Add R builds for openSUSE 15.4/SLES 15 SP4
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9 changed files with 233 additions and 5 deletions
2
Makefile
2
Makefile
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@ -1,4 +1,4 @@
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PLATFORMS := ubuntu-1804 ubuntu-2004 ubuntu-2204 debian-10 debian-11 centos-7 centos-8 rhel-9 opensuse-153
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PLATFORMS := ubuntu-1804 ubuntu-2004 ubuntu-2204 debian-10 debian-11 centos-7 centos-8 rhel-9 opensuse-153 opensuse-154
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SLS_BINARY ?= ./node_modules/serverless/bin/serverless
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deps:
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@ -23,8 +23,8 @@ R binaries are built for the following Linux operating systems:
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- Debian 10, 11
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- CentOS 7
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- Red Hat Enterprise Linux 7, 8, 9
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- openSUSE 15.3
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- SUSE Linux Enterprise 15 SP3
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- openSUSE 15.3, 15.4
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- SUSE Linux Enterprise 15 SP3, 15 SP4
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Operating systems are supported until their vendor end-of-support dates, which
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can be found on the [RStudio Platform Support](https://www.rstudio.com/about/platform-support/)
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@ -139,6 +139,9 @@ Download the rpm package:
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```bash
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# openSUSE 15.3 / SLES 15 SP3
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wget https://cdn.rstudio.com/r/opensuse-153/pkgs/R-${R_VERSION}-1-1.x86_64.rpm
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# openSUSE 15.4 / SLES 15 SP4
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wget https://cdn.rstudio.com/r/opensuse-154/pkgs/R-${R_VERSION}-1-1.x86_64.rpm
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```
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Then install the package:
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101
builder/Dockerfile.opensuse-154
Normal file
101
builder/Dockerfile.opensuse-154
Normal file
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@ -0,0 +1,101 @@
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FROM opensuse/leap:15.4
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ENV OS_IDENTIFIER opensuse-154
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# Most of these packages, and also the configure options that follow were determined
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# by reviewing "R-base.spec" from the following OpenSUSE RPM:
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# https://download.opensuse.org/repositories/devel:/languages:/R:/released/openSUSE_Leap_42.3/src/R-base-3.5.3-103.1.src.rpm
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RUN zypper --non-interactive update
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RUN zypper --non-interactive --gpg-auto-import-keys -n install \
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bzip2 \
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cairo-devel \
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curl \
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fdupes \
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gcc \
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gcc-c++ \
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gcc-fortran \
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glib2-devel \
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glibc-locale \
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help2man \
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# Like openSUSE/SLES 15.3, SUSE 15.4 ships with both ICU 65 (libicu-devel) and
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# ICU 69 (icu.691-devel). Prefer ICU 69 because the devel packages can't coexist, and
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# zypper resolves libicu-devel to icu.691-devel when installing RPMs.
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icu.691-devel \
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java-11-openjdk-devel \
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libX11-devel \
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libXScrnSaver-devel \
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libXmu-devel \
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libXt-devel \
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libbz2-devel \
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libcurl-devel \
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libjpeg-devel \
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libpng-devel \
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libtiff-devel \
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make \
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pango-devel \
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pcre-devel \
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pcre2-devel \
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perl \
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perl-macros \
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readline-devel \
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rpm-build \
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ruby \
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ruby-devel \
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shadow \
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tcl-devel \
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texinfo \
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texlive-ae \
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texlive-bibtex \
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texlive-cm-super \
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texlive-dvips \
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texlive-fancyvrb \
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texlive-helvetic \
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texlive-inconsolata \
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texlive-latex \
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texlive-makeindex \
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texlive-metafont \
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texlive-psnfss \
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texlive-tex \
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texlive-times \
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tk-devel \
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unzip \
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wget \
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xdg-utils \
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xorg-x11-devel \
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xz-devel \
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zip \
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zlib-devel \
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&& zypper clean
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# Install AWS CLI
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RUN curl "https://awscli.amazonaws.com/awscli-exe-linux-x86_64.zip" -o "awscliv2.zip" && \
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unzip awscliv2.zip && \
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./aws/install && \
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rm -rf aws awscliv2.zip
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RUN gem install fpm && \
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ln -s /usr/bin/fpm.ruby2.5 /usr/local/bin/fpm
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RUN chmod 0777 /opt
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# Configure flags for SUSE that don't use the defaults in build.sh
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ENV CONFIGURE_OPTIONS="\
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--enable-R-shlib \
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--with-tcltk \
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--with-x \
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--enable-memory-profiling \
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--with-tcl-config=/usr/lib64/tclConfig.sh \
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--with-tk-config=/usr/lib64/tkConfig.sh"
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# Make sure that patching Java does not break R.
