_PASSWORD:
|
||||
from_secret: ntfy_token
|
||||
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
|
||||
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
|
||||
R_LIBS_USER: /mnt/cache/R-pkgs
|
||||
R_VERSION: 4.4.3
|
||||
CCACHE_DIR: /mnt/cache/ccache
|
||||
PLATFORM: redhat-9
|
||||
ARCH: amd64
|
||||
NCPUS: 2
|
||||
MEMORY: 18Gi
|
||||
STRATEGY: sequential
|
||||
INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
|
||||
# volumes:
|
||||
# - amd64-binaries-r-dep-cache-redhat-9:/mnt/cache
|
||||
commands:
|
||||
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
|
||||
- rm -rf /mnt/cache/R-pkgs/00LOCK-* /mnt/cache/R-pkgs/bincraft /mnt/cache/R-pkgs/pkgcache /mnt/cache/pkgcache/R/pkgcache
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")'
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
|
||||
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
|
||||
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
|
||||
- xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-9', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, r_minor_detection = 'classifier', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
|
||||
- |
|
||||
PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2)
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RV=$(basename "$(dirname "$(dirname "$RBIN")")")
|
||||
RMINOR=$(echo "$RV" | cut -d. -f1-2)
|
||||
[ "$RMINOR" = "$PRIMARY_MINOR" ] && continue
|
||||
echo "=== R-minor-sensitive update pass under R $RV ==="
|
||||
LIB="/mnt/cache/R-pkgs-$RMINOR"
|
||||
mkdir -p "$LIB"
|
||||
R_LIBS_USER="$LIB" "$(dirname "$RBIN")/R" -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")' || true
|
||||
R_LIBS_USER="$LIB" xvfb-run "$(dirname "$RBIN")/R" -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-9', process_updated = TRUE, process_new = FALSE, process_removed = FALSE, r_minor_detection = 'classifier', r_minor_sensitive_only = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" || true
|
||||
done
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "rhel9", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
|
||||
- |
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RMINOR=$(basename "$(dirname "$(dirname "$RBIN")")" | cut -d. -f1-2)
|
||||
/opt/R/$R_VERSION/bin/R -q -e "library(bincraft); upload_package_index(codename = 'rhel9', r_minor = '$RMINOR', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))" || true
|
||||
done
|
||||
backend_options:
|
||||
kubernetes:
|
||||
resources:
|
||||
requests:
|
||||
memory: 5Gi
|
||||
cpu: 3000m
|
||||
limits:
|
||||
memory: 18Gi
|
||||
cpu: 3000m
|
||||
nodeSelector:
|
||||
kubernetes.io/arch: amd64
|
||||
node.kubernetes.io/instance-type: AX42
|
||||
tolerations:
|
||||
- key: 'CI'
|
||||
operator: 'Equal'
|
||||
value: 'true'
|
||||
effect: 'NoSchedule'
|
||||
|
||||
- name: Purge CDN cache
|
||||
image: reg.devxy.io/docker.io/library/alpine:3.24
|
||||
environment:
|
||||
BUNNYNET_API_KEY:
|
||||
from_secret: BUNNYNET_API_KEY
|
||||
SUBDOMAIN1: 'cran.devxy.io'
|
||||
SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
|
||||
SUBDOMAIN3: 'cran.rpkgs.com'
|
||||
OS_ID: rhel9
|
||||
ARCH: amd64
|
||||
commands:
|
||||
- apk add --no-cache -q bash curl
|
||||
- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
|
||||
|
|
@ -1,90 +0,0 @@
|
|||
when:
|
||||
- event: [cron]
|
||||
cron: process-cran-updates-redhat-9-arm64
|
||||
- event: manual
|
||||
evaluate: 'process_cran_updates == "all"'
|
||||
- event: manual
|
||||
evaluate: 'process_cran_updates == "redhat-9-arm64"'
|
||||
|
||||
skip_clone: true
|
||||
|
||||
labels:
|
||||
agent: gaia
|
||||
|
||||
steps:
|
||||
- name: 'Processing Updates'
|
||||
image: reg.devxy.io/rpkgs/build-env-redhat:9
|
||||
pull: true
|
||||
environment:
|
||||
RED_HAT_DEV_PW:
|
||||
from_secret: RED_HAT_DEV_PW
|
||||
B2_S3_ACCESS_KEY:
|
||||
from_secret: B2_S3_ACCESS_KEY
|
||||
B2_S3_SECRET_KEY:
|
||||
from_secret: B2_S3_SECRET_KEY
|
||||
PGPASS:
|
||||
from_secret: PGPASS
|
||||
REPO_RO_TOKEN:
|
||||
from_secret: REPO_RO_TOKEN
|
||||
GITHUB_PAT:
|
||||
from_secret: GITHUB_PAT
|
||||
# normal env vars
|
||||
GIT_USER: pat-s
|
||||
NTFY_SERVER:
|
||||
from_secret: NTFY_SERVER
|
||||
NTFY_TOPIC:
|
||||
from_secret: NTFY_TOPIC
|
||||
NTFY_AUTH: TRUE
|
||||
NTFY_PASSWORD:
|
||||
from_secret: ntfy_token
|
||||
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
|
||||
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
|
||||
R_LIBS_USER: /mnt/cache/R-pkgs
|
||||
R_VERSION: 4.4.3
|
||||
CCACHE_DIR: /mnt/cache/ccache
|
||||
PLATFORM: redhat-9
|
||||
ARCH: arm64
|
||||
NCPUS: 2
|
||||
INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
|
||||
# volumes:
|
||||
# - arm64-binaries-r-dep-cache-redhat-9:/mnt/cache
|
||||
commands:
|
||||
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
