Add R builds for openSUSE 15.4/SLES 15 SP4

This commit is contained in:
Greg Lin 2022-08-10 13:56:35 -05:00
commit f8392bdea8
9 changed files with 233 additions and 5 deletions

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@ -1,4 +1,4 @@
PLATFORMS := ubuntu-1804 ubuntu-2004 ubuntu-2204 debian-10 debian-11 centos-7 centos-8 rhel-9 opensuse-153
PLATFORMS := ubuntu-1804 ubuntu-2004 ubuntu-2204 debian-10 debian-11 centos-7 centos-8 rhel-9 opensuse-153 opensuse-154
SLS_BINARY ?= ./node_modules/serverless/bin/serverless
deps:

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@ -23,8 +23,8 @@ R binaries are built for the following Linux operating systems:
- Debian 10, 11
- CentOS 7
- Red Hat Enterprise Linux 7, 8, 9
- openSUSE 15.3
- SUSE Linux Enterprise 15 SP3
- openSUSE 15.3, 15.4
- SUSE Linux Enterprise 15 SP3, 15 SP4
Operating systems are supported until their vendor end-of-support dates, which
can be found on the [RStudio Platform Support](https://www.rstudio.com/about/platform-support/)
@ -139,6 +139,9 @@ Download the rpm package:
```bash
# openSUSE 15.3 / SLES 15 SP3
wget https://cdn.rstudio.com/r/opensuse-153/pkgs/R-${R_VERSION}-1-1.x86_64.rpm
# openSUSE 15.4 / SLES 15 SP4
wget https://cdn.rstudio.com/r/opensuse-154/pkgs/R-${R_VERSION}-1-1.x86_64.rpm
```
Then install the package:

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@ -0,0 +1,101 @@
FROM opensuse/leap:15.4
ENV OS_IDENTIFIER opensuse-154
# Most of these packages, and also the configure options that follow were determined
# by reviewing "R-base.spec" from the following OpenSUSE RPM:
# https://download.opensuse.org/repositories/devel:/languages:/R:/released/openSUSE_Leap_42.3/src/R-base-3.5.3-103.1.src.rpm
RUN zypper --non-interactive update
RUN zypper --non-interactive --gpg-auto-import-keys -n install \
bzip2 \
cairo-devel \
curl \
fdupes \
gcc \
gcc-c++ \
gcc-fortran \
glib2-devel \
glibc-locale \
help2man \
# Like openSUSE/SLES 15.3, SUSE 15.4 ships with both ICU 65 (libicu-devel) and
# ICU 69 (icu.691-devel). Prefer ICU 69 because the devel packages can't coexist, and
# zypper resolves libicu-devel to icu.691-devel when installing RPMs.
icu.691-devel \
java-11-openjdk-devel \
libX11-devel \
libXScrnSaver-devel \
libXmu-devel \
libXt-devel \
libbz2-devel \
libcurl-devel \
libjpeg-devel \
libpng-devel \
libtiff-devel \
make \
pango-devel \
pcre-devel \
pcre2-devel \
perl \
perl-macros \
readline-devel \
rpm-build \
ruby \
ruby-devel \
shadow \
tcl-devel \
texinfo \
texlive-ae \
texlive-bibtex \
texlive-cm-super \
texlive-dvips \
texlive-fancyvrb \
texlive-helvetic \
texlive-inconsolata \
texlive-latex \
texlive-makeindex \
texlive-metafont \
texlive-psnfss \
texlive-tex \
texlive-times \
tk-devel \
unzip \
wget \
xdg-utils \
xorg-x11-devel \
xz-devel \
zip \
zlib-devel \
&& zypper clean
# Install AWS CLI
RUN curl "https://awscli.amazonaws.com/awscli-exe-linux-x86_64.zip" -o "awscliv2.zip" && \
unzip awscliv2.zip && \
./aws/install && \
rm -rf aws awscliv2.zip
RUN gem install fpm && \
ln -s /usr/bin/fpm.ruby2.5 /usr/local/bin/fpm
RUN chmod 0777 /opt
# Configure flags for SUSE that don't use the defaults in build.sh
ENV CONFIGURE_OPTIONS="\
--enable-R-shlib \
--with-tcltk \
--with-x \
--enable-memory-profiling \
--with-tcl-config=/usr/lib64/tclConfig.sh \
--with-tk-config=/usr/lib64/tkConfig.sh"
# Make sure that patching Java does not break R.
# On SUSE, the default JAVA_HOME path always uses the major Java version only,
# but the JDK path is chosen by default. We change this to the JRE path to
# support users who only want to install the JRE (non-devel) package.
# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Java-support
# https://solutions.rstudio.com/r/using-rjava/
ENV JAVA_HOME=/usr/lib64/jvm/jre-11-openjdk
COPY package.opensuse-154 /package.sh
COPY build.sh .
ENTRYPOINT ./build.sh

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@ -98,3 +98,14 @@ services:
image: r-builds:opensuse-153
volumes:
- ./integration/tmp:/tmp/output
opensuse-154:
command: ./build.sh
environment:
- R_VERSION=${R_VERSION}
- LOCAL_STORE=/tmp/output
build:
context: .
dockerfile: Dockerfile.opensuse-154
image: r-builds:opensuse-154
volumes:
- ./integration/tmp:/tmp/output

