fix(alpine): build R with cairo, png, jpeg and tiff graphics devices
The Alpine builder images install R-dev but never the graphics headers.
R's configure treats those as optional and does not fail when they are
absent, so the build succeeds and ships an R whose capabilities() reports
cairo, png, jpeg and tiff as FALSE. Installing the runtime libraries on
the target system afterwards cannot bring compiled-out devices back.
Note that --with-x=no was not the cause. R's bitmap and pangocairo checks
run independently of R_X11, and libpng was in fact found. capabilities("png")
needs a device backend, and with X11 off and cairo absent there was none,
which is why all four read FALSE. X11 stays off: these are headless images
and cairo covers png()/jpeg()/tiff()/svg().
- Install pkgconf, cairo-dev, pango-dev, fontconfig-dev, freetype-dev,
libpng-dev, jpeg-dev, tiff-dev and zlib-dev in every Alpine builder image.
- Pass --with-cairo, --with-libpng, --with-jpeglib and --with-libtiff
explicitly so the intent is visible next to --with-x=no.
- Assert REQUIRED_CAPABILITIES after make install, so a build that loses a
device fails instead of being packaged and uploaded. Opt-in per Dockerfile,
leaving the other platforms untouched.
- Add a FORCE_REBUILD escape hatch to the dedup step. Artifact filenames
carry only the R version, so the HEAD probe would otherwise keep skipping
every Alpine version and serving the stale broken binaries.
- Record the three gotchas in CLAUDE.md.
Verified by compiling R 4.5.1 in the patched alpine-322 image: jpeg, png,
tiff and cairo are TRUE, default bitmapType is cairo, and all four devices
render. The guard was exercised in both directions against that build.
This commit is contained in:
parent
56d26ef59c
commit
c144a0c8b9
6 changed files with 130 additions and 11 deletions
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@ -5,6 +5,13 @@ ENV OS_IDENTIFIER alpine-320
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RUN set -x \
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&& apk add -q R-dev curl ca-certificates bash g++ tzdata openjdk17 texmf-dist texlive-full tar sed patch tcl tk tk-dev xvfb libdeflate libdeflate-dev
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# Graphics devices. R's configure only enables the cairo/png/jpeg/tiff devices
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# when the corresponding headers are present at compile time, and pkgconf must
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# exist for the pangocairo check to run at all. Without these, capabilities()
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# reports cairo/png/jpeg/tiff as FALSE, and installing the runtime libraries
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# afterwards cannot bring the compiled-out devices back.
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RUN apk add -q pkgconf cairo-dev pango-dev fontconfig-dev freetype-dev libpng-dev jpeg-dev tiff-dev zlib-dev
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# Install s5cmd for S3 uploads (much faster than AWS CLI)
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RUN ARCH=$(uname -m); if [ "$ARCH" = "x86_64" ]; then S5CMD_ARCH="64bit"; else S5CMD_ARCH="arm64"; fi && \
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curl -sL "https://github.com/peak/s5cmd/releases/download/v2.3.0/s5cmd_2.3.0_Linux-${S5CMD_ARCH}.tar.gz" | tar xz -C /usr/local/bin s5cmd
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@ -18,7 +25,12 @@ RUN chmod 0777 /opt
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# Override the default pager used by R
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ENV PAGER /usr/bin/pager
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ENV CONFIGURE_OPTIONS "--enable-R-shlib --with-tcltk --enable-memory-profiling --with-x=no --with-blas --with-lapack"
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# X11 stays off: these are headless images, and the cairo/bitmap devices are
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# detected independently of X11, so png()/svg() still work via cairo.
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ENV CONFIGURE_OPTIONS "--enable-R-shlib --with-tcltk --enable-memory-profiling --with-x=no --with-cairo --with-libpng --with-jpeglib --with-libtiff --with-blas --with-lapack"
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# Fail the build if a graphics device silently drops out again.
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ENV REQUIRED_CAPABILITIES "cairo,png,jpeg,tiff"
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COPY package.alpine-320 /package.sh
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COPY build.sh .
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@ -5,6 +5,13 @@ ENV OS_IDENTIFIER alpine-321
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RUN set -x \
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&& apk add -q R-dev curl ca-certificates bash g++ tzdata openjdk17 texmf-dist texlive-full tar sed patch tcl tk tk-dev xvfb libdeflate libdeflate-dev
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# Graphics devices. R's configure only enables the cairo/png/jpeg/tiff devices
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# when the corresponding headers are present at compile time, and pkgconf must
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# exist for the pangocairo check to run at all. Without these, capabilities()
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# reports cairo/png/jpeg/tiff as FALSE, and installing the runtime libraries
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# afterwards cannot bring the compiled-out devices back.
