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build amd

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This commit is contained in:
Patrick Schratz 2024-09-18 19:02:22 +02:00
commit 29c0bb7c10
Signed by: pat-s
GPG key ID: 3C6318841EF78925
1 changed files with 41 additions and 41 deletions
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100
.woodpecker/build.yaml
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@ -8,30 +8,30 @@ depends_on:
matrix:
include:
- PLATFORM: redhat-9
BLOCK: 20099:21169
ARCH: arm64
NCPUS: 2
MEMORY: 29Gi
STRATEGY: multisession
- PLATFORM: redhat-8
BLOCK: 20099:21169
ARCH: arm64
NCPUS: 2
MEMORY: 29Gi
STRATEGY: multisession
- PLATFORM: ubuntu-2404
BLOCK: 20099:21169
ARCH: arm64
NCPUS: 2
MEMORY: 29Gi
STRATEGY: multisession
- PLATFORM: ubuntu-2204
BLOCK: 20099:21169
ARCH: arm64
NCPUS: 2
MEMORY: 29Gi
STRATEGY: multisession
# - PLATFORM: redhat-9
# BLOCK: 20099:21169
# ARCH: arm64
# NCPUS: 2
# MEMORY: 29Gi
# STRATEGY: multisession
# - PLATFORM: redhat-8
# BLOCK: 20099:21169
# ARCH: arm64
# NCPUS: 2
# MEMORY: 29Gi
# STRATEGY: multisession
# - PLATFORM: ubuntu-2404
# BLOCK: 20099:21169
# ARCH: arm64
# NCPUS: 2
# MEMORY: 29Gi
# STRATEGY: multisession
# - PLATFORM: ubuntu-2204
# BLOCK: 20099:21169
# ARCH: arm64
# NCPUS: 2
# MEMORY: 29Gi
# STRATEGY: multisession
- PLATFORM: alpine-320
BLOCK: 7065:length(pkgs)
ARCH: arm64
@ -39,30 +39,30 @@ matrix:
MEMORY: 29Gi
STRATEGY: multisession
### AMD
# - PLATFORM: redhat-9
# BLOCK: 1:length(pkgs)
# ARCH: amd64
# NCPUS: 2
# MEMORY: 29Gi
# STRATEGY: multisession
# - PLATFORM: redhat-8
# BLOCK: 1:length(pkgs)
# ARCH: amd64
# NCPUS: 2
# MEMORY: 29Gi
# STRATEGY: multisession
# - PLATFORM: ubuntu-2404
# BLOCK: 1:length(pkgs)
# ARCH: amd64
# NCPUS: 2
# MEMORY: 29Gi
# STRATEGY: multisession
# - PLATFORM: ubuntu-2204
# BLOCK: 1:length(pkgs)
# ARCH: amd64
# NCPUS: 2
# MEMORY: 29Gi
# STRATEGY: multisession
- PLATFORM: redhat-9
BLOCK: 1:length(pkgs)
ARCH: amd64
NCPUS: 2
MEMORY: 29Gi
STRATEGY: multisession
- PLATFORM: redhat-8
BLOCK: 1:length(pkgs)
ARCH: amd64
NCPUS: 2
MEMORY: 29Gi
STRATEGY: multisession
- PLATFORM: ubuntu-2404
BLOCK: 1:length(pkgs)
ARCH: amd64
NCPUS: 2
MEMORY: 29Gi
STRATEGY: multisession
- PLATFORM: ubuntu-2204
BLOCK: 1:length(pkgs)
ARCH: amd64
NCPUS: 2
MEMORY: 29Gi
STRATEGY: multisession
- PLATFORM: alpine-320
BLOCK: 1090:length(pkgs)
ARCH: amd64
@ -96,7 +96,7 @@ steps:
# more complicated system dependencies which pak cannot resolve
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
# set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point
# - R -q -e 'options(crayon.enabled = TRUE, Ncpus = ${NCPUS}, future.globals.onReference = NULL); pkgs = tools::CRAN_package_db()[[1]]; pkgs = setdiff(pkgs[${BLOCK}], c( "RInno", "skedastic", "ROI.plugin.qpoases", "RPushbullet", "SimNPH", "SimDesign","simCAT", "SIAmodules", "shinytest2", "shinyIRT", "ShinyItemAnalysis", "shiny.benchmark", "scDIFtest", "RSP", "ROracle", "ROI.plugin.qpoases", "ROI.plugin.highs", "ROI.plugin.cplex", "RmecabKo", "rmarchingcubes", "RcppMeCab", "Rcplex", "ravetools", "Rbeast", "Rblpapi", "RcppEnsmallen", "qtkit", "priorCON", "prior3D", "PerFit", "outlierensembles", "nomnoml", "mxfda", "MultBiplotR", "mstDIF", "minic", "Mega2R", "mdsr", "MCARtest", "makepipe", "lordif", "KSgeneral", "kequate", "jstager", "jrt", "irtreliability", "irtQ", "irtpwr", "irtGUI", "irtawsi", "highs", "GRShiny", "gpuR", "GPCMlasso", "googletraffic", "giacR", "gamstransfer", "flps", "flow", "filters", "faoutlier", "EthSEQ", "equateIRT", "EnrichIntersect", "EFA.dimensions", "DFIT", "designmatch", "dartR.spatial", "dartR.sexlinked", "dartR.sim", "dartR.popgen", "dartR.captive", "dartR.base","dartR", "D3mirt", "ctsem", "ctgdist", "CoTiMA", "ConvertPar", "cncaGUI", "clrng", "bscui", "BifactorIndicesCalculator", "autoFC", "airt")); library(bincraftR); future::plan("${STRATEGY}", workers = ${NCPUS}, rscript_startup = quote(options(crayon.enabled = TRUE))); options(progressr.enable = TRUE); progressr::handlers('cli'); progressr::handlers(global = TRUE); pkgs = foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = FALSE, force = TRUE, platform = "${PLATFORM}"))'
- R -q -e 'options(crayon.enabled = TRUE, Ncpus = ${NCPUS}, future.globals.onReference = NULL); pkgs = tools::CRAN_package_db()[[1]]; pkgs = setdiff(pkgs[${BLOCK}], c("RInno", "skedastic", "RPushbullet", "SimNPH", "SimDesign","simCAT", "SIAmodules", "shinytest2", "shinyIRT", "ShinyItemAnalysis", "shiny.benchmark", "scDIFtest", "RSP", "ROracle", "ROI.plugin.qpoases", "ROI.plugin.cplex", "RmecabKo", "rmarchingcubes", "RcppMeCab", "Rcplex", "ravetools", "Rbeast", "Rblpapi", "RcppEnsmallen", "qtkit", "priorCON", "prior3D", "PerFit", "outlierensembles", "nomnoml", "mxfda", "MultBiplotR", "mstDIF", "mdsr", "makepipe", "lordif", "KSgeneral", "kequate", "jstager", "jrt", "irtreliability", "irtQ", "irtpwr", "irtawsi", "GRShiny", "gpuR", "googletraffic", "giacR", "gamstransfer", "flps", "flow", "filters", "faoutlier", "equateIRT", "EnrichIntersect", "EFA.dimensions", "DFIT", "D3mirt", "ctgdist", "CoTiMA", "ConvertPar", "clrng", "bscui", "BifactorIndicesCalculator", "autoFC", "airt")); library(bincraftR); future::plan("${STRATEGY}", workers = ${NCPUS}, rscript_startup = quote(options(crayon.enabled = TRUE))); options(progressr.enable = TRUE); progressr::handlers('cli'); progressr::handlers(global = TRUE); pkgs = foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = FALSE, force = TRUE, platform = "${PLATFORM}"))'
### Manual pkg builds
# webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178
# RInno: Windows-only
@ -128,7 +128,7 @@ steps:
# tfrmtbuilder -> V8 (alpine)
# Rcmdr (alpine)
# readstata13 (alpine)
- xvfb-run R -q -e 'options(crayon.enabled = TRUE, Ncpus = ${NCPUS}, future.globals.onReference = NULL); pkgs = c( "RcmdrPlugin.orloca", "RcmdrPlugin.PcaRobust", "RcmdrPlugin.RiskDemo", "RcmdrPlugin.RMTCJags", "RcmdrPlugin.ROC", "RcmdrPlugin.sos" , "RcmdrPlugin.survival", "RcmdrPlugin.TeachingDemos", "RcmdrPlugin.TeachStat", "RcmdrPlugin.temis", "RcmdrPlugin.UCA", "RcmdrPlugin.WorldFlora", "streamDAG", "stan4bart", "snplinkage", "saeHB.panel.beta", "rTwig", "rswipl", "RPointCloud", "rPDBapi", "rolog", "rmcfs", "rjags", "ResultModelManager", "RcppCWB", "RcmdrPlugin.WorldFlora", "RcmdrPlugin.UCA", "RcmdrPlugin.temis", "RcmdrPlugin.TeachStat", "RcmdrPlugin.TeachingDemos", "RcmdrPlugin.survival", "RcmdrPlugin.sos", "RcmdrPlugin.ROC", "RcmdrPlugin.RMTCJags", "RcmdrPlugin.RiskDemo", "RcmdrPlugin.PcaRobust", "RclusTool", "Rbeast", "rayrender", "quanteda.textmodels", "polmineR", "plotBart", "NlinTS", "ndtv", "overtureR", "mathml", "magickGUI", "lgpr", "KappaGUI", "historicalborrow", "GSODR", "GRIDCOPULA", "googleAnalyticsR", "fluidsynth", "EventDetectGUI", "evalITR", "EBcoBART", "deeptrafo", "dbarts", "CRE", "countSTAR", "bartMan", "bartCause", "altmeta", "EthSEQ", "dartR.spatial", "dartR.sim", "gwid", "Mega2R", "priorCON", "prior3D", "MCARtest", "designmatch", "highs", "ROI.plugin.highs", "GPCMlasso"); library(bincraftR); future::plan("${STRATEGY}", workers = ${NCPUS}, rscript_startup = quote(options(crayon.enabled = TRUE))); options(progressr.enable = TRUE); progressr::handlers(global = TRUE); progressr::handlers("cli"); foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = FALSE, force = TRUE, platform = "${PLATFORM}"))'
# - xvfb-run R -q -e 'options(crayon.enabled = TRUE, Ncpus = ${NCPUS}, future.globals.onReference = NULL); pkgs = c( "RcmdrPlugin.orloca", "RcmdrPlugin.PcaRobust", "RcmdrPlugin.RiskDemo", "RcmdrPlugin.RMTCJags", "RcmdrPlugin.ROC", "RcmdrPlugin.sos" , "RcmdrPlugin.survival", "RcmdrPlugin.TeachingDemos", "RcmdrPlugin.TeachStat", "RcmdrPlugin.temis", "RcmdrPlugin.UCA", "RcmdrPlugin.WorldFlora", "streamDAG", "stan4bart", "snplinkage", "saeHB.panel.beta", "rTwig", "rswipl", "RPointCloud", "rPDBapi", "rolog", "rmcfs", "rjags", "ResultModelManager", "RcppCWB", "RcmdrPlugin.WorldFlora", "RcmdrPlugin.UCA", "RcmdrPlugin.temis", "RcmdrPlugin.TeachStat", "RcmdrPlugin.TeachingDemos", "RcmdrPlugin.survival", "RcmdrPlugin.sos", "RcmdrPlugin.ROC", "RcmdrPlugin.RMTCJags", "RcmdrPlugin.RiskDemo", "RcmdrPlugin.PcaRobust", "RclusTool", "Rbeast", "rayrender", "quanteda.textmodels", "polmineR", "plotBart", "NlinTS", "ndtv", "overtureR", "mathml", "magickGUI", "lgpr", "KappaGUI", "historicalborrow", "GSODR", "GRIDCOPULA", "googleAnalyticsR", "fluidsynth", "EventDetectGUI", "evalITR", "EBcoBART", "deeptrafo", "dbarts", "CRE", "countSTAR", "bartMan", "bartCause", "altmeta", "EthSEQ", "dartR.spatial", "dartR.sim", "gwid", "Mega2R", "priorCON", "prior3D", "MCARtest", "designmatch", "highs", "ROI.plugin.highs", "GPCMlasso"); library(bincraftR); future::plan("${STRATEGY}", workers = ${NCPUS}, rscript_startup = quote(options(crayon.enabled = TRUE))); options(progressr.enable = TRUE); progressr::handlers(global = TRUE); progressr::handlers("cli"); foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = FALSE, force = TRUE, platform = "${PLATFORM}"))'
backend_options:
kubernetes:
### PROD-parallel