chore: patch rhel10 build files
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6d332ec859
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2 changed files with 24 additions and 67 deletions
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@ -1,4 +1,4 @@
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FROM almalinux:10
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FROM rockylinux/rockylinux:10
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ENV OS_IDENTIFIER rhel-10
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ENV OS_IDENTIFIER rhel-10
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@ -59,7 +59,9 @@ RUN curl -LO "https://github.com/goreleaser/nfpm/releases/download/v2.18.1/nfpm_
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RUN chmod 0777 /opt
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RUN chmod 0777 /opt
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# Configure flags for RHEL 9 that don't use the defaults in build.sh
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# Configure flags for RHEL 10 that don't use the defaults in build.sh
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# Since RHEL 9 with the R 4.3.0 release, RHEL/Fedora now uses FlexiBLAS as the
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# default BLAS/LAPACK, which provides a native BLAS switching mechanism and matches EPEL.
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ENV CONFIGURE_OPTIONS="\
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ENV CONFIGURE_OPTIONS="\
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--enable-R-shlib \
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--enable-R-shlib \
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--with-tcltk \
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--with-tcltk \
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@ -68,26 +70,25 @@ ENV CONFIGURE_OPTIONS="\
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--with-system-valgrind-headers \
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--with-system-valgrind-headers \
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--with-tcl-config=/usr/lib64/tclConfig.sh \
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--with-tcl-config=/usr/lib64/tclConfig.sh \
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--with-tk-config=/usr/lib64/tkConfig.sh \
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--with-tk-config=/usr/lib64/tkConfig.sh \
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--enable-prebuilt-html"
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--enable-prebuilt-html \
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--with-blas=flexiblas \
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--with-lapack=flexiblas"
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# RHEL 9 doesn't have the inconsolata font, so override the defaults.
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# RHEL 10 doesn't have the inconsolata font, so override the defaults.
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# This may be removed if RHEL ever adds the texlive-inconsolata package from Fedora.
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# This may be removed if RHEL ever adds the texlive-inconsolata package from Fedora.
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# Or check `dnf provides '*/inconsolata.sty'` for a package that provides it.
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# Or check `dnf provides '*/inconsolata.sty'` for a package that provides it.
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# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Making-the-manuals
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# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Making-the-manuals
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ENV R_RD4PDF="times,hyper"
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ENV R_RD4PDF="times,hyper"
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# Make sure that patching Java does not break R.
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# Make sure that patching Java does not break R.
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# R's default JAVA_HOME path includes the exact Java version on CentOS/RHEL, which
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# R's default JAVA_HOME path includes the exact Java version on RHEL, which
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# requires users to run `R CMD javareconf` even on minor/patch upgrades. Use the
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# requires users to run `R CMD javareconf` even on minor/patch upgrades. Use the
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# major version symlink to avoid this.
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# major version symlink to avoid this.
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# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Java-support
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# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Java-support
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# https://solutions.posit.co/envs-pkgs/using-rjava/
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# https://solutions.posit.co/envs-pkgs/using-rjava/
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ENV JAVA_HOME=/usr/lib/jvm/jre-11-openjdk
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ENV JAVA_HOME=/usr/lib/jvm/jre-21-openjdk
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# R 3.x requires PCRE2 for Pango support on RHEL 9
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COPY package.rhel-10 /package.sh
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ENV INCLUDE_PCRE2_IN_R_3 yes
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COPY package.rhel-9 /package.sh
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COPY build.sh .
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COPY build.sh .
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COPY patches /patches
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COPY patches /patches
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ENTRYPOINT ./build.sh
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ENTRYPOINT ./build.sh
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@ -4,67 +4,22 @@ if [[ ! -d /tmp/output/${OS_IDENTIFIER} ]]; then
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mkdir -p "/tmp/output/${OS_IDENTIFIER}"
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mkdir -p "/tmp/output/${OS_IDENTIFIER}"
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fi
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fi
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# R 3.x requires PCRE1. On RHEL 9, R 3.x also requires PCRE2 for Pango support.