|
||||
- rm -rf /mnt/cache/R-pkgs/00LOCK-* /mnt/cache/R-pkgs/bincraft /mnt/cache/R-pkgs/pkgcache /mnt/cache/pkgcache/R/pkgcache
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")'
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
|
||||
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
|
||||
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
|
||||
- xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-9', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, r_minor_detection = 'classifier', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
|
||||
- |
|
||||
PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2)
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RV=$(basename "$(dirname "$(dirname "$RBIN")")")
|
||||
RMINOR=$(echo "$RV" | cut -d. -f1-2)
|
||||
[ "$RMINOR" = "$PRIMARY_MINOR" ] && continue
|
||||
echo "=== R-minor-sensitive update pass under R $RV ==="
|
||||
LIB="/mnt/cache/R-pkgs-$RMINOR"
|
||||
mkdir -p "$LIB"
|
||||
R_LIBS_USER="$LIB" "$(dirname "$RBIN")/R" -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")' || true
|
||||
R_LIBS_USER="$LIB" xvfb-run "$(dirname "$RBIN")/R" -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'redhat-9', process_updated = TRUE, process_new = FALSE, process_removed = FALSE, r_minor_detection = 'classifier', r_minor_sensitive_only = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" || true
|
||||
done
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "rhel9", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
|
||||
- |
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RMINOR=$(basename "$(dirname "$(dirname "$RBIN")")" | cut -d. -f1-2)
|
||||
/opt/R/$R_VERSION/bin/R -q -e "library(bincraft); upload_package_index(codename = 'rhel9', r_minor = '$RMINOR', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))" || true
|
||||
done
|
||||
|
||||
- name: Purge CDN cache
|
||||
image: reg.devxy.io/docker.io/library/alpine:3.24
|
||||
environment:
|
||||
BUNNYNET_API_KEY:
|
||||
from_secret: BUNNYNET_API_KEY
|
||||
SUBDOMAIN1: 'cran.devxy.io'
|
||||
SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
|
||||
SUBDOMAIN3: 'cran.rpkgs.com'
|
||||
OS_ID: rhel9
|
||||
ARCH: arm64
|
||||
commands:
|
||||
- apk add --no-cache -q bash curl
|
||||
- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
|
||||
|
|
@ -1,109 +0,0 @@
|
|||
when:
|
||||
- event: [cron]
|
||||
cron: process-cran-updates-ubuntu-2204-amd64
|
||||
- event: manual
|
||||
evaluate: 'process_cran_updates == "all"'
|
||||
- event: manual
|
||||
evaluate: 'process_cran_updates == "ubuntu-2204-amd64"'
|
||||
|
||||
skip_clone: true
|
||||
|
||||
labels:
|
||||
agent: artemis
|
||||
|
||||
steps:
|
||||
- name: 'Processing Updates'
|
||||
image: reg.devxy.io/rpkgs/build-env-ubuntu:jammy
|
||||
pull: true
|
||||
environment:
|
||||
RED_HAT_DEV_PW:
|
||||
from_secret: RED_HAT_DEV_PW
|
||||
B2_S3_ACCESS_KEY:
|
||||
from_secret: B2_S3_ACCESS_KEY
|
||||
B2_S3_SECRET_KEY:
|
||||
from_secret: B2_S3_SECRET_KEY
|
||||
PGPASS:
|
||||
from_secret: PGPASS
|
||||
REPO_RO_TOKEN:
|
||||
from_secret: REPO_RO_TOKEN
|
||||
GITHUB_PAT:
|
||||
from_secret: GITHUB_PAT
|
||||
# normal env vars
|
||||
GIT_USER: pat-s
|
||||
NTFY_SERVER:
|
||||
from_secret: NTFY_SERVER
|
||||
NTFY_TOPIC:
|
||||
from_secret: NTFY_TOPIC
|
||||
NTFY_AUTH: TRUE
|
||||
NTFY_PASSWORD:
|
||||
from_secret: ntfy_token
|
||||
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
|
||||
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
|
||||
R_LIBS_USER: /mnt/cache/R-pkgs
|
||||
R_VERSION: 4.4.3
|
||||
CCACHE_DIR: /mnt/cache/ccache
|
||||
PLATFORM: ubuntu-2204
|
||||
ARCH: amd64
|
||||
NCPUS: 2
|
||||
MEMORY: 18Gi
|
||||
STRATEGY: sequential
|
||||
INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
|
||||
# volumes:
|
||||
# - amd64-binaries-r-dep-cache-ubuntu-2204:/mnt/cache
|
||||
commands:
|
||||
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
|
||||
- rm -rf /mnt/cache/R-pkgs/00LOCK-* /mnt/cache/R-pkgs/bincraft /mnt/cache/R-pkgs/pkgcache /mnt/cache/pkgcache/R/pkgcache
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")'
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
|
||||
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
|
||||
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
|
||||
- xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2204', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, r_minor_detection = 'classifier', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
|
||||
- |
|
||||
PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2)
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RV=$(basename "$(dirname "$(dirname "$RBIN")")")
|
||||
RMINOR=$(echo "$RV" | cut -d. -f1-2)
|
||||
[ "$RMINOR" = "$PRIMARY_MINOR" ] && continue
|
||||
