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use pak devel on alpine

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This commit is contained in:
Patrick Schratz 2024-11-25 11:20:39 +01:00
commit 7ae8c3e596
Signed by: pat-s
GPG key ID: 3C6318841EF78925
13 changed files with 15 additions and 18 deletions
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3
.woodpecker/build-alpine-320-amd64.yaml
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@ -48,7 +48,8 @@ steps:
# biplotbootGUI: somehow ubuntu still hangs even when using xvfb-run # biplotbootGUI: somehow ubuntu still hangs even when using xvfb-run
# doBy: hangs on alpine # doBy: hangs on alpine
# later: hangs on ubuntu # later: hangs on ubuntu
- xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL, repos = structure(c(devxy = 'https://cran.devxy.io/amd64/alpine320/latest', CRAN = 'https://cloud.r-project.org'))); library(dplyr); library(bincraftR); cran_pkgs = tools::CRAN_package_db()[['Package']]; '%nin%' <- Negate('%in%'); foo = query_metadata_table() |> filter(platform == 'alpine-320', arch == 'amd64') |> distinct(name) |> pull(name); pkgs <- dput(cran_pkgs[cran_pkgs %nin% foo][0:300]); options(progressr.enable = TRUE); pkgs = c('qtlc', 'qtlnet', 'quadmesh', 'quadtree', 'qualmap', 'quantities', 'R2BayesX', 'R2PPT', 'R2wd', 'r4lineups', 'R6causal', 'radiant.basics', 'radiant.design', 'radiant.model', 'radiant.multivariate', 'rags2ridges', 'RAINBOWR', 'RandomWalker', 'rangeMapper', 'rangeModelMetadata', 'rapidphylo', 'RAppArmor', 'raptr', 'Raquifer', 'rasterDT', 'rasterKernelEstimates', 'rasterList', 'rasterVis', 'Rata', 'ratematrix', 'RationalMatrix', 'ratioOfQsprays', 'RavenR', 'ravetools', 'rayshader', 'raytracing', 'rbgm', 'rbi', 'rbi.helpers', 'Rblpapi', 'rblt', 'RCA', 'rcaiman', 'Rcatch22', 'rcausim', 'rcccd', 'rccola', 'rcdd', 'RCGLS', 'RchivalTag', 'RcmdrMisc', 'RcmdrPlugin.aRnova', 'RcmdrPlugin.BiclustGUI', 'RcmdrPlugin.BWS1', 'RcmdrPlugin.BWS2', 'RcmdrPlugin.BWS3', 'RcmdrPlugin.cpd', 'RcmdrPlugin.DCCV', 'RcmdrPlugin.DCE', 'RcmdrPlugin.depthTools', 'RcmdrPlugin.DoE', 'RcmdrPlugin.EACSPIR', 'RcmdrPlugin.EBM', 'RcmdrPlugin.EcoVirtual', 'RcmdrPlugin.Export', 'RcmdrPlugin.EZR', 'RcmdrPlugin.FactoMineR', 'RcmdrPlugin.GWRM', 'RcmdrPlugin.HH', 'RcmdrPlugin.KMggplot2', 'RcmdrPlugin.MA', 'RcmdrPlugin.MPAStats', 'RcmdrPlugin.NMBU', 'RcmdrPlugin.orloca', 'RcmdrPlugin.PcaRobust', 'RcmdrPlugin.RiskDemo', 'RcmdrPlugin.RMTCJags', 'RcmdrPlugin.ROC', 'RcmdrPlugin.sos', 'RcmdrPlugin.survival', 'RcmdrPlugin.TeachingDemos', 'RcmdrPlugin.TeachStat', 'RcmdrPlugin.temis', 'RcmdrPlugin.UCA', 'RcmdrPlugin.WorldFlora', 'rCNV', 'rcontroll', 'Rcplex', 'RcppBigIntAlgos', 'RcppCWB', 'RcppGSL', 'RcppMeCab', 'RcppZiggurat', 'rcrimeanalysis', 'rcssci', 'RCTrep', 'rdflib', 'RDieHarder', 'RDM', 'rdracor', 'rdwplus', 'ReadDIM', 'readNSx', 'readtext', 'rechaRge', 'Recocrop', 'recolorize', 'red', 'redcas', 'redist', 'redistverse', 'redland', 'redlistr', 'redux', 'ref.ICAR', 'refreg', 'regda', 'regrrr', 'Relectoral', 'remote', 'reproj', 'rerddap', 'rerddapXtracto', 'reslife', 'restoptr', 'resultant', 'ReSurv', 'ReviewR', 'revtools', 'Rfast2', 'rflexscan', 'rflsgen', 'RFOC', 'rFUSION', 'RGCxGC', 'RGENERATEPREC', 'rgeoboundaries', 'rgeopat2', 'rglplus', 'riAFTBART', 'RIdeogram', 'Riemann', 'RInno', 'RiskMap', 'riverdist', 'rivnet', 'RKHSMetaMod', 'rKIN', 'RKorAPClient', 'rleafmap', 'rLFT', 'Rlibeemd', 'Rlibkdv'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-320'))" - R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
- xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); pkgs = c('seewave', 'segen', 'SelectBoost', 'SELF', 'SEMdeep', 'semicmprskcoxmsm', 'SemiCompRisks', 'SemiPar.depCens', 'semnar', 'sentiment.ai', 'sephora', 'sfarrow', 'sfcentral', 'sfdct', 'sfhotspot', 'sfnetworks', 'sftrack', 'sgsR', 'ShapePattern', 'shapes', 'ShapeSelectForest', 'SHAPforxgboost', 'shapviz', 'ShellChron', 'shelter', 'shiny.benchmark', 'shinybrms', 'shinyCohortBuilder', 'shinyIRT', 'ShinyItemAnalysis', 'shinyRGL', 'shinytest2', 'shrinkDSM', 'SIAmodules', 'SIGN', 'siland', 'simCAT', 'SimDesign', 'SimInf', 'SimNPH', 'simplePHENOTYPES', 'simplexreg', 'SimRDS', 'SimSurvey', 'simulariatools', 'sirad', 'sisireg', 'sits', 'SLBDD', 'slideview', 'smartmap', 'smcryptoR', 'SMDIC', 'smile', 'SMITIDstruct', 'smlmkalman', 'smoothAPC', 'smosr', 'snplinkage', 'sociome', 'sodium', 'SoilSaltIndex', 'spacejamr', 'SpaDES', 'SpaDES.core', 'SpaDES.tools', 'spANOVA', 'sparrpowR', 'sparseCov', 'SPARSEMODr', 'SpatGC', 'SpatGRID', 'spatialEco', 'SpatialEpi', 'SpatialfdaR', 'SpatialGraph', 'SpatialKDE', 'SpatialPosition', 'spatialreg', 'SpatialRegimes', 'SpaTopic', 'spatsurv', 'spbal', 'spDates', 'spdynmod', 'spectacles', 'spectator', 'spectralR', 'spectrino', 'Spectrum', 'speech', 'spemd', 'spex', 'spGARCH', 'sphereplot', 'sphet', 'spidR', 'spldv', 'splm', 'spm', 'spm2', 'spsur', 'spup', 'SQL', 'SQRL', 'SRTsim', 'ssdGSA', 'SSDM', 'ssfa', 'ssh', 'SSIMmap', 'SSN2', 'SSNbayes', 'SSNbler', 'sta', 'stacomiR', 'stacomirtools', 'stampr', 'stan4bart', 'stars', 'starsExtra', 'starsTileServer', 'StatDA', 'statgenMPP', 'stcos', 'stelfi', 'stepgbm', 'steprf', 'steps', 'stfit', 'stopp', 'stops', 'stpphawkes', 'stppSim', 'strand', 'stratbr', 'StratifiedRF', 'StreamMetabolism', 'streetscape', 'string2path', 'stxplore', 'SubTS', 'SubtypeDrug', 'SUNGEO', 'SurfaceTortoise', 'SurrogateRsq', 'surrosurv', 'surveyPrev', 'surveyvoi', 'survivalMPLdc', 'survSNP', 'svars', 'swaRmverse', 'swfscAirDAS', 'swfscDAS', 'SWMPrExtension', 'symbolicDA', 'symbolicQspray', 'symengine', 'SymTS', 'T4cluster', 'tabularaster', 'tailDepFun', 'tanaka', 'taskscheduleR', 'tcpl', 'TDAkit', 'TDLM', 'tealeaves', 'tectonicr', 'telefit', 'TensorTools', 'terra', 'terrainr', 'tessellation', 'tesseract', 'TestGardener', 'texor', 'texPreview', 'TextForecast', 'textshaping', 'tfevents', 'tggd', 'thames', 'theft', 'theftdlc', 'threeBrain', 'tidybins', 'tidycensus', 'TidyConsultant', 'tidygeoRSS', 'tidync', 'tidyplots', 'tidyrgee', 'tidysdm', 'tidyterra', 'tigris', 'tiledb', 'timeLineGraphics', 'TimeVizPro', 'tkImgR', 'tkRplotR', 'tmap', 'tmaptools', 'TML', 'TOC', 'togglr', 'tongfen', 'Toothnroll', 'topicdoc', 'topicmodels', 'topoDistance', 'toxSummary', 'TPMplt', 'track2KBA', 'trackeRapp', 'traineR', 'transformr', 'transfR', 'traveltimeR', 'trigpoints', 'tripEstimation', 'TroublemakeR', 'trtswitch', 'truh', 'TSCI', 'TUFLOWR', 'tvthemes', 'twangMediation', 'twangRDC', 'uavRmp', 'udunits2', 'ugatsdb', 'ulex', 'ultrapolaRplot', 'UnalR', 'UniprotR', 'units', 'upstartr', 'ursa', 'usdm', 'valuemap', 'VancouvR', 'vapour', 'VBLPCM', 'VC2copula', 'vein', 'versioning', 'vines', 'virtualspecies', 'virtuoso', 'visaOTR', 'visStatistics', 'visualpred', 'visvow', 'vivid', 'vmeasur', 'voi', 'vol2birdR', 'voluModel', 'vvauditor', 'wactor', 'wallace', 'warabandi', 'washr', 'WaveletMLbestFL', 'waver', 'waves', 'WCluster', 'wdnr.gis', 'wdpar', 'weatherOz', 'webglobe', 'webSDM', 'WEGE', 'weightedGCM', 'wiesbaden', 'wildlifeDI', 'windAC', 'WMAP', 'WQM', 'xgb2sql', 'xgboost', 'xrf', 'xRing', 'xslt', 'zcurve', 'zonebuilder', 'zoomerjoin'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc', 'RVAideMemoire', 'pbkrtest', 'seewave')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-320'))"
### Manual pkg builds ### Manual pkg builds
# webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178 # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
# RInno: Windows-only # RInno: Windows-only