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# R 4.5.0 and later require libzstd (with headers to link against libR)
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pcre_libs='- pcre2-devel'
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zstd_libs='# - libzstd-devel'
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if [[ "${R_VERSION}" =~ ^3 ]]; then
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if grep -q '^LIBS *=.*[-]lzstd' ${R_INSTALL_PATH}/lib/R/etc/Makeconf; then
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pcre_libs='- pcre2-devel
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zstd_libs='- libzstd-devel'
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- pcre-devel'
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fi
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fi
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# On RHEL and SUSE, we link R against the internal shared BLAS to make the
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# Create postremove script to remove empty directories, as nFPM doesn't include them in the RPM files.
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# R binaries more portable and allow users to switch BLAS implementations without
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cat <<EOF >> /after-remove.sh
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# having to recompile R. We default to OpenBLAS, but users may prefer other implementations.
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if [ -d ${R_INSTALL_PATH} ]; then
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#
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rm -r ${R_INSTALL_PATH}
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# Binary packages built against the shared BLAS are also more portable and may be used
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# with the default R distributed by RHEL/SUSE, or other R installations using
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# shared BLAS and configured with a different BLAS (such as Microsoft R Open with MKL).
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# This is especially important for Posit Package Manager's binary packages.
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#
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# However, EPEL 9's R now links externally against FlexiBLAS, which provides a
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# native BLAS switching mechanism for Fedora/RHEL. Starting with R 4.3.0, we also
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# link to external FlexiBLAS for compatibility.
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# https://fedoraproject.org/wiki/Changes/FlexiBLAS_as_BLAS/LAPACK_manager
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#
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# On Ubuntu/Debian, we link R against the external BLAS instead (--with-blas/--with-lapack),
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# as those distributions use the alternatives system to swap BLAS libraries at runtime.
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# The default R distributions on Ubuntu/Debian use the external BLAS, so we do as well
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# for portability.
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#
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# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Shared-BLAS
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if [[ "$("${R_INSTALL_PATH}/bin/R" CMD config BLAS_LIBS)" == "-lflexiblas" ]]; then
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blas_lib='flexiblas-devel'
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# Create postremove script to remove empty directories, as nFPM doesn't include them in the RPM files.
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cat <<EOF >> /after-remove.sh
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if [ -d ${R_INSTALL_PATH} ]; then
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rm -r ${R_INSTALL_PATH}
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fi
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EOF
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scripts="scripts:
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postremove: /after-remove.sh
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"
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else
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blas_lib='openblas-devel'
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# Create post-install script required for OpenBLAS.
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cat <<EOF >> /post-install.sh
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mv ${R_INSTALL_PATH}/lib/R/lib/libRblas.so ${R_INSTALL_PATH}/lib/R/lib/libRblas.so.keep
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ln -s /usr/lib64/libopenblasp.so ${R_INSTALL_PATH}/lib/R/lib/libRblas.so
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EOF
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# Create after-remove script to remove internal BLAS, which won't be cleaned up automatically.
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cat <<EOF >> /after-remove.sh
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if [ -d ${R_INSTALL_PATH} ]; then
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rm -r ${R_INSTALL_PATH}
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fi
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EOF
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scripts="scripts:
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postinstall: /post-install.sh
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postremove: /after-remove.sh
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"
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fi
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fi
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EOF
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scripts="scripts:
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postremove: /after-remove.sh
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"
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if [ "$(arch)" == "aarch64" ]; then echo arm64; else echo amd64; fi > /tmp/arch
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if [ "$(arch)" == "aarch64" ]; then echo arm64; else echo amd64; fi > /tmp/arch
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@ -91,10 +46,11 @@ depends:
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- libtiff
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- libtiff
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- libXmu
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- libXmu
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- libXt
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- libXt
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${zstd_libs}
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- make
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- make
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- ${blas_lib}
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- flexiblas-devel
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- pango
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- pango
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${pcre_libs}
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- pcre2-devel
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- tcl
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- tcl
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- tk
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- tk
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- unzip
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- unzip
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