From f5a104562ef87c8b37df42193b75e1bff6c0f54d Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?G=C3=A1bor=20Cs=C3=A1rdi?= Date: Thu, 2 Feb 2023 07:44:27 -0800 Subject: [PATCH] Use corrent DEB packages Need gcc, g++, gfortran for R <= 4.2.x, and gcc-8, g++-8, gofrtran-8 for R >= 4.3.0. --- builder/build.sh | 4 ++++ builder/package.ubuntu-1804 | 6 +++--- test/test-r.sh | 6 +++--- 3 files changed, 10 insertions(+), 6 deletions(-) diff --git a/builder/build.sh b/builder/build.sh index e34276b..9ae6ace 100755 --- a/builder/build.sh +++ b/builder/build.sh @@ -124,6 +124,9 @@ compile_r() { if [[ "${OS_IDENTIFIER}" = "ubuntu-1804" ]]; then default_configure_options="$default_configure_options \ CC=gcc-8 CXX=g++-8 FC=gfortran-8" + gcc_package=gcc-8 + gxx_package=g++-8 + gfortran_package=gfortran-8 fi fi @@ -172,6 +175,7 @@ EOF package_r() { if [[ -f /package.sh ]]; then export R_VERSION=${1} + export gcc_package gxx_package gfortran_package source /package.sh fi } diff --git a/builder/package.ubuntu-1804 b/builder/package.ubuntu-1804 index 56d4317..f49efaf 100644 --- a/builder/package.ubuntu-1804 +++ b/builder/package.ubuntu-1804 @@ -27,9 +27,9 @@ deb: fields: Bugs: https://github.com/rstudio/r-builds/issues depends: -- g++-8 -- gcc-8 -- gfortran-8 +- ${gxx_package-g++} +- ${gcc_package-gcc} +- ${gfortran_package-gfortran} - libbz2-dev - libc6 - libcairo2 diff --git a/test/test-r.sh b/test/test-r.sh index 8783716..bd376dd 100755 --- a/test/test-r.sh +++ b/test/test-r.sh @@ -8,9 +8,9 @@ R_HOME=/opt/R/${R_VERSION}/lib/R "${R_HOME}/bin/Rscript" -e 'sessionInfo()' # List R devel dependencies -gcc --version -g++ --version -gfortran --version +$("${R_HOME}/bin/R" CMD config CC) --version +$("${R_HOME}/bin/R" CMD config CXX) --version +$("${R_HOME}/bin/R" CMD config FC) --version # List shared library dependencies (e.g. BLAS/LAPACK) LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${R_HOME}/lib ldd "${R_HOME}/lib/libR.so"