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RUN apk add -q pkgconf cairo-dev pango-dev fontconfig-dev freetype-dev libpng-dev jpeg-dev tiff-dev zlib-dev
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# Install s5cmd for S3 uploads (much faster than AWS CLI)
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RUN ARCH=$(uname -m); if [ "$ARCH" = "x86_64" ]; then S5CMD_ARCH="64bit"; else S5CMD_ARCH="arm64"; fi && \
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curl -sL "https://github.com/peak/s5cmd/releases/download/v2.3.0/s5cmd_2.3.0_Linux-${S5CMD_ARCH}.tar.gz" | tar xz -C /usr/local/bin s5cmd
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@ -18,7 +25,12 @@ RUN chmod 0777 /opt
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# Override the default pager used by R
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ENV PAGER /usr/bin/pager
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ENV CONFIGURE_OPTIONS "--enable-R-shlib --with-tcltk --enable-memory-profiling --with-x=no --with-blas --with-lapack"
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# X11 stays off: these are headless images, and the cairo/bitmap devices are
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# detected independently of X11, so png()/svg() still work via cairo.
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ENV CONFIGURE_OPTIONS "--enable-R-shlib --with-tcltk --enable-memory-profiling --with-x=no --with-cairo --with-libpng --with-jpeglib --with-libtiff --with-blas --with-lapack"
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# Fail the build if a graphics device silently drops out again.
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ENV REQUIRED_CAPABILITIES "cairo,png,jpeg,tiff"
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COPY package.alpine-321 /package.sh
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COPY build.sh .
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@ -5,6 +5,13 @@ ENV OS_IDENTIFIER alpine-322
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RUN set -x \
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&& apk add -q R-dev curl ca-certificates bash g++ tzdata openjdk17 texmf-dist texlive-full tar sed patch tcl tk tk-dev xvfb libdeflate libdeflate-dev
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# Graphics devices. R's configure only enables the cairo/png/jpeg/tiff devices
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# when the corresponding headers are present at compile time, and pkgconf must
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# exist for the pangocairo check to run at all. Without these, capabilities()
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# reports cairo/png/jpeg/tiff as FALSE, and installing the runtime libraries
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# afterwards cannot bring the compiled-out devices back.
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RUN apk add -q pkgconf cairo-dev pango-dev fontconfig-dev freetype-dev libpng-dev jpeg-dev tiff-dev zlib-dev
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# Install s5cmd for S3 uploads (much faster than AWS CLI)
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RUN ARCH=$(uname -m); if [ "$ARCH" = "x86_64" ]; then S5CMD_ARCH="64bit"; else S5CMD_ARCH="arm64"; fi && \
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curl -sL "https://github.com/peak/s5cmd/releases/download/v2.3.0/s5cmd_2.3.0_Linux-${S5CMD_ARCH}.tar.gz" | tar xz -C /usr/local/bin s5cmd
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@ -18,7 +25,12 @@ RUN chmod 0777 /opt
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# Override the default pager used by R
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ENV PAGER /usr/bin/pager
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ENV CONFIGURE_OPTIONS "--enable-R-shlib --with-tcltk --enable-memory-profiling --with-x=no --with-blas --with-lapack"
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# X11 stays off: these are headless images, and the cairo/bitmap devices are
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# detected independently of X11, so png()/svg() still work via cairo.
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ENV CONFIGURE_OPTIONS "--enable-R-shlib --with-tcltk --enable-memory-profiling --with-x=no --with-cairo --with-libpng --with-jpeglib --with-libtiff --with-blas --with-lapack"
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# Fail the build if a graphics device silently drops out again.
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ENV REQUIRED_CAPABILITIES "cairo,png,jpeg,tiff"
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COPY package.alpine-322 /package.sh
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COPY build.sh .
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@ -5,6 +5,13 @@ ENV OS_IDENTIFIER alpine-323
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RUN set -x \
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&& apk add -q R-dev curl ca-certificates bash g++ tzdata openjdk17 texmf-dist texlive-full tar sed patch tcl tk tk-dev xvfb libdeflate libdeflate-dev
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# Graphics devices. R's configure only enables the cairo/png/jpeg/tiff devices
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# when the corresponding headers are present at compile time, and pkgconf must
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# exist for the pangocairo check to run at all. Without these, capabilities()
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# reports cairo/png/jpeg/tiff as FALSE, and installing the runtime libraries
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# afterwards cannot bring the compiled-out devices back.