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# On SUSE, the default JAVA_HOME path always uses the major Java version only,
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# but the JDK path is chosen by default. We change this to the JRE path to
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# support users who only want to install the JRE (non-devel) package.
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# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Java-support
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# https://solutions.rstudio.com/r/using-rjava/
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ENV JAVA_HOME=/usr/lib64/jvm/jre-11-openjdk
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COPY package.opensuse-154 /package.sh
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COPY build.sh .
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ENTRYPOINT ./build.sh
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@ -98,3 +98,14 @@ services:
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image: r-builds:opensuse-153
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volumes:
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- ./integration/tmp:/tmp/output
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opensuse-154:
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command: ./build.sh
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environment:
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- R_VERSION=${R_VERSION}
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- LOCAL_STORE=/tmp/output
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build:
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context: .
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dockerfile: Dockerfile.opensuse-154
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image: r-builds:opensuse-154
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volumes:
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- ./integration/tmp:/tmp/output
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87
builder/package.opensuse-154
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87
builder/package.opensuse-154
Normal file
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@ -0,0 +1,87 @@
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#!/bin/bash
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if [[ ! -d /tmp/output/opensuse-154 ]]; then
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mkdir -p /tmp/output/opensuse-154
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fi
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# R 3.x requires PCRE1
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pcre_lib='pcre2-devel'
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if [[ "${R_VERSION}" =~ ^3 ]]; then
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pcre_lib='pcre-devel'
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fi
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# Create post-install script required for OpenBLAS.
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#
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# On RHEL and SUSE, we link R against the internal shared BLAS to make the
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# R binaries more portable and allow users to switch BLAS implementations without
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# having to recompile R. We default to OpenBLAS, but users may prefer other implementations.
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#
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# Binary packages built against the shared BLAS are also more portable and may be used
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# with the default R distributed by RHEL/SUSE, or other R installations using
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# shared BLAS and configured with a different BLAS (such as Microsoft R Open with MKL).
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# This is especially important for RSPM's binary packages.
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#
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# On Ubuntu/Debian, we link R against the external BLAS instead (--with-blas/--with-lapack),
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# as those distributions use the alternatives system to swap BLAS libraries at runtime.
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# The default R distributions on Ubuntu/Debian use the external BLAS, so we do as well
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# for portability.
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#
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# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Shared-BLAS
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cat <<EOF >> /post-install.sh
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mv /opt/R/${R_VERSION}/lib/R/lib/libRblas.so /opt/R/${R_VERSION}/lib/R/lib/libRblas.so.keep
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ln -s /usr/lib64/libopenblas.so /opt/R/${R_VERSION}/lib/R/lib/libRblas.so
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EOF
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# Create after-remove script to remove internal BLAS, which won't be cleaned up automatically.
