diff --git a/.woodpecker/build.yaml b/.woodpecker/build.yaml index 88b5855..0f1a4f4 100644 --- a/.woodpecker/build.yaml +++ b/.woodpecker/build.yaml @@ -8,30 +8,30 @@ depends_on: matrix: include: - - PLATFORM: redhat-9 - BLOCK: 20099:21169 - ARCH: arm64 - NCPUS: 2 - MEMORY: 29Gi - STRATEGY: multisession - - PLATFORM: redhat-8 - BLOCK: 20099:21169 - ARCH: arm64 - NCPUS: 2 - MEMORY: 29Gi - STRATEGY: multisession - - PLATFORM: ubuntu-2404 - BLOCK: 20099:21169 - ARCH: arm64 - NCPUS: 2 - MEMORY: 29Gi - STRATEGY: multisession - - PLATFORM: ubuntu-2204 - BLOCK: 20099:21169 - ARCH: arm64 - NCPUS: 2 - MEMORY: 29Gi - STRATEGY: multisession + # - PLATFORM: redhat-9 + # BLOCK: 20099:21169 + # ARCH: arm64 + # NCPUS: 2 + # MEMORY: 29Gi + # STRATEGY: multisession + # - PLATFORM: redhat-8 + # BLOCK: 20099:21169 + # ARCH: arm64 + # NCPUS: 2 + # MEMORY: 29Gi + # STRATEGY: multisession + # - PLATFORM: ubuntu-2404 + # BLOCK: 20099:21169 + # ARCH: arm64 + # NCPUS: 2 + # MEMORY: 29Gi + # STRATEGY: multisession + # - PLATFORM: ubuntu-2204 + # BLOCK: 20099:21169 + # ARCH: arm64 + # NCPUS: 2 + # MEMORY: 29Gi + # STRATEGY: multisession - PLATFORM: alpine-320 BLOCK: 7065:length(pkgs) ARCH: arm64 @@ -39,30 +39,30 @@ matrix: MEMORY: 29Gi STRATEGY: multisession ### AMD - # - PLATFORM: redhat-9 - # BLOCK: 1:length(pkgs) - # ARCH: amd64 - # NCPUS: 2 - # MEMORY: 29Gi - # STRATEGY: multisession - # - PLATFORM: redhat-8 - # BLOCK: 1:length(pkgs) - # ARCH: amd64 - # NCPUS: 2 - # MEMORY: 29Gi - # STRATEGY: multisession - # - PLATFORM: ubuntu-2404 - # BLOCK: 1:length(pkgs) - # ARCH: amd64 - # NCPUS: 2 - # MEMORY: 29Gi - # STRATEGY: multisession - # - PLATFORM: ubuntu-2204 - # BLOCK: 1:length(pkgs) - # ARCH: amd64 - # NCPUS: 2 - # MEMORY: 29Gi - # STRATEGY: multisession + - PLATFORM: redhat-9 + BLOCK: 1:length(pkgs) + ARCH: amd64 + NCPUS: 2 + MEMORY: 29Gi + STRATEGY: multisession + - PLATFORM: redhat-8 + BLOCK: 1:length(pkgs) + ARCH: amd64 + NCPUS: 2 + MEMORY: 29Gi + STRATEGY: multisession + - PLATFORM: ubuntu-2404 + BLOCK: 1:length(pkgs) + ARCH: amd64 + NCPUS: 2 + MEMORY: 29Gi + STRATEGY: multisession + - PLATFORM: ubuntu-2204 + BLOCK: 1:length(pkgs) + ARCH: amd64 + NCPUS: 2 + MEMORY: 29Gi + STRATEGY: multisession - PLATFORM: alpine-320 BLOCK: 1090:length(pkgs) ARCH: amd64 @@ -96,7 +96,7 @@ steps: # more complicated system dependencies which pak cannot resolve - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages # set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point - # - R -q -e 'options(crayon.enabled = TRUE, Ncpus = ${NCPUS}, future.globals.onReference = NULL); pkgs = tools::CRAN_package_db()[[1]]; pkgs = setdiff(pkgs[${BLOCK}], c( "RInno", "skedastic", "ROI.plugin.qpoases", "RPushbullet", "SimNPH", "SimDesign","simCAT", "SIAmodules", "shinytest2", "shinyIRT", "ShinyItemAnalysis", "shiny.benchmark", "scDIFtest", "RSP", "ROracle", "ROI.plugin.qpoases", "ROI.plugin.highs", "ROI.plugin.cplex", "RmecabKo", "rmarchingcubes", "RcppMeCab", "Rcplex", "ravetools", "Rbeast", "Rblpapi", "RcppEnsmallen", "qtkit", "priorCON", "prior3D", "PerFit", "outlierensembles", "nomnoml", "mxfda", "MultBiplotR", "mstDIF", "minic", "Mega2R", "mdsr", "MCARtest", "makepipe", "lordif", "KSgeneral", "kequate", "jstager", "jrt", "irtreliability", "irtQ", "irtpwr", "irtGUI", "irtawsi", "highs", "GRShiny", "gpuR", "GPCMlasso", "googletraffic", "giacR", "gamstransfer", "flps", "flow", "filters", "faoutlier", "EthSEQ", "equateIRT", "EnrichIntersect", "EFA.dimensions", "DFIT", "designmatch", "dartR.spatial", "dartR.sexlinked", "dartR.sim", "dartR.popgen", "dartR.captive", "dartR.base","dartR", "D3mirt", "ctsem", "ctgdist", "CoTiMA", "ConvertPar", "cncaGUI", "clrng", "bscui", "BifactorIndicesCalculator", "autoFC", "airt")); library(bincraftR); future::plan("${STRATEGY}", workers = ${NCPUS}, rscript_startup = quote(options(crayon.enabled = TRUE))); options(progressr.enable = TRUE); progressr::handlers('cli'); progressr::handlers(global = TRUE); pkgs = foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = FALSE, force = TRUE, platform = "${PLATFORM}"))' + - R -q -e 'options(crayon.enabled = TRUE, Ncpus = ${NCPUS}, future.globals.onReference = NULL); pkgs = tools::CRAN_package_db()[[1]]; pkgs = setdiff(pkgs[${BLOCK}], c("RInno", "skedastic", "RPushbullet", "SimNPH", "SimDesign","simCAT", "SIAmodules", "shinytest2", "shinyIRT", "ShinyItemAnalysis", "shiny.benchmark", "scDIFtest", "RSP", "ROracle", "ROI.plugin.qpoases", "ROI.plugin.cplex", "RmecabKo", "rmarchingcubes", "RcppMeCab", "Rcplex", "ravetools", "Rbeast", "Rblpapi", "RcppEnsmallen", "qtkit", "priorCON", "prior3D", "PerFit", "outlierensembles", "nomnoml", "mxfda", "MultBiplotR", "mstDIF", "mdsr", "makepipe", "lordif", "KSgeneral", "kequate", "jstager", "jrt", "irtreliability", "irtQ", "irtpwr", "irtawsi", "GRShiny", "gpuR", "googletraffic", "giacR", "gamstransfer", "flps", "flow", "filters", "faoutlier", "equateIRT", "EnrichIntersect", "EFA.dimensions", "DFIT", "D3mirt", "ctgdist", "CoTiMA", "ConvertPar", "clrng", "bscui", "BifactorIndicesCalculator", "autoFC", "airt")); library(bincraftR); future::plan("${STRATEGY}", workers = ${NCPUS}, rscript_startup = quote(options(crayon.enabled = TRUE))); options(progressr.enable = TRUE); progressr::handlers('cli'); progressr::handlers(global = TRUE); pkgs = foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = FALSE, force = TRUE, platform = "${PLATFORM}"))' ### Manual pkg builds # webshot2, tabledown, TestAnaAPP, trekcolors, Spectran, SimNPH, RPushbullet, SimDesign, simCAT, SIAmodules, shinytest2, ShinyItemAnalysis, shinyIRT, shiny.benchmark, scDIFtest, RSP, qtkit, PROsetta, prettifyAddins, PerFit, outlierensembles, nomnoml, mxfda, MultBiplotR, mstDIF, mdsr, makepipe, lordif, kequate, jstager, jrt, irtreliability, irtQ, irtpwr, irtGUI, irtawsi, GRShiny, GPCMlasso, googletraffic, giacR, flps, flow, faoutlier, equateIRT, EnrichIntersect, EFA.dimensions, DFIT, D3mirt, ctgdist, CoTiMA, ConvertPar, bscui, BifactorIndicesCalculator, autoFC, airt: wait for https://github.com/rstudio/r-system-requirements/pull/178 # RInno: Windows-only @@ -128,7 +128,7 @@ steps: # tfrmtbuilder -> V8 (alpine) # Rcmdr (alpine) # readstata13 (alpine) - - xvfb-run R -q -e 'options(crayon.enabled = TRUE, Ncpus = ${NCPUS}, future.globals.onReference = NULL); pkgs = c( "RcmdrPlugin.orloca", "RcmdrPlugin.PcaRobust", "RcmdrPlugin.RiskDemo", "RcmdrPlugin.RMTCJags", "RcmdrPlugin.ROC", "RcmdrPlugin.sos" , "RcmdrPlugin.survival", "RcmdrPlugin.TeachingDemos", "RcmdrPlugin.TeachStat", "RcmdrPlugin.temis", "RcmdrPlugin.UCA", "RcmdrPlugin.WorldFlora", "streamDAG", "stan4bart", "snplinkage", "saeHB.panel.beta", "rTwig", "rswipl", "RPointCloud", "rPDBapi", "rolog", "rmcfs", "rjags", "ResultModelManager", "RcppCWB", "RcmdrPlugin.WorldFlora", "RcmdrPlugin.UCA", "RcmdrPlugin.temis", "RcmdrPlugin.TeachStat", "RcmdrPlugin.TeachingDemos", "RcmdrPlugin.survival", "RcmdrPlugin.sos", "RcmdrPlugin.ROC", "RcmdrPlugin.RMTCJags", "RcmdrPlugin.RiskDemo", "RcmdrPlugin.PcaRobust", "RclusTool", "Rbeast", "rayrender", "quanteda.textmodels", "polmineR", "plotBart", "NlinTS", "ndtv", "overtureR", "mathml", "magickGUI", "lgpr", "KappaGUI", "historicalborrow", "GSODR", "GRIDCOPULA", "googleAnalyticsR", "fluidsynth", "EventDetectGUI", "evalITR", "EBcoBART", "deeptrafo", "dbarts", "CRE", "countSTAR", "bartMan", "bartCause", "altmeta", "EthSEQ", "dartR.spatial", "dartR.sim", "gwid", "Mega2R", "priorCON", "prior3D", "MCARtest", "designmatch", "highs", "ROI.plugin.highs", "GPCMlasso"); library(bincraftR); future::plan("${STRATEGY}", workers = ${NCPUS}, rscript_startup = quote(options(crayon.enabled = TRUE))); options(progressr.enable = TRUE); progressr::handlers(global = TRUE); progressr::handlers("cli"); foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = FALSE, force = TRUE, platform = "${PLATFORM}"))' + # - xvfb-run R -q -e 'options(crayon.enabled = TRUE, Ncpus = ${NCPUS}, future.globals.onReference = NULL); pkgs = c( "RcmdrPlugin.orloca", "RcmdrPlugin.PcaRobust", "RcmdrPlugin.RiskDemo", "RcmdrPlugin.RMTCJags", "RcmdrPlugin.ROC", "RcmdrPlugin.sos" , "RcmdrPlugin.survival", "RcmdrPlugin.TeachingDemos", "RcmdrPlugin.TeachStat", "RcmdrPlugin.temis", "RcmdrPlugin.UCA", "RcmdrPlugin.WorldFlora", "streamDAG", "stan4bart", "snplinkage", "saeHB.panel.beta", "rTwig", "rswipl", "RPointCloud", "rPDBapi", "rolog", "rmcfs", "rjags", "ResultModelManager", "RcppCWB", "RcmdrPlugin.WorldFlora", "RcmdrPlugin.UCA", "RcmdrPlugin.temis", "RcmdrPlugin.TeachStat", "RcmdrPlugin.TeachingDemos", "RcmdrPlugin.survival", "RcmdrPlugin.sos", "RcmdrPlugin.ROC", "RcmdrPlugin.RMTCJags", "RcmdrPlugin.RiskDemo", "RcmdrPlugin.PcaRobust", "RclusTool", "Rbeast", "rayrender", "quanteda.textmodels", "polmineR", "plotBart", "NlinTS", "ndtv", "overtureR", "mathml", "magickGUI", "lgpr", "KappaGUI", "historicalborrow", "GSODR", "GRIDCOPULA", "googleAnalyticsR", "fluidsynth", "EventDetectGUI", "evalITR", "EBcoBART", "deeptrafo", "dbarts", "CRE", "countSTAR", "bartMan", "bartCause", "altmeta", "EthSEQ", "dartR.spatial", "dartR.sim", "gwid", "Mega2R", "priorCON", "prior3D", "MCARtest", "designmatch", "highs", "ROI.plugin.highs", "GPCMlasso"); library(bincraftR); future::plan("${STRATEGY}", workers = ${NCPUS}, rscript_startup = quote(options(crayon.enabled = TRUE))); options(progressr.enable = TRUE); progressr::handlers(global = TRUE); progressr::handlers("cli"); foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = FALSE, force = TRUE, platform = "${PLATFORM}"))' backend_options: kubernetes: ### PROD-parallel