echo "=== R-minor-sensitive update pass under R $RV ==="
|
||||
LIB="/mnt/cache/R-pkgs-$RMINOR"
|
||||
mkdir -p "$LIB"
|
||||
R_LIBS_USER="$LIB" "$(dirname "$RBIN")/R" -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")' || true
|
||||
R_LIBS_USER="$LIB" xvfb-run "$(dirname "$RBIN")/R" -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2204', process_updated = TRUE, process_new = FALSE, process_removed = FALSE, r_minor_detection = 'classifier', r_minor_sensitive_only = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" || true
|
||||
done
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "jammy", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
|
||||
- |
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RMINOR=$(basename "$(dirname "$(dirname "$RBIN")")" | cut -d. -f1-2)
|
||||
/opt/R/$R_VERSION/bin/R -q -e "library(bincraft); upload_package_index(codename = 'jammy', r_minor = '$RMINOR', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))" || true
|
||||
done
|
||||
backend_options:
|
||||
kubernetes:
|
||||
resources:
|
||||
requests:
|
||||
memory: 5Gi
|
||||
cpu: 3000m
|
||||
limits:
|
||||
memory: 18Gi
|
||||
cpu: 3000m
|
||||
nodeSelector:
|
||||
kubernetes.io/arch: amd64
|
||||
node.kubernetes.io/instance-type: AX42
|
||||
tolerations:
|
||||
- key: 'CI'
|
||||
operator: 'Equal'
|
||||
value: 'true'
|
||||
effect: 'NoSchedule'
|
||||
|
||||
- name: Purge CDN cache
|
||||
image: reg.devxy.io/docker.io/library/alpine:3.24
|
||||
environment:
|
||||
BUNNYNET_API_KEY:
|
||||
from_secret: BUNNYNET_API_KEY
|
||||
SUBDOMAIN1: 'cran.devxy.io'
|
||||
SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
|
||||
SUBDOMAIN3: 'cran.rpkgs.com'
|
||||
OS_ID: jammy
|
||||
ARCH: amd64
|
||||
commands:
|
||||
- apk add --no-cache -q bash curl
|
||||
- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
|
||||
|
|
@ -1,90 +0,0 @@
|
|||
when:
|
||||
- event: [cron]
|
||||
cron: process-cran-updates-ubuntu-2204-arm64
|
||||
- event: manual
|
||||
evaluate: 'process_cran_updates == "all"'
|
||||
- event: manual
|
||||
evaluate: 'process_cran_updates == "ubuntu-2204-arm64"'
|
||||
|
||||
skip_clone: true
|
||||
|
||||
labels:
|
||||
agent: gaia
|
||||
|
||||
steps:
|
||||
- name: 'Processing Updates'
|
||||
image: reg.devxy.io/rpkgs/build-env-ubuntu:jammy
|
||||
pull: true
|
||||
environment:
|
||||
RED_HAT_DEV_PW:
|
||||
from_secret: RED_HAT_DEV_PW
|
||||
B2_S3_ACCESS_KEY:
|
||||
from_secret: B2_S3_ACCESS_KEY
|
||||
B2_S3_SECRET_KEY:
|
||||
from_secret: B2_S3_SECRET_KEY
|
||||
PGPASS:
|
||||
from_secret: PGPASS
|
||||
REPO_RO_TOKEN:
|
||||
from_secret: REPO_RO_TOKEN
|
||||
GITHUB_PAT:
|
||||
from_secret: GITHUB_PAT
|
||||
# normal env vars
|
||||
GIT_USER: pat-s
|
||||
NTFY_SERVER:
|
||||
from_secret: NTFY_SERVER
|
||||
NTFY_TOPIC:
|
||||
from_secret: NTFY_TOPIC
|
||||
NTFY_AUTH: TRUE
|
||||
NTFY_PASSWORD:
|
||||
from_secret: ntfy_token
|
||||
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
|
||||
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
|
||||
R_LIBS_USER: /mnt/cache/R-pkgs
|
||||
R_VERSION: 4.4.3
|
||||
CCACHE_DIR: /mnt/cache/ccache
|
||||
PLATFORM: ubuntu-2204
|
||||
ARCH: arm64
|
||||
NCPUS: 2
|
||||
INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
|
||||
# volumes:
|
||||
# - arm64-binaries-r-dep-cache-ubuntu-2204:/mnt/cache
|
||||
commands:
|
||||
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
|
||||
- rm -rf /mnt/cache/R-pkgs/00LOCK-* /mnt/cache/R-pkgs/bincraft /mnt/cache/R-pkgs/pkgcache /mnt/cache/pkgcache/R/pkgcache
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")'
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
|
||||
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
|
||||
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
|
||||
- xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2204', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, r_minor_detection = 'classifier', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
|
||||
- |
|
||||
PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2)
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RV=$(basename "$(dirname "$(dirname "$RBIN")")")
|
||||
RMINOR=$(echo "$RV" | cut -d. -f1-2)
|
||||
[ "$RMINOR" = "$PRIMARY_MINOR" ] && continue
|
||||
echo "=== R-minor-sensitive update pass under R $RV ==="
|
||||
LIB="/mnt/cache/R-pkgs-$RMINOR"
|
||||
mkdir -p "$LIB"
|
||||
R_LIBS_USER="$LIB" "$(dirname "$RBIN")/R" -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")' || true
|
||||
R_LIBS_USER="$LIB" xvfb-run "$(dirname "$RBIN")/R" -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2204', process_updated = TRUE, process_new = FALSE, process_removed = FALSE, r_minor_detection = 'classifier', r_minor_sensitive_only = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" || true
|
||||
done
