chore: patch rhel10 build files
All checks were successful
ci/crow/manual/build/13 Pipeline was successful
ci/crow/manual/build/11 Pipeline was successful
ci/crow/manual/build/10 Pipeline was successful
ci/crow/manual/build/1 Pipeline was successful
ci/crow/manual/build/9 Pipeline was successful
ci/crow/manual/build/6 Pipeline was successful
ci/crow/manual/build/12 Pipeline was successful
ci/crow/manual/build/14 Pipeline was successful
ci/crow/manual/build/7 Pipeline was successful
ci/crow/manual/build/2 Pipeline was successful
ci/crow/manual/build/5 Pipeline was successful
ci/crow/manual/build/8 Pipeline was successful
ci/crow/manual/build/4 Pipeline was successful
ci/crow/manual/build/3 Pipeline was successful
All checks were successful
ci/crow/manual/build/13 Pipeline was successful
ci/crow/manual/build/11 Pipeline was successful
ci/crow/manual/build/10 Pipeline was successful
ci/crow/manual/build/1 Pipeline was successful
ci/crow/manual/build/9 Pipeline was successful
ci/crow/manual/build/6 Pipeline was successful
ci/crow/manual/build/12 Pipeline was successful
ci/crow/manual/build/14 Pipeline was successful
ci/crow/manual/build/7 Pipeline was successful
ci/crow/manual/build/2 Pipeline was successful
ci/crow/manual/build/5 Pipeline was successful
ci/crow/manual/build/8 Pipeline was successful
ci/crow/manual/build/4 Pipeline was successful
ci/crow/manual/build/3 Pipeline was successful
This commit is contained in:
parent
6d332ec859
commit
f869bd86ed
2 changed files with 24 additions and 67 deletions
|
|
@ -1,4 +1,4 @@
|
|||
FROM almalinux:10
|
||||
FROM rockylinux/rockylinux:10
|
||||
|
||||
ENV OS_IDENTIFIER rhel-10
|
||||
|
||||
|
|
@ -59,7 +59,9 @@ RUN curl -LO "https://github.com/goreleaser/nfpm/releases/download/v2.18.1/nfpm_
|
|||
|
||||
RUN chmod 0777 /opt
|
||||
|
||||
# Configure flags for RHEL 9 that don't use the defaults in build.sh
|
||||
# Configure flags for RHEL 10 that don't use the defaults in build.sh
|
||||
# Since RHEL 9 with the R 4.3.0 release, RHEL/Fedora now uses FlexiBLAS as the
|
||||
# default BLAS/LAPACK, which provides a native BLAS switching mechanism and matches EPEL.
|
||||
ENV CONFIGURE_OPTIONS="\
|
||||
--enable-R-shlib \
|
||||
--with-tcltk \
|
||||
|
|
@ -68,26 +70,25 @@ ENV CONFIGURE_OPTIONS="\
|
|||
--with-system-valgrind-headers \
|
||||
--with-tcl-config=/usr/lib64/tclConfig.sh \
|
||||
--with-tk-config=/usr/lib64/tkConfig.sh \
|
||||
--enable-prebuilt-html"
|
||||
--enable-prebuilt-html \
|
||||
--with-blas=flexiblas \
|
||||
--with-lapack=flexiblas"
|
||||
|
||||
# RHEL 9 doesn't have the inconsolata font, so override the defaults.
|
||||
# RHEL 10 doesn't have the inconsolata font, so override the defaults.
|
||||
# This may be removed if RHEL ever adds the texlive-inconsolata package from Fedora.
|
||||
# Or check `dnf provides '*/inconsolata.sty'` for a package that provides it.
|
||||
# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Making-the-manuals
|
||||
ENV R_RD4PDF="times,hyper"
|
||||
|
||||
# Make sure that patching Java does not break R.
|
||||
# R's default JAVA_HOME path includes the exact Java version on CentOS/RHEL, which
|
||||
# R's default JAVA_HOME path includes the exact Java version on RHEL, which
|
||||
# requires users to run `R CMD javareconf` even on minor/patch upgrades. Use the
|
||||
# major version symlink to avoid this.
|
||||
# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Java-support
|
||||
# https://solutions.posit.co/envs-pkgs/using-rjava/
|
||||
ENV JAVA_HOME=/usr/lib/jvm/jre-11-openjdk
|
||||
ENV JAVA_HOME=/usr/lib/jvm/jre-21-openjdk
|
||||
|
||||
# R 3.x requires PCRE2 for Pango support on RHEL 9
|
||||
ENV INCLUDE_PCRE2_IN_R_3 yes
|
||||
|
||||
COPY package.rhel-9 /package.sh
|
||||
COPY package.rhel-10 /package.sh
|
||||
COPY build.sh .
