build

.woodpecker/build-alpine-320-amd64.yaml

@@ -48,7 +48,7 @@ steps:
       # biplotbootGUI: somehow ubuntu still hangs even when using xvfb-run
       # doBy: hangs on alpine
       # later: hangs on ubuntu
-      - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL, repos = structure(c(devxy = 'https://cran.devxy.io/amd64/alpine320/latest', CRAN = 'https://cloud.r-project.org'))); library(dplyr); library(bincraftR); cran_pkgs = tools::CRAN_package_db()[['Package']]; '%nin%' <- Negate('%in%'); foo = query_metadata_table() |> filter(platform == 'alpine-320', arch == 'amd64') |> distinct(name) |> pull(name); pkgs <- dput(cran_pkgs[cran_pkgs %nin% foo][0:300]); options(progressr.enable = TRUE); pkgs = c('doBy', 'DoE.base', 'DoE.wrapper', 'eha', 'FrF2', 'FrF2.catlg128',  'gRain', 'gRbase', 'IDPmisc', 'MediaNews', 'PPRL', 'ppsbm', 'praatpicture', 'practicalSigni',  'PRECAST', 'pRecipe', 'predhy.GUI', 'predict3d', 'predictoR',  'pressuRe', 'PrevMap', 'prevR', 'PriceIndices', 'prioritizr',  'prism', 'prisonbrief', 'ProFAST', 'proffer', 'ProfoundData',  'ProgModule', 'proj4', 'promor', 'protolite', 'prqlr', 'prWarp',  'psBayesborrow', 'psgp', 'pspatreg', 'psSubpathway', 'psychonetrics',  'PWIR', 'qad', 'qdap', 'QF', 'qlcVisualize', 'qmd', 'qMRI', 'QRAGadget',  'qrencoder', 'qrlabelr', 'QRM', 'qspray', 'qtkit', 'qtlc', 'qtlnet',  'quadmesh', 'quadtree', 'qualmap', 'quantities', 'R2BayesX',  'R2PPT', 'R2wd', 'r4lineups', 'R6causal', 'radiant.basics', 'radiant.design',  'radiant.model', 'radiant.multivariate', 'rags2ridges', 'RAINBOWR',  'RandomWalker', 'rangeMapper', 'rangeModelMetadata', 'rapidphylo',  'RAppArmor', 'raptr', 'Raquifer', 'rasterDT', 'rasterKernelEstimates',  'rasterList', 'rasterVis', 'Rata', 'ratematrix', 'RationalMatrix',  'ratioOfQsprays', 'RavenR', 'ravetools', 'rayshader', 'raytracing',  'rbgm', 'rbi', 'rbi.helpers', 'Rblpapi', 'rblt', 'RCA', 'rcaiman',  'Rcatch22', 'rcausim', 'rcccd', 'rccola', 'rcdd', 'RCGLS', 'RchivalTag',  'RcmdrMisc', 'RcmdrPlugin.aRnova', 'RcmdrPlugin.BiclustGUI',  'RcmdrPlugin.BWS1', 'RcmdrPlugin.BWS2', 'RcmdrPlugin.BWS3', 'RcmdrPlugin.cpd',  'RcmdrPlugin.DCCV', 'RcmdrPlugin.DCE', 'RcmdrPlugin.depthTools',  'RcmdrPlugin.DoE', 'RcmdrPlugin.EACSPIR', 'RcmdrPlugin.EBM',  'RcmdrPlugin.EcoVirtual', 'RcmdrPlugin.Export', 'RcmdrPlugin.EZR',  'RcmdrPlugin.FactoMineR', 'RcmdrPlugin.GWRM', 'RcmdrPlugin.HH',  'RcmdrPlugin.KMggplot2', 'RcmdrPlugin.MA', 'RcmdrPlugin.MPAStats',  'RcmdrPlugin.NMBU', 'RcmdrPlugin.orloca', 'RcmdrPlugin.PcaRobust',  'RcmdrPlugin.RiskDemo', 'RcmdrPlugin.RMTCJags', 'RcmdrPlugin.ROC',  'RcmdrPlugin.sos', 'RcmdrPlugin.survival', 'RcmdrPlugin.TeachingDemos',  'RcmdrPlugin.TeachStat', 'RcmdrPlugin.temis', 'RcmdrPlugin.UCA',  'RcmdrPlugin.WorldFlora', 'rCNV', 'rcontroll', 'Rcplex', 'RcppBigIntAlgos',  'RcppCWB', 'RcppGSL', 'RcppMeCab', 'RcppZiggurat', 'rcrimeanalysis',  'rcssci', 'RCTrep', 'rdflib', 'RDieHarder', 'RDM', 'rdracor',  'rdwplus', 'ReadDIM', 'readNSx', 'readtext', 'rechaRge', 'Recocrop',  'recolorize', 'red', 'redcas', 'redist', 'redistverse', 'redland',  'redlistr', 'redux', 'ref.ICAR', 'refreg', 'regda', 'regrrr',  'Relectoral', 'remote', 'reproj', 'rerddap', 'rerddapXtracto',  'reslife', 'restoptr', 'resultant', 'ReSurv', 'ReviewR', 'revtools',  'Rfast2', 'rflexscan', 'rflsgen', 'RFOC', 'rFUSION', 'RGCxGC',  'RGENERATEPREC', 'rgeoboundaries', 'rgeopat2'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-320'))"
