pat-s
a2a6a4f7eflibR.so links against liblzma, but the Alpine package never declared a
dependency on it. The list carried `# - liblzma-dev`, the Debian name,
which does not exist on Alpine and so had been commented out rather than
translated. The result is a package that installs cleanly and then fails
on every invocation:
Error loading shared library liblzma.so.5: No such file or directory
(needed by /opt/R/4.6.1/lib/R/lib/libR.so)
Error relocating /opt/R/4.6.1/lib/R/lib/libR.so: lzma_code: symbol not found
Replace it with xz-dev, the Alpine equivalent, which pulls xz-libs, the
package that owns liblzma.so.5. Keep the -dev variant to match every other
entry in the list, which are -dev so that CRAN packages can be installed
from source on the target.
Verified by repackaging the currently published r-4.6.1_1_aarch64.apk with
this dependency list and installing it into a clean alpine:3.22 container:
R now starts with no manually added packages, where before it did not.
77 lines
1.6 KiB
Shell
77 lines
1.6 KiB
Shell
#!/bin/bash
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if [[ ! -d /tmp/output/${OS_IDENTIFIER} ]]; then
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mkdir -p "/tmp/output/${OS_IDENTIFIER}"
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fi
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# R 3.x requires PCRE1. On Ubuntu 24, R 3.x also requires PCRE2 for Pango support.
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pcre_libs='- pcre2-dev'
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if [[ "${R_VERSION}" =~ ^3 ]]; then
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pcre_libs='- pcre2-dev
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- libpcre3-dev'
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fi
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deflate_libs='# - libdeflate-dev'
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if grep -q '^LIBS *=.*[-]ldeflate' ${R_INSTALL_PATH}/lib/R/etc/Makeconf; then
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deflate_libs='- libdeflate-dev'
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fi
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cat <<EOF > /tmp/nfpm.yml
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name: r-${R_VERSION}
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version: 1
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version_schema: none
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section: universe/math
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priority: optional
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arch: $(arch)
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maintainer: Posit Software, PBC <https://github.com/rstudio/r-builds>
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description: |
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GNU R statistical computation and graphics system
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vendor: Posit Software, PBC
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homepage: https://www.r-project.org
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license: GPL-2
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depends:
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- g++
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- gcc
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- gfortran
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- libbz2
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# - libc6
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- cairo
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- libcurl
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${deflate_libs}
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# - libglib2.0-0t64
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# - libgomp1
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- icu-dev
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- jpeg-dev
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# liblzma-dev is the Debian name and does not exist on Alpine; xz-dev is the
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# equivalent and pulls xz-libs, which owns liblzma.so.5. Without it libR.so
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# cannot relocate its lzma symbols and R fails to start at all.
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- xz-dev
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- openblas-dev
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- pango
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# - libpangocairo-1.0-0
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- libpaper
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${pcre_libs}
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- libpng-dev
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- readline-dev
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- tcl
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- tiff-dev
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- libtirpc-dev
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- tk
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# - libx11-6
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# - libxt6t64
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- make
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# - ucf
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- unzip
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- zip
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- zlib-ng-dev
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contents:
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- src: ${R_INSTALL_PATH}
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dst: ${R_INSTALL_PATH}
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EOF
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nfpm package \
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-f /tmp/nfpm.yml \
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-p apk \
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-t "/tmp/output/${OS_IDENTIFIER}"
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export PKG_FILE=$(ls /tmp/output/${OS_IDENTIFIER}/r-${R_VERSION}*.apk | head -1)
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