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cat <<EOF >> /after-remove.sh
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if [ -d /opt/R/${R_VERSION} ]; then
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rm -r /opt/R/${R_VERSION}
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fi
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EOF
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fpm \
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-s dir \
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-t rpm \
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-v 1 \
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-n "R-${R_VERSION}" \
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--vendor "RStudio, PBC" \
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--url "http://www.r-project.org/" \
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--description "GNU R statistical computation and graphics system" \
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--maintainer "RStudio, PBC <https://github.com/rstudio/r-builds>" \
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--license "GPLv2" \
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--after-install /post-install.sh \
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--after-remove /after-remove.sh \
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-p /tmp/output/opensuse-154/ \
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-d fontconfig \
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-d gcc \
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-d gcc-c++ \
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-d gcc-fortran \
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-d glibc-locale \
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-d gzip \
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-d icu.691-devel \
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-d libbz2-devel \
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-d libcairo2 \
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-d libcurl-devel \
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-d libfreetype6 \
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-d libgomp1 \
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-d libjpeg62 \
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-d libopenblas_pthreads-devel \
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-d libpango-1_0-0 \
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-d libreadline7 \
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-d libtiff5 \
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-d make \
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-d ${pcre_lib} \
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-d tar \
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-d tcl \
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-d tk \
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-d unzip \
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-d which \
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-d xorg-x11 \
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-d xorg-x11-fonts-100dpi \
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-d xorg-x11-fonts-75dpi \
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-d xz-devel \
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-d zip \
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-d zlib-devel \
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"/opt/R/${R_VERSION}"
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export PKG_FILE=$(ls /tmp/output/opensuse-154/R-${R_VERSION}*.rpm | head -1)
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@ -194,7 +194,9 @@ download_url () {
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echo "${CDN_URL}/opensuse-42/pkgs/${name}"
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;;
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"LEAP15" | "SLES15")
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if [ "${ver}" -ge 153 ]; then
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if [ "${ver}" -ge 154 ]; then
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echo "${CDN_URL}/opensuse-154/pkgs/${name}"
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elif [ "${ver}" -ge 153 ]; then
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echo "${CDN_URL}/opensuse-153/pkgs/${name}"
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elif [ "${ver}" -eq 152 ]; then
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echo "${CDN_URL}/opensuse-152/pkgs/${name}"
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@ -256,6 +256,20 @@ rBuildsBatchJobDefinitionOpensuse153:
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Image: "#{AWS::AccountId}.dkr.ecr.#{AWS::Region}.amazonaws.com/r-builds:opensuse-153"
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Timeout:
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AttemptDurationSeconds: 7200
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rBuildsBatchJobDefinitionOpensuse154:
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Type: AWS::Batch::JobDefinition
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Properties:
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Type: container
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ContainerProperties:
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Command:
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- ./build.sh
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Vcpus: 4
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Memory: 4096
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JobRoleArn:
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"Fn::GetAtt": [ rBuildsEcsTaskIamRole, Arn ]
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Image: "#{AWS::AccountId}.dkr.ecr.#{AWS::Region}.amazonaws.com/r-builds:opensuse-154"
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Timeout:
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AttemptDurationSeconds: 7200
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# step function cloudwatch event trigger resources
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rBuildsEventRuleIamRole:
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@ -53,7 +53,9 @@ provider:
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Ref: rBuildsBatchJobDefinitionRhel9
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JOB_DEFINITION_ARN_opensuse_153:
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Ref: rBuildsBatchJobDefinitionOpensuse153
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SUPPORTED_PLATFORMS: ubuntu-1804,ubuntu-2004,ubuntu-2204,debian-10,debian-11,centos-7,centos-8,rhel-9,opensuse-153
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JOB_DEFINITION_ARN_opensuse_154:
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Ref: rBuildsBatchJobDefinitionOpensuse154
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SUPPORTED_PLATFORMS: ubuntu-1804,ubuntu-2004,ubuntu-2204,debian-10,debian-11,centos-7,centos-8,rhel-9,opensuse-153,opensuse-154
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functions:
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queueBuilds:
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@ -71,3 +71,11 @@ services:
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- R_VERSION=${R_VERSION}
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volumes:
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- ../:/r-builds
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opensuse-154:
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image: opensuse/leap:15.4
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command: /r-builds/test/test-zypper.sh
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environment:
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- OS_IDENTIFIER=opensuse-154
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- R_VERSION=${R_VERSION}
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volumes:
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- ../:/r-builds
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