+      - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL, repos = structure(c(devxy = 'https://cran.devxy.io/amd64/alpine320/latest', CRAN = 'https://cloud.r-project.org'))); library(dplyr); library(bincraftR); cran_pkgs = tools::CRAN_package_db()[['Package']]; '%nin%' <- Negate('%in%'); foo = query_metadata_table() |> filter(platform == 'alpine-320', arch == 'amd64') |> distinct(name) |> pull(name); pkgs <- dput(cran_pkgs[cran_pkgs %nin% foo][0:300]); options(progressr.enable = TRUE); pkgs = c('qtlc', 'qtlnet', 'quadmesh', 'quadtree', 'qualmap',  'quantities', 'R2BayesX', 'R2PPT', 'R2wd', 'r4lineups', 'R6causal',  'radiant.basics', 'radiant.design', 'radiant.model', 'radiant.multivariate',  'rags2ridges', 'RAINBOWR', 'RandomWalker', 'rangeMapper', 'rangeModelMetadata',  'rapidphylo', 'RAppArmor', 'raptr', 'Raquifer', 'rasterDT', 'rasterKernelEstimates',  'rasterList', 'rasterVis', 'Rata', 'ratematrix', 'RationalMatrix',  'ratioOfQsprays', 'RavenR', 'ravetools', 'rayshader', 'raytracing',  'rbgm', 'rbi', 'rbi.helpers', 'Rblpapi', 'rblt', 'RCA', 'rcaiman',  'Rcatch22', 'rcausim', 'rcccd', 'rccola', 'rcdd', 'RCGLS', 'RchivalTag',  'RcmdrMisc', 'RcmdrPlugin.aRnova', 'RcmdrPlugin.BiclustGUI',  'RcmdrPlugin.BWS1', 'RcmdrPlugin.BWS2', 'RcmdrPlugin.BWS3', 'RcmdrPlugin.cpd',  'RcmdrPlugin.DCCV', 'RcmdrPlugin.DCE', 'RcmdrPlugin.depthTools',  'RcmdrPlugin.DoE', 'RcmdrPlugin.EACSPIR', 'RcmdrPlugin.EBM',  'RcmdrPlugin.EcoVirtual', 'RcmdrPlugin.Export', 'RcmdrPlugin.EZR',  'RcmdrPlugin.FactoMineR', 'RcmdrPlugin.GWRM', 'RcmdrPlugin.HH',  'RcmdrPlugin.KMggplot2', 'RcmdrPlugin.MA', 'RcmdrPlugin.MPAStats',  'RcmdrPlugin.NMBU', 'RcmdrPlugin.orloca', 'RcmdrPlugin.PcaRobust',  'RcmdrPlugin.RiskDemo', 'RcmdrPlugin.RMTCJags', 'RcmdrPlugin.ROC',  'RcmdrPlugin.sos', 'RcmdrPlugin.survival', 'RcmdrPlugin.TeachingDemos',  'RcmdrPlugin.TeachStat', 'RcmdrPlugin.temis', 'RcmdrPlugin.UCA',  'RcmdrPlugin.WorldFlora', 'rCNV', 'rcontroll', 'Rcplex', 'RcppBigIntAlgos',  'RcppCWB', 'RcppGSL', 'RcppMeCab', 'RcppZiggurat', 'rcrimeanalysis',  'rcssci', 'RCTrep', 'rdflib', 'RDieHarder', 'RDM', 'rdracor',  'rdwplus', 'ReadDIM', 'readNSx', 'readtext', 'rechaRge', 'Recocrop',  'recolorize', 'red', 'redcas', 'redist', 'redistverse', 'redland',  'redlistr', 'redux', 'ref.ICAR', 'refreg', 'regda', 'regrrr',  'Relectoral', 'remote', 'reproj', 'rerddap', 'rerddapXtracto',  'reslife', 'restoptr', 'resultant', 'ReSurv', 'ReviewR', 'revtools',  'Rfast2', 'rflexscan', 'rflsgen', 'RFOC', 'rFUSION', 'RGCxGC',  'RGENERATEPREC', 'rgeoboundaries', 'rgeopat2', 'rglplus', 'riAFTBART',  'RIdeogram', 'Riemann', 'RInno', 'RiskMap', 'riverdist', 'rivnet',  'RKHSMetaMod', 'rKIN', 'RKorAPClient', 'rleafmap', 'rLFT', 'Rlibeemd',  'Rlibkdv'); pkgs = setdiff(pkgs, c('RInno', 'MediaNews', 'DoE.base', 'DoE.wrapper', 'FrF2', 'FrF2.catlg128', 'eha', 'gRain', 'gRbase', 'doBy', 'IDPmisc')); progressr::handlers('cli'); progressr::handlers(global = TRUE); foo = lapply(pkgs, function(x) bincraftR::build_binary_package(x, debug = FALSE, force = TRUE, platform = 'alpine-320'))"
       ### Manual pkg builds
       # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
       # RInno: Windows-only