|
||||
COPY patches /patches
|
||||
ENTRYPOINT ./build.sh
|
||||
|
|
|
|||
|
|
@ -4,67 +4,22 @@ if [[ ! -d /tmp/output/${OS_IDENTIFIER} ]]; then
|
|||
mkdir -p "/tmp/output/${OS_IDENTIFIER}"
|
||||
fi
|
||||
|
||||
# R 3.x requires PCRE1. On RHEL 9, R 3.x also requires PCRE2 for Pango support.
|
||||
pcre_libs='- pcre2-devel'
|
||||
if [[ "${R_VERSION}" =~ ^3 ]]; then
|
||||
pcre_libs='- pcre2-devel
|
||||
- pcre-devel'
|
||||
# R 4.5.0 and later require libzstd (with headers to link against libR)
|
||||
zstd_libs='# - libzstd-devel'
|
||||
if grep -q '^LIBS *=.*[-]lzstd' ${R_INSTALL_PATH}/lib/R/etc/Makeconf; then
|
||||
zstd_libs='- libzstd-devel'
|
||||
fi
|
||||
|
||||
# On RHEL and SUSE, we link R against the internal shared BLAS to make the
|
||||
# R binaries more portable and allow users to switch BLAS implementations without
|
||||
# having to recompile R. We default to OpenBLAS, but users may prefer other implementations.
|
||||
#
|
||||
# Binary packages built against the shared BLAS are also more portable and may be used
|
||||
# with the default R distributed by RHEL/SUSE, or other R installations using
|
||||
# shared BLAS and configured with a different BLAS (such as Microsoft R Open with MKL).
|
||||
# This is especially important for Posit Package Manager's binary packages.
|
||||
#
|
||||
# However, EPEL 9's R now links externally against FlexiBLAS, which provides a
|
||||
# native BLAS switching mechanism for Fedora/RHEL. Starting with R 4.3.0, we also
|
||||
# link to external FlexiBLAS for compatibility.
|
||||
# https://fedoraproject.org/wiki/Changes/FlexiBLAS_as_BLAS/LAPACK_manager
|
||||
#
|
||||
# On Ubuntu/Debian, we link R against the external BLAS instead (--with-blas/--with-lapack),
|
||||
# as those distributions use the alternatives system to swap BLAS libraries at runtime.
|
||||
# The default R distributions on Ubuntu/Debian use the external BLAS, so we do as well
|
||||
# for portability.
|
||||
#
|
||||
# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Shared-BLAS
|
||||
if [[ "$("${R_INSTALL_PATH}/bin/R" CMD config BLAS_LIBS)" == "-lflexiblas" ]]; then
|
||||
blas_lib='flexiblas-devel'
|
||||
|
||||
# Create postremove script to remove empty directories, as nFPM doesn't include them in the RPM files.
|
||||
cat <<EOF >> /after-remove.sh
|
||||
if [ -d ${R_INSTALL_PATH} ]; then
|
||||
rm -r ${R_INSTALL_PATH}
|
||||
fi
|
||||
EOF
|
||||
|
||||
scripts="scripts:
|
||||
postremove: /after-remove.sh
|
||||
"
|
||||
else
|
||||
blas_lib='openblas-devel'
|
||||
|
||||
# Create post-install script required for OpenBLAS.
|
||||
cat <<EOF >> /post-install.sh
|
||||
mv ${R_INSTALL_PATH}/lib/R/lib/libRblas.so ${R_INSTALL_PATH}/lib/R/lib/libRblas.so.keep
|
||||
ln -s /usr/lib64/libopenblasp.so ${R_INSTALL_PATH}/lib/R/lib/libRblas.so
|
||||
EOF
|
||||
|
||||
# Create after-remove script to remove internal BLAS, which won't be cleaned up automatically.
|
||||
cat <<EOF >> /after-remove.sh
|
||||
if [ -d ${R_INSTALL_PATH} ]; then
|
||||
rm -r ${R_INSTALL_PATH}
|
||||
fi
|
||||
EOF
|
||||
|
||||
scripts="scripts:
|
||||
postinstall: /post-install.sh
|
||||
postremove: /after-remove.sh
|
||||
"
|
||||
# Create postremove script to remove empty directories, as nFPM doesn't include them in the RPM files.
|
||||
cat <<EOF >> /after-remove.sh
|
||||
if [ -d ${R_INSTALL_PATH} ]; then
|
||||
rm -r ${R_INSTALL_PATH}
|
||||
fi
|
||||
EOF
|
||||
|
||||
scripts="scripts:
|
||||
postremove: /after-remove.sh
|
||||
"
|
||||
|
||||
if [ "$(arch)" == "aarch64" ]; then echo arm64; else echo amd64; fi > /tmp/arch
|
||||
|
||||
|
|
@ -91,10 +46,11 @@ depends:
|
|||
- libtiff
|
||||
- libXmu
|
||||
- libXt
|
||||
${zstd_libs}
|
||||
- make
|
||||
- ${blas_lib}
|
||||
- flexiblas-devel
|
||||
- pango
|
||||
${pcre_libs}
|
||||
- pcre2-devel
|
||||
- tcl
|
||||
- tk
|
||||
- unzip
|
||||
|
|
|
|||
Loading…
Reference in a new issue