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "jammy", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
|
||||
- |
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RMINOR=$(basename "$(dirname "$(dirname "$RBIN")")" | cut -d. -f1-2)
|
||||
/opt/R/$R_VERSION/bin/R -q -e "library(bincraft); upload_package_index(codename = 'jammy', r_minor = '$RMINOR', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))" || true
|
||||
done
|
||||
|
||||
- name: Purge CDN cache
|
||||
image: reg.devxy.io/docker.io/library/alpine:3.24
|
||||
environment:
|
||||
BUNNYNET_API_KEY:
|
||||
from_secret: BUNNYNET_API_KEY
|
||||
SUBDOMAIN1: 'cran.devxy.io'
|
||||
SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
|
||||
SUBDOMAIN3: 'cran.rpkgs.com'
|
||||
OS_ID: jammy
|
||||
ARCH: arm64
|
||||
commands:
|
||||
- apk add --no-cache -q bash curl
|
||||
- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
|
||||
|
|
@ -1,108 +0,0 @@
|
|||
when:
|
||||
- event: [cron]
|
||||
cron: process-cran-updates-ubuntu-2404-amd64
|
||||
- event: manual
|
||||
evaluate: 'process_cran_updates == "all"'
|
||||
- event: manual
|
||||
evaluate: 'process_cran_updates == "ubuntu-2404-amd64"'
|
||||
|
||||
skip_clone: true
|
||||
|
||||
labels:
|
||||
agent: artemis
|
||||
|
||||
steps:
|
||||
- name: 'Processing Updates'
|
||||
image: reg.devxy.io/rpkgs/build-env-ubuntu:noble
|
||||
pull: true
|
||||
environment:
|
||||
RED_HAT_DEV_PW:
|
||||
from_secret: RED_HAT_DEV_PW
|
||||
B2_S3_ACCESS_KEY:
|
||||
from_secret: B2_S3_ACCESS_KEY
|
||||
B2_S3_SECRET_KEY:
|
||||
from_secret: B2_S3_SECRET_KEY
|
||||
PGPASS:
|
||||
from_secret: PGPASS
|
||||
REPO_RO_TOKEN:
|
||||
from_secret: REPO_RO_TOKEN
|
||||
GITHUB_PAT:
|
||||
from_secret: GITHUB_PAT
|
||||
# normal env vars
|
||||
GIT_USER: pat-s
|
||||
NTFY_SERVER:
|
||||
from_secret: NTFY_SERVER
|
||||
NTFY_TOPIC:
|
||||
from_secret: NTFY_TOPIC
|
||||
NTFY_AUTH: TRUE
|
||||
NTFY_PASSWORD:
|
||||
from_secret: ntfy_token
|
||||
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
|
||||
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
|
||||
R_LIBS_USER: /mnt/cache/R-pkgs
|
||||
R_VERSION: 4.4.3
|
||||
CCACHE_DIR: /mnt/cache/ccache
|
||||
PLATFORM: ubuntu-2404
|
||||
ARCH: amd64
|
||||
NCPUS: 1
|
||||
STRATEGY: sequential
|
||||
INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
|
||||
# volumes:
|
||||
# - amd64-binaries-r-dep-cache-ubuntu-2404:/mnt/cache
|
||||
commands:
|
||||
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
|
||||
- rm -rf /mnt/cache/R-pkgs/00LOCK-* /mnt/cache/R-pkgs/bincraft /mnt/cache/R-pkgs/pkgcache /mnt/cache/pkgcache/R/pkgcache
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")'
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
|
||||
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
|
||||
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
|
||||
- xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2404', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, r_minor_detection = 'classifier', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
|
||||
- |
|
||||
PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2)
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RV=$(basename "$(dirname "$(dirname "$RBIN")")")
|
||||
RMINOR=$(echo "$RV" | cut -d. -f1-2)
|
||||
[ "$RMINOR" = "$PRIMARY_MINOR" ] && continue
|
||||
echo "=== R-minor-sensitive update pass under R $RV ==="
|
||||
LIB="/mnt/cache/R-pkgs-$RMINOR"
|
||||
mkdir -p "$LIB"
|
||||
R_LIBS_USER="$LIB" "$(dirname "$RBIN")/R" -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")' || true
|
||||
R_LIBS_USER="$LIB" xvfb-run "$(dirname "$RBIN")/R" -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2404', process_updated = TRUE, process_new = FALSE, process_removed = FALSE, r_minor_detection = 'classifier', r_minor_sensitive_only = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" || true
|
||||
done
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "noble", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
|
||||
- |
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RMINOR=$(basename "$(dirname "$(dirname "$RBIN")")" | cut -d. -f1-2)
|
||||
/opt/R/$R_VERSION/bin/R -q -e "library(bincraft); upload_package_index(codename = 'noble', r_minor = '$RMINOR', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))" || true
|
||||
done
|
||||
backend_options:
|
||||
kubernetes:
|
||||
resources:
|
||||
requests:
|
||||
memory: 5Gi
|
||||
cpu: 3000m
|
||||
limits:
|
||||
memory: 18Gi
|
||||
cpu: 3000m
|
||||
nodeSelector:
|
||||
kubernetes.io/arch: amd64
|
||||
node.kubernetes.io/instance-type: AX42
|
||||
tolerations:
|
||||
- key: 'CI'
|
||||
operator: 'Equal'
|
||||
value: 'true'
|
||||
effect: 'NoSchedule'
|
||||
|
||||
- name: Purge CDN cache
|
||||
image: reg.devxy.io/docker.io/library/alpine:3.24
|
||||
environment:
|
||||
BUNNYNET_API_KEY:
|
||||
from_secret: BUNNYNET_API_KEY
|
||||
SUBDOMAIN1: 'cran.devxy.io'
|
||||
SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
|
||||
SUBDOMAIN3: 'cran.rpkgs.com'
|
||||
OS_ID: noble
|
||||
ARCH: amd64
|
||||
commands:
|
||||
- apk add --no-cache -q bash curl
|
||||
- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
|
||||
|
|
@ -1,90 +0,0 @@
|
|||
when:
|
||||
- event: [cron]
|
||||
cron: process-cran-updates-ubuntu-2404-arm64
|
||||
- event: manual
|
||||
evaluate: 'process_cran_updates == "all"'
|
||||
- event: manual
|
||||
evaluate: 'process_cran_updates == "ubuntu-2404-arm64"'
|
||||
|
||||
skip_clone: true
|
||||
|
||||
labels:
|
||||
agent: gaia
|
||||
|
||||
steps:
|
||||
- name: 'Processing Updates'
|
||||
image: reg.devxy.io/rpkgs/build-env-ubuntu:noble
|
||||
pull: true
|
||||
environment:
|
||||
RED_HAT_DEV_PW:
|
||||
from_secret: RED_HAT_DEV_PW
|
||||
B2_S3_ACCESS_KEY:
|
||||
from_secret: B2_S3_ACCESS_KEY
|
||||
B2_S3_SECRET_KEY:
|
||||
from_secret: B2_S3_SECRET_KEY
|
||||
PGPASS:
|
||||
from_secret: PGPASS
|
||||
REPO_RO_TOKEN:
|
||||
from_secret: REPO_RO_TOKEN
|
||||
GITHUB_PAT:
|
||||
from_secret: GITHUB_PAT
|
||||
# normal env vars
|
||||
GIT_USER: pat-s
|
||||
NTFY_SERVER:
|
||||
from_secret: NTFY_SERVER
|
||||
NTFY_TOPIC:
|
||||
from_secret: NTFY_TOPIC
|
||||
NTFY_AUTH: TRUE
|
||||
NTFY_PASSWORD:
|
||||
from_secret: ntfy_token
|
||||
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
|
||||
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
|
||||
R_LIBS_USER: /mnt/cache/R-pkgs
|
||||
R_VERSION: 4.4.3
|
||||
CCACHE_DIR: /mnt/cache/ccache
|
||||
PLATFORM: ubuntu-2404
|
||||
ARCH: arm64
|
||||
NCPUS: 2
|
||||
INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
|
||||
# volumes:
|
||||
# - arm64-binaries-r-dep-cache-ubuntu-2404:/mnt/cache
|
||||
commands:
|
||||
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
|
||||
- rm -rf /mnt/cache/R-pkgs/00LOCK-* /mnt/cache/R-pkgs/bincraft /mnt/cache/R-pkgs/pkgcache /mnt/cache/pkgcache/R/pkgcache
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")'
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
|
||||
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
|
||||
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
|
||||
- xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2404', process_updated = TRUE, process_new = TRUE, process_removed = TRUE, r_minor_detection = 'classifier', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
|
||||
- |
|
||||
PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2)
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RV=$(basename "$(dirname "$(dirname "$RBIN")")")
|
||||
RMINOR=$(echo "$RV" | cut -d. -f1-2)
|
||||
[ "$RMINOR" = "$PRIMARY_MINOR" ] && continue
|
||||
echo "=== R-minor-sensitive update pass under R $RV ==="
|
||||
LIB="/mnt/cache/R-pkgs-$RMINOR"
|
||||
mkdir -p "$LIB"
|
||||
R_LIBS_USER="$LIB" "$(dirname "$RBIN")/R" -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")' || true
|
||||
R_LIBS_USER="$LIB" xvfb-run "$(dirname "$RBIN")/R" -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = 'ubuntu-2404', process_updated = TRUE, process_new = FALSE, process_removed = FALSE, r_minor_detection = 'classifier', r_minor_sensitive_only = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" || true
|
||||
done
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "noble", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
|
||||
- |
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RMINOR=$(basename "$(dirname "$(dirname "$RBIN")")" | cut -d. -f1-2)
|
||||
/opt/R/$R_VERSION/bin/R -q -e "library(bincraft); upload_package_index(codename = 'noble', r_minor = '$RMINOR', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))" || true
|
||||
done
|
||||
|
||||
- name: Purge CDN cache
|
||||
image: reg.devxy.io/docker.io/library/alpine:3.24
|
||||
environment:
|
||||
BUNNYNET_API_KEY:
|
||||
from_secret: BUNNYNET_API_KEY
|
||||
SUBDOMAIN1: 'cran.devxy.io'
|
||||
SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
|
||||
SUBDOMAIN3: 'cran.rpkgs.com'
|
||||
OS_ID: noble
|
||||
ARCH: arm64
|
||||
commands:
|
||||
- apk add --no-cache -q bash curl
|
||||
- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
|
||||
226
.crow/process-updates.yaml
Normal file
226
.crow/process-updates.yaml
Normal file
|
|
@ -0,0 +1,226 @@
|
|||
# Consolidated process-updates pipeline (all platforms, both arches).
|
||||
# One matrix row per OS/arch replaces the former per-platform files.
|
||||
# Routing is preserved 1:1:
|
||||
# - cron: each existing `process-cran-updates-<os>-<arch>` cron fires only
|
||||
# its matching matrix row (via CI_PIPELINE_CRON).
|
||||
# - manual: pick a target from the `process_cran_updates` dropdown
|
||||
# ("all" = every os/arch).
|
||||