8
.woodpecker/build-alpine-320-arm64.yaml
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2
.woodpecker/update-package-index-alpine-320-amd64.yaml
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@ -24,7 +24,7 @@ steps:
# download latest package version (avoid having to rebuild image every time) # download latest package version (avoid having to rebuild image every time)
# rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169 # rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169
- git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git . - git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git .
# - rm -rf /mnt/cache/packages/* - rm -rf /mnt/cache/packages/*
- R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
- cd /mnt/cache/packages - cd /mnt/cache/packages

2
.woodpecker/update-package-index-alpine-320-arm64.yaml
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@ -24,7 +24,7 @@ steps:
# download latest package version (avoid having to rebuild image every time) # download latest package version (avoid having to rebuild image every time)
# rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169 # rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169
- git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git . - git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git .
# - rm -rf /mnt/cache/packages/* - rm -rf /mnt/cache/packages/*
- R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
- cd /mnt/cache/packages - cd /mnt/cache/packages

2
.woodpecker/update-package-index-redhat-8-amd64.yaml
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@ -24,7 +24,7 @@ steps:
# download latest package version (avoid having to rebuild image every time) # download latest package version (avoid having to rebuild image every time)
# rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169 # rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169
- git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git . - git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git .
# - rm -rf /mnt/cache/packages/* - rm -rf /mnt/cache/packages/*
- R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- cd /mnt/cache/packages - cd /mnt/cache/packages
- R -q -e 'options(crayon.enabled = TRUE); library(bincraftR); future::plan("multisession", workers = future::availableCores()); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index()' - R -q -e 'options(crayon.enabled = TRUE); library(bincraftR); future::plan("multisession", workers = future::availableCores()); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index()'

2
.woodpecker/update-package-index-redhat-8-arm64.yaml
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@ -24,7 +24,7 @@ steps:
# download latest package version (avoid having to rebuild image every time) # download latest package version (avoid having to rebuild image every time)
# rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169 # rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169
- git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git . - git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git .
# - rm -rf /mnt/cache/packages/* - rm -rf /mnt/cache/packages/*
- R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
- cd /mnt/cache/packages - cd /mnt/cache/packages