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@ -0,0 +1,87 @@
#!/bin/bash
if [[ ! -d /tmp/output/opensuse-154 ]]; then
mkdir -p /tmp/output/opensuse-154
fi
# R 3.x requires PCRE1
pcre_lib='pcre2-devel'
if [[ "${R_VERSION}" =~ ^3 ]]; then
pcre_lib='pcre-devel'
fi
# Create post-install script required for OpenBLAS.
#
# On RHEL and SUSE, we link R against the internal shared BLAS to make the
# R binaries more portable and allow users to switch BLAS implementations without
# having to recompile R. We default to OpenBLAS, but users may prefer other implementations.
#
# Binary packages built against the shared BLAS are also more portable and may be used
# with the default R distributed by RHEL/SUSE, or other R installations using
# shared BLAS and configured with a different BLAS (such as Microsoft R Open with MKL).
# This is especially important for RSPM's binary packages.
#
# On Ubuntu/Debian, we link R against the external BLAS instead (--with-blas/--with-lapack),
# as those distributions use the alternatives system to swap BLAS libraries at runtime.
# The default R distributions on Ubuntu/Debian use the external BLAS, so we do as well
# for portability.
#
# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Shared-BLAS
cat <<EOF >> /post-install.sh
mv /opt/R/${R_VERSION}/lib/R/lib/libRblas.so /opt/R/${R_VERSION}/lib/R/lib/libRblas.so.keep
ln -s /usr/lib64/libopenblas.so /opt/R/${R_VERSION}/lib/R/lib/libRblas.so
EOF
# Create after-remove script to remove internal BLAS, which won't be cleaned up automatically.
cat <<EOF >> /after-remove.sh
if [ -d /opt/R/${R_VERSION} ]; then
rm -r /opt/R/${R_VERSION}
fi
EOF
fpm \
-s dir \
-t rpm \
-v 1 \
-n "R-${R_VERSION}" \
--vendor "RStudio, PBC" \
--url "http://www.r-project.org/" \
--description "GNU R statistical computation and graphics system" \
--maintainer "RStudio, PBC <https://github.com/rstudio/r-builds>" \
--license "GPLv2" \
--after-install /post-install.sh \
--after-remove /after-remove.sh \
-p /tmp/output/opensuse-154/ \
-d fontconfig \
-d gcc \
-d gcc-c++ \
-d gcc-fortran \
-d glibc-locale \
-d gzip \
-d icu.691-devel \
-d libbz2-devel \
-d libcairo2 \
-d libcurl-devel \
-d libfreetype6 \
-d libgomp1 \
-d libjpeg62 \
-d libopenblas_pthreads-devel \
-d libpango-1_0-0 \
-d libreadline7 \
-d libtiff5 \
-d make \
-d ${pcre_lib} \
-d tar \
-d tcl \
-d tk \
-d unzip \
-d which \
-d xorg-x11 \
-d xorg-x11-fonts-100dpi \
-d xorg-x11-fonts-75dpi \
-d xz-devel \
-d zip \
-d zlib-devel \
"/opt/R/${R_VERSION}"
export PKG_FILE=$(ls /tmp/output/opensuse-154/R-${R_VERSION}*.rpm | head -1)

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@ -194,7 +194,9 @@ download_url () {
echo "${CDN_URL}/opensuse-42/pkgs/${name}"
;;
"LEAP15" | "SLES15")
if [ "${ver}" -ge 153 ]; then
if [ "${ver}" -ge 154 ]; then
echo "${CDN_URL}/opensuse-154/pkgs/${name}"
elif [ "${ver}" -ge 153 ]; then
echo "${CDN_URL}/opensuse-153/pkgs/${name}"
elif [ "${ver}" -eq 152 ]; then
echo "${CDN_URL}/opensuse-152/pkgs/${name}"

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@ -256,6 +256,20 @@ rBuildsBatchJobDefinitionOpensuse153:
Image: "#{AWS::AccountId}.dkr.ecr.#{AWS::Region}.amazonaws.com/r-builds:opensuse-153"
Timeout:
AttemptDurationSeconds: 7200
rBuildsBatchJobDefinitionOpensuse154:
Type: AWS::Batch::JobDefinition
Properties:
Type: container
ContainerProperties:
Command:
- ./build.sh
Vcpus: 4
Memory: 4096
JobRoleArn:
"Fn::GetAtt": [ rBuildsEcsTaskIamRole, Arn ]
Image: "#{AWS::AccountId}.dkr.ecr.#{AWS::Region}.amazonaws.com/r-builds:opensuse-154"
Timeout:
AttemptDurationSeconds: 7200
# step function cloudwatch event trigger resources
rBuildsEventRuleIamRole:

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@ -53,7 +53,9 @@ provider:
Ref: rBuildsBatchJobDefinitionRhel9
JOB_DEFINITION_ARN_opensuse_153:
Ref: rBuildsBatchJobDefinitionOpensuse153
SUPPORTED_PLATFORMS: ubuntu-1804,ubuntu-2004,ubuntu-2204,debian-10,debian-11,centos-7,centos-8,rhel-9,opensuse-153
JOB_DEFINITION_ARN_opensuse_154:
Ref: rBuildsBatchJobDefinitionOpensuse154
SUPPORTED_PLATFORMS: ubuntu-1804,ubuntu-2004,ubuntu-2204,debian-10,debian-11,centos-7,centos-8,rhel-9,opensuse-153,opensuse-154
functions:
queueBuilds:

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@ -71,3 +71,11 @@ services:
- R_VERSION=${R_VERSION}
volumes:
- ../:/r-builds
opensuse-154:
image: opensuse/leap:15.4
command: /r-builds/test/test-zypper.sh
environment:
- OS_IDENTIFIER=opensuse-154
- R_VERSION=${R_VERSION}
volumes:
- ../:/r-builds