# Arch placement is handled by the agent label (artemis=amd64, gaia=arm64).
|
||||
variables:
|
||||
process_cran_updates:
|
||||
description: "Manual run target: a specific <os>-<arch>, or 'all' for every os/arch."
|
||||
options:
|
||||
- all
|
||||
- alpine-322-amd64
|
||||
- alpine-322-arm64
|
||||
- alpine-323-amd64
|
||||
- alpine-323-arm64
|
||||
- redhat-8-amd64
|
||||
- redhat-8-arm64
|
||||
- redhat-9-amd64
|
||||
- redhat-9-arm64
|
||||
- redhat-10-amd64
|
||||
- redhat-10-arm64
|
||||
- ubuntu-2204-amd64
|
||||
- ubuntu-2204-arm64
|
||||
- ubuntu-2404-amd64
|
||||
- ubuntu-2404-arm64
|
||||
default: all
|
||||
|
||||
when:
|
||||
- event: cron
|
||||
evaluate: 'CI_PIPELINE_CRON == "process-cran-updates-${OS}-${ARCH}"'
|
||||
- event: manual
|
||||
evaluate: 'process_cran_updates == "all" || process_cran_updates == "${OS}-${ARCH}"'
|
||||
|
||||
skip_clone: true
|
||||
|
||||
labels:
|
||||
agent: ${AGENT}
|
||||
|
||||
matrix:
|
||||
include:
|
||||
- OS: alpine-322
|
||||
ARCH: amd64
|
||||
AGENT: artemis
|
||||
R_VERSION: 4.5.3
|
||||
IMG: alpine:3.24
|
||||
OS_ID: alpine322
|
||||
PROCESS_NEW: FALSE
|
||||
- OS: alpine-322
|
||||
ARCH: arm64
|
||||
AGENT: gaia
|
||||
R_VERSION: 4.5.3
|
||||
IMG: alpine:3.24
|
||||
OS_ID: alpine322
|
||||
PROCESS_NEW: FALSE
|
||||
- OS: alpine-323
|
||||
ARCH: amd64
|
||||
AGENT: artemis
|
||||
R_VERSION: 4.5.3
|
||||
IMG: alpine:3.24
|
||||
OS_ID: alpine323
|
||||
PROCESS_NEW: FALSE
|
||||
- OS: alpine-323
|
||||
ARCH: arm64
|
||||
AGENT: gaia
|
||||
R_VERSION: 4.5.3
|
||||
IMG: alpine:3.24
|
||||
OS_ID: alpine323
|
||||
PROCESS_NEW: FALSE
|
||||
- OS: redhat-8
|
||||
ARCH: amd64
|
||||
AGENT: artemis
|
||||
R_VERSION: 4.4.3
|
||||
IMG: redhat:8
|
||||
OS_ID: rhel8
|
||||
PROCESS_NEW: TRUE
|
||||
- OS: redhat-8
|
||||
ARCH: arm64
|
||||
AGENT: gaia
|
||||
R_VERSION: 4.4.3
|
||||
IMG: redhat:8
|
||||
OS_ID: rhel8
|
||||
PROCESS_NEW: TRUE
|
||||
- OS: redhat-9
|
||||
ARCH: amd64
|
||||
AGENT: artemis
|
||||
R_VERSION: 4.4.3
|
||||
IMG: redhat:9
|
||||
OS_ID: rhel9
|
||||
PROCESS_NEW: TRUE
|
||||
- OS: redhat-9
|
||||
ARCH: arm64
|
||||
AGENT: gaia
|
||||
R_VERSION: 4.4.3
|
||||
IMG: redhat:9
|
||||
OS_ID: rhel9
|
||||
PROCESS_NEW: TRUE
|
||||
- OS: redhat-10
|
||||
ARCH: amd64
|
||||
AGENT: artemis
|
||||
R_VERSION: 4.5.3
|
||||
IMG: redhat:10
|
||||
OS_ID: rhel10
|
||||
PROCESS_NEW: TRUE
|
||||
- OS: redhat-10
|
||||
ARCH: arm64
|
||||
AGENT: gaia
|
||||
R_VERSION: 4.5.3
|
||||
IMG: redhat:10
|
||||
OS_ID: rhel10
|
||||
PROCESS_NEW: TRUE
|
||||
- OS: ubuntu-2204
|
||||
ARCH: amd64
|
||||
AGENT: artemis
|
||||
R_VERSION: 4.4.3
|
||||
IMG: ubuntu:jammy
|
||||
OS_ID: jammy
|
||||
PROCESS_NEW: TRUE
|
||||
- OS: ubuntu-2204
|
||||
ARCH: arm64
|
||||
AGENT: gaia
|
||||
R_VERSION: 4.4.3
|
||||
IMG: ubuntu:jammy
|
||||
OS_ID: jammy
|
||||
PROCESS_NEW: TRUE
|
||||
- OS: ubuntu-2404
|
||||
ARCH: amd64
|
||||
AGENT: artemis
|
||||
R_VERSION: 4.4.3
|
||||
IMG: ubuntu:noble
|
||||
OS_ID: noble
|
||||
PROCESS_NEW: TRUE
|
||||
- OS: ubuntu-2404
|
||||
ARCH: arm64
|
||||
AGENT: gaia
|
||||
R_VERSION: 4.4.3
|
||||
IMG: ubuntu:noble
|
||||
OS_ID: noble
|
||||
PROCESS_NEW: TRUE
|
||||
|
||||
steps:
|
||||
- name: 'Processing Updates'
|
||||
image: reg.devxy.io/rpkgs/build-env-${IMG}
|
||||
pull: true
|
||||
environment:
|
||||
RED_HAT_DEV_PW:
|
||||
from_secret: RED_HAT_DEV_PW
|
||||
B2_S3_ACCESS_KEY:
|
||||
from_secret: B2_S3_ACCESS_KEY
|
||||
B2_S3_SECRET_KEY:
|
||||
from_secret: B2_S3_SECRET_KEY
|
||||
PGPASS:
|
||||
from_secret: PGPASS
|
||||
REPO_RO_TOKEN:
|
||||
from_secret: REPO_RO_TOKEN
|
||||
GITHUB_PAT:
|
||||
from_secret: GITHUB_PAT
|
||||
# normal env vars
|
||||
GIT_USER: pat-s
|
||||
NTFY_SERVER:
|
||||
from_secret: NTFY_SERVER
|
||||
NTFY_TOPIC:
|
||||
from_secret: NTFY_TOPIC
|
||||
NTFY_AUTH: TRUE
|
||||
NTFY_PASSWORD:
|
||||
from_secret: ntfy_token
|
||||
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
|
||||
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
|
||||
R_LIBS_USER: /mnt/cache/R-pkgs
|
||||
R_VERSION: ${R_VERSION}
|
||||
CCACHE_DIR: /mnt/cache/ccache
|
||||
PLATFORM: ${OS}
|
||||
OS_ID: ${OS_ID}
|
||||
ARCH: ${ARCH}
|
||||
NCPUS: 2
|
||||
INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
|
||||
commands:
|
||||
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
|
||||
- rm -rf /mnt/cache/R-pkgs/00LOCK-* /mnt/cache/R-pkgs/bincraft /mnt/cache/R-pkgs/pkgcache /mnt/cache/pkgcache/R/pkgcache
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")'
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
|
||||
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
|
||||
# options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
|
||||
- xvfb-run /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = '${OS}', process_updated = TRUE, process_new = ${PROCESS_NEW}, process_removed = TRUE, r_minor_detection = 'classifier', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