2
.woodpecker/update-package-index-redhat-9-amd64.yaml
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@ -24,7 +24,7 @@ steps:
# download latest package version (avoid having to rebuild image every time) # download latest package version (avoid having to rebuild image every time)
# rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169 # rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169
- git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git . - git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git .
# - rm -rf /mnt/cache/packages/* - rm -rf /mnt/cache/packages/*
- R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
- cd /mnt/cache/packages - cd /mnt/cache/packages

2
.woodpecker/update-package-index-redhat-9-arm64.yaml
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@ -24,7 +24,7 @@ steps:
# download latest package version (avoid having to rebuild image every time) # download latest package version (avoid having to rebuild image every time)
# rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169 # rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169
- git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git . - git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git .
# - rm -rf /mnt/cache/packages/* - rm -rf /mnt/cache/packages/*
- R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
- cd /mnt/cache/packages - cd /mnt/cache/packages

2
.woodpecker/update-package-index-ubuntu-2204-amd64.yaml
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@ -24,7 +24,7 @@ steps:
# download latest package version (avoid having to rebuild image every time) # download latest package version (avoid having to rebuild image every time)
# rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169 # rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169
- git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git . - git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git .
# - rm -rf /mnt/cache/packages/* - rm -rf /mnt/cache/packages/*
- R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
- cd /mnt/cache/packages - cd /mnt/cache/packages

2
.woodpecker/update-package-index-ubuntu-2204-arm64.yaml
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@ -24,7 +24,7 @@ steps:
# download latest package version (avoid having to rebuild image every time) # download latest package version (avoid having to rebuild image every time)
# rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169 # rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169
- git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git . - git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git .
# - rm -rf /mnt/cache/packages/* - rm -rf /mnt/cache/packages/*
- R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
- cd /mnt/cache/packages - cd /mnt/cache/packages

2
.woodpecker/update-package-index-ubuntu-2404-amd64.yaml
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@ -24,7 +24,7 @@ steps:
# download latest package version (avoid having to rebuild image every time) # download latest package version (avoid having to rebuild image every time)
# rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169 # rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169
- git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git . - git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git .
# # - rm -rf /mnt/cache/packages/* - rm -rf /mnt/cache/packages/*
- R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
- cd /mnt/cache/packages - cd /mnt/cache/packages

2
.woodpecker/update-package-index-ubuntu-2404-arm64.yaml
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@ -24,7 +24,7 @@ steps:
# download latest package version (avoid having to rebuild image every time) # download latest package version (avoid having to rebuild image every time)
# rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169 # rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169
- git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git . - git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git .
# - rm -rf /mnt/cache/packages/* - rm -rf /mnt/cache/packages/*
- R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")' - R -q -e 'pak::pak("git::https://gitlab.com/devxy/r-package-binaries/bincraftr.git")'
- R -q -e 'packageVersion("bincraftR")' - R -q -e 'packageVersion("bincraftR")'
- cd /mnt/cache/packages - cd /mnt/cache/packages

2
docker/Containerfile-alpine-320
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@ -44,7 +44,7 @@ RUN bash -c 'echo -e "PKG_SYSREQS=TRUE\nPKG_SYSREQS_VERBOSE=TRUE" > ~/.Renviron'
RUN curl -O "https://devxy-r-builds.s3.eu-central-2.amazonaws.com/alpine320/r-${R_VERSION}_1_$(arch).apk" RUN curl -O "https://devxy-r-builds.s3.eu-central-2.amazonaws.com/alpine320/r-${R_VERSION}_1_$(arch).apk"
RUN apk add --allow-untrusted "r-${R_VERSION}_1_$(arch).apk" && rm "r-${R_VERSION}_1_$(arch).apk" RUN apk add --allow-untrusted "r-${R_VERSION}_1_$(arch).apk" && rm "r-${R_VERSION}_1_$(arch).apk"
RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))' RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/devel/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
# FIXME: switch to pak after https://github.com/r-lib/pak/issues/628 # FIXME: switch to pak after https://github.com/r-lib/pak/issues/628
# deps from pak::pkg_deps(".")$package # deps from pak::pkg_deps(".")$package