|
||||
- |
|
||||
PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2)
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RV=$(basename "$(dirname "$(dirname "$RBIN")")")
|
||||
RMINOR=$(echo "$RV" | cut -d. -f1-2)
|
||||
[ "$RMINOR" = "$PRIMARY_MINOR" ] && continue
|
||||
echo "=== R-minor-sensitive update pass under R $RV ==="
|
||||
LIB="/mnt/cache/R-pkgs-$RMINOR"
|
||||
mkdir -p "$LIB"
|
||||
R_LIBS_USER="$LIB" "$(dirname "$RBIN")/R" -q -e 'if (!requireNamespace("bincraft", quietly = TRUE) || packageVersion("bincraft") != "4.2.2") pak::pak("git::https://codefloe.com/rpkgs/bincraft.git@v4.2.2")' || true
|
||||
R_LIBS_USER="$LIB" xvfb-run "$(dirname "$RBIN")/R" -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = '${OS}', process_updated = TRUE, process_new = FALSE, process_removed = FALSE, r_minor_detection = 'classifier', r_minor_sensitive_only = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" || true
|
||||
done
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "${OS_ID}", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
|
||||
- |
|
||||
for RBIN in /opt/R/[0-9]*/bin/R; do
|
||||
RMINOR=$(basename "$(dirname "$(dirname "$RBIN")")" | cut -d. -f1-2)
|
||||
/opt/R/$R_VERSION/bin/R -q -e "library(bincraft); upload_package_index(codename = '${OS_ID}', r_minor = '$RMINOR', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))" || true
|
||||
done
|
||||
backend_options:
|
||||
docker:
|
||||
resources:
|
||||
requests:
|
||||
memory: 5Gi
|
||||
cpu: 3000m
|
||||
limits:
|
||||
memory: 18Gi
|
||||
cpu: 3000m
|
||||
|
||||
- name: Purge CDN cache
|
||||
image: reg.devxy.io/docker.io/library/alpine:3.24
|
||||
environment:
|
||||
BUNNYNET_API_KEY:
|
||||
from_secret: BUNNYNET_API_KEY
|
||||
SUBDOMAIN1: 'cran.devxy.io'
|
||||
SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
|
||||
SUBDOMAIN3: 'cran.rpkgs.com'
|
||||
OS_ID: ${OS_ID}
|
||||
ARCH: ${ARCH}
|
||||
commands:
|
||||
- apk add --no-cache -q bash curl
|
||||
- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
|
||||
|
|
@ -1,52 +0,0 @@
|
|||
when:
|
||||
- event: cron
|
||||
cron: weekly-audit-missing-alpine-321-amd64
|
||||
- event: manual
|
||||
evaluate: 'task == "weekly-audit-missing-alpine-321-amd64"'
|
||||
|
||||
skip_clone: true
|
||||
|
||||
steps:
|
||||
- name: 'Audit missing binaries'
|
||||
image: reg.devxy.io/rpkgs/build-env-alpine:3.24
|
||||
pull: true
|
||||
environment:
|
||||
B2_S3_ACCESS_KEY:
|
||||
from_secret: B2_S3_ACCESS_KEY
|
||||
B2_S3_SECRET_KEY:
|
||||
from_secret: B2_S3_SECRET_KEY
|
||||
PGPASS:
|
||||
from_secret: PGPASS
|
||||
REPO_RO_TOKEN:
|
||||
from_secret: REPO_RO_TOKEN
|
||||
|
||||
GITHUB_PAT:
|
||||
from_secret: GITHUB_PAT
|
||||
FORGEJO_TOKEN:
|
||||
from_secret: FORGEJO_TOKEN
|
||||
PLATFORM: alpine-321
|
||||
ARCH: amd64
|
||||
R_LIBS_USER: /mnt/cache/R-pkgs
|
||||
R_VERSION: 4.5.3
|
||||
commands:
|
||||
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
|
||||
- mkdir -p /mnt/cache/packages /mnt/cache/R-pkgs
|
||||
- rm -rf /mnt/cache/R-pkgs/00LOCK-*
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))'
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'source("local/weekly-missing-binaries-audit.R")'
|
||||
backend_options:
|
||||
kubernetes:
|
||||
resources:
|
||||
requests:
|
||||
memory: 2Gi
|
||||
cpu: 2000m
|
||||
limits:
|
||||
memory: 4Gi
|
||||
cpu: 2000m
|
||||
nodeSelector:
|
||||
kubernetes.io/arch: amd64
|
||||
tolerations:
|
||||
- key: 'CI'
|
||||
operator: 'Equal'
|
||||
value: 'true'
|
||||
effect: 'NoSchedule'
|
||||
|
|
@ -1,52 +0,0 @@
|
|||
when:
|
||||
- event: cron
|
||||
cron: weekly-audit-missing-alpine-321-arm64
|
||||
- event: manual
|
||||
evaluate: 'task == "weekly-audit-missing-alpine-321-arm64"'
|
||||
|
||||
skip_clone: true
|
||||
|
||||
steps:
|
||||
- name: 'Audit missing binaries'
|
||||
image: reg.devxy.io/rpkgs/build-env-alpine:3.24
|
||||
pull: true
|
||||
environment:
|
||||
B2_S3_ACCESS_KEY:
|
||||
from_secret: B2_S3_ACCESS_KEY
|
||||
B2_S3_SECRET_KEY:
|
||||
from_secret: B2_S3_SECRET_KEY
|
||||
PGPASS:
|
||||
from_secret: PGPASS
|
||||
REPO_RO_TOKEN:
|
||||
from_secret: REPO_RO_TOKEN
|
||||
|
||||
GITHUB_PAT:
|
||||
from_secret: GITHUB_PAT
|
||||
FORGEJO_TOKEN:
|
||||
from_secret: FORGEJO_TOKEN
|
||||
PLATFORM: alpine-321
|
||||
ARCH: arm64
|
||||
R_LIBS_USER: /mnt/cache/R-pkgs
|
||||
R_VERSION: 4.5.3
|
||||
commands:
|
||||
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
|
||||
- mkdir -p /mnt/cache/packages /mnt/cache/R-pkgs
|
||||
- rm -rf /mnt/cache/R-pkgs/00LOCK-*
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))'
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'source("local/weekly-missing-binaries-audit.R")'
|
||||
backend_options:
|
||||
kubernetes:
|
||||
resources:
|
||||
requests:
|
||||
memory: 2Gi
|
||||
cpu: 2000m
|
||||
limits:
|
||||
memory: 4Gi
|
||||
cpu: 2000m
|
||||
nodeSelector:
|
||||
kubernetes.io/arch: arm64
|
||||
tolerations:
|
||||
- key: 'CI'
|
||||
operator: 'Equal'
|
||||
value: 'true'
|
||||
effect: 'NoSchedule'
|
||||
|
|
@ -1,51 +0,0 @@
|
|||
when:
|
||||
- event: cron
|
||||
cron: weekly-audit-missing-alpine-322-amd64
|
||||
- event: manual
|
||||
|
||||
skip_clone: true
|
||||
|
||||
steps:
|
||||
- name: 'Audit missing binaries'
|
||||
image: reg.devxy.io/rpkgs/build-env-alpine:3.24
|
||||
pull: true
|
||||
environment:
|
||||
B2_S3_ACCESS_KEY:
|
||||
from_secret: B2_S3_ACCESS_KEY
|
||||
B2_S3_SECRET_KEY:
|
||||
from_secret: B2_S3_SECRET_KEY
|
||||
PGPASS:
|
||||
from_secret: PGPASS
|
||||
REPO_RO_TOKEN:
|
||||
from_secret: REPO_RO_TOKEN
|
||||
|
||||
GITHUB_PAT:
|
||||
from_secret: GITHUB_PAT
|
||||
FORGEJO_TOKEN:
|
||||
from_secret: FORGEJO_TOKEN
|
||||
PLATFORM: alpine-322
|
||||
ARCH: amd64
|
||||
R_LIBS_USER: /mnt/cache/R-pkgs
|
||||
R_VERSION: 4.5.3
|
||||
commands:
|
||||
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
|
||||
- mkdir -p /mnt/cache/packages /mnt/cache/R-pkgs
|
||||
- rm -rf /mnt/cache/R-pkgs/00LOCK-*
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))'
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'source("local/weekly-missing-binaries-audit.R")'
|
||||
backend_options:
|
||||
kubernetes:
|
||||
resources:
|
||||
requests:
|
||||
memory: 2Gi
|
||||
cpu: 2000m
|
||||
limits:
|
||||
memory: 4Gi
|
||||
cpu: 2000m
|
||||
nodeSelector:
|
||||
kubernetes.io/arch: amd64
|
||||
tolerations:
|
||||
- key: 'CI'
|
||||
operator: 'Equal'
|
||||
value: 'true'
|
||||
effect: 'NoSchedule'
|
||||
|
|
@ -1,50 +0,0 @@
|
|||
when:
|
||||
- event: cron
|
||||
cron: weekly-audit-missing-alpine-322-arm64
|
||||
- event: manual
|
||||
|
||||
skip_clone: true
|
||||
|
||||
steps:
|
||||
- name: 'Audit missing binaries'
|
||||
image: reg.devxy.io/rpkgs/build-env-alpine:3.24
|
||||
pull: true
|
||||
environment:
|
||||
B2_S3_ACCESS_KEY:
|
||||
from_secret: B2_S3_ACCESS_KEY
|
||||
B2_S3_SECRET_KEY:
|
||||
from_secret: B2_S3_SECRET_KEY
|
||||
PGPASS:
|
||||
from_secret: PGPASS
|
||||
REPO_RO_TOKEN:
|
||||
from_secret: REPO_RO_TOKEN
|
||||
GITHUB_PAT:
|
||||
from_secret: GITHUB_PAT
|
||||
FORGEJO_TOKEN:
|
||||
from_secret: FORGEJO_TOKEN
|
||||
PLATFORM: alpine-322
|
||||
ARCH: arm64
|
||||
R_LIBS_USER: /mnt/cache/R-pkgs
|
||||
R_VERSION: 4.5.3
|
||||
commands:
|
||||
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
|
||||
- mkdir -p /mnt/cache/packages /mnt/cache/R-pkgs
|
||||
- rm -rf /mnt/cache/R-pkgs/00LOCK-*
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))'
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'source("local/weekly-missing-binaries-audit.R")'
|
||||
backend_options:
|
||||
kubernetes:
|
||||
resources:
|
||||
requests:
|
||||
memory: 2Gi
|
||||
cpu: 2000m
|
||||
limits:
|
||||
memory: 4Gi
|
||||
cpu: 2000m
|
||||
nodeSelector:
|
||||
kubernetes.io/arch: arm64
|
||||
tolerations:
|
||||
- key: 'CI'
|
||||
operator: 'Equal'
|
||||
value: 'true'
|
||||
effect: 'NoSchedule'
|
||||
|
|
@ -1,51 +0,0 @@
|
|||
when:
|
||||
- event: cron
|
||||
cron: weekly-audit-missing-alpine-323-amd64
|
||||
- event: manual
|
||||
|
||||
skip_clone: true
|
||||
|
||||
steps:
|
||||
- name: 'Audit missing binaries'
|
||||
image: reg.devxy.io/rpkgs/build-env-alpine:3.24
|
||||
pull: true
|
||||
environment:
|
||||
B2_S3_ACCESS_KEY:
|
||||
from_secret: B2_S3_ACCESS_KEY
|
||||
B2_S3_SECRET_KEY:
|
||||
from_secret: B2_S3_SECRET_KEY
|
||||
PGPASS:
|
||||
from_secret: PGPASS
|
||||
REPO_RO_TOKEN:
|
||||
from_secret: REPO_RO_TOKEN
|
||||
|
||||
GITHUB_PAT:
|
||||
from_secret: GITHUB_PAT
|
||||
FORGEJO_TOKEN:
|
||||
from_secret: FORGEJO_TOKEN
|
||||
PLATFORM: alpine-323
|
||||
ARCH: amd64
|
||||
R_LIBS_USER: /mnt/cache/R-pkgs
|
||||
R_VERSION: 4.5.3
|
||||
commands:
|
||||
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
|
||||
- mkdir -p /mnt/cache/packages /mnt/cache/R-pkgs
|
||||
- rm -rf /mnt/cache/R-pkgs/00LOCK-*
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'pak::pak(c("git::https://codefloe.com/rpkgs/bincraft.git", "httr2", "jsonlite"))'
|
||||
- /opt/R/$R_VERSION/bin/R -q -e 'source("local/weekly-missing-binaries-audit.R")'
|
||||
backend_options:
|
||||
kubernetes:
|
||||
resources:
|
||||
requests:
|
||||
memory: 2Gi
|
||||
cpu: 2000m
|
||||
limits:
|
||||
memory: 4Gi
|
||||
cpu: 2000m
|
||||
nodeSelector:
|
||||
kubernetes.io/arch: amd64
|
||||
tolerations:
|
||||
- key: 'CI'
|
||||
operator: 'Equal'
|
||||
value: 'true'
|
||||
effect: 'NoSchedule'
|
||||
Some files were not shown because too many files have changed in this diff Show more
Loading…
Reference in a new issue