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RUN apk add -q pkgconf cairo-dev pango-dev fontconfig-dev freetype-dev libpng-dev jpeg-dev tiff-dev zlib-dev
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# Install s5cmd for S3 uploads (much faster than AWS CLI)
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RUN ARCH=$(uname -m); if [ "$ARCH" = "x86_64" ]; then S5CMD_ARCH="64bit"; else S5CMD_ARCH="arm64"; fi && \
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curl -sL "https://github.com/peak/s5cmd/releases/download/v2.3.0/s5cmd_2.3.0_Linux-${S5CMD_ARCH}.tar.gz" | tar xz -C /usr/local/bin s5cmd
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@ -18,7 +25,12 @@ RUN chmod 0777 /opt
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# Override the default pager used by R
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ENV PAGER /usr/bin/pager
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ENV CONFIGURE_OPTIONS "--enable-R-shlib --with-tcltk --enable-memory-profiling --with-x=no --with-blas --with-lapack"
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# X11 stays off: these are headless images, and the cairo/bitmap devices are
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# detected independently of X11, so png()/svg() still work via cairo.
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ENV CONFIGURE_OPTIONS "--enable-R-shlib --with-tcltk --enable-memory-profiling --with-x=no --with-cairo --with-libpng --with-jpeglib --with-libtiff --with-blas --with-lapack"
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# Fail the build if a graphics device silently drops out again.
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ENV REQUIRED_CAPABILITIES "cairo,png,jpeg,tiff"
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COPY package.alpine-322 /package.sh
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COPY build.sh .
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@ -5,6 +5,13 @@ ENV OS_IDENTIFIER alpine-324
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RUN set -x \
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&& apk add -q R-dev curl ca-certificates bash g++ tzdata openjdk17 texmf-dist texlive-full tar sed patch tcl tk tk-dev xvfb libdeflate libdeflate-dev
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# Graphics devices. R's configure only enables the cairo/png/jpeg/tiff devices
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# when the corresponding headers are present at compile time, and pkgconf must
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# exist for the pangocairo check to run at all. Without these, capabilities()
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# reports cairo/png/jpeg/tiff as FALSE, and installing the runtime libraries
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# afterwards cannot bring the compiled-out devices back.
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RUN apk add -q pkgconf cairo-dev pango-dev fontconfig-dev freetype-dev libpng-dev jpeg-dev tiff-dev zlib-dev
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# Install s5cmd for S3 uploads (much faster than AWS CLI)
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RUN ARCH=$(uname -m); if [ "$ARCH" = "x86_64" ]; then S5CMD_ARCH="64bit"; else S5CMD_ARCH="arm64"; fi && \
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curl -sL "https://github.com/peak/s5cmd/releases/download/v2.3.0/s5cmd_2.3.0_Linux-${S5CMD_ARCH}.tar.gz" | tar xz -C /usr/local/bin s5cmd
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@ -18,7 +25,12 @@ RUN chmod 0777 /opt
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# Override the default pager used by R
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ENV PAGER /usr/bin/pager
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ENV CONFIGURE_OPTIONS "--enable-R-shlib --with-tcltk --enable-memory-profiling --with-x=no --with-blas --with-lapack"
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# X11 stays off: these are headless images, and the cairo/bitmap devices are
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# detected independently of X11, so png()/svg() still work via cairo.
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ENV CONFIGURE_OPTIONS "--enable-R-shlib --with-tcltk --enable-memory-profiling --with-x=no --with-cairo --with-libpng --with-jpeglib --with-libtiff --with-blas --with-lapack"
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# Fail the build if a graphics device silently drops out again.
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ENV REQUIRED_CAPABILITIES "cairo,png,jpeg,tiff"
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COPY package.alpine-324 /package.sh
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COPY build.sh .
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@ -209,6 +209,47 @@ local({
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EOF
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}
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# verify_capabilities()
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# Guard against a graphics device being silently compiled out. R's configure
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# only enables the cairo/png/jpeg/tiff devices when the matching headers were
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# present at compile time, and it does not fail when they are missing, so a
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# missing -dev package produces a working R that simply cannot draw. Once that
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# tarball is published, installing the runtime libraries on the target system
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# cannot bring the devices back; the build has to be redone.
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#
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# Dockerfiles opt in by setting REQUIRED_CAPABILITIES to a comma-separated list
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# of capabilities() names, e.g. "cairo,png,jpeg,tiff".
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verify_capabilities() {
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if [ -z "${REQUIRED_CAPABILITIES}" ]; then
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return 0
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fi
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echo "Verifying required R capabilities: ${REQUIRED_CAPABILITIES}"
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# The full capabilities() table goes to stderr so it shows up in the build
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# log; stdout carries only the space-separated list of missing entries.
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local missing
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missing=$("${R_INSTALL_PATH}/bin/Rscript" --vanilla -e '
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required <- trimws(strsplit(Sys.getenv("REQUIRED_CAPABILITIES"), ",")[[1]])
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required <- required[nzchar(required)]
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caps <- capabilities()
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writeLines(capture.output(print(caps)), con = stderr())
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ok <- (required %in% names(caps)) & (unname(caps[required]) %in% TRUE)
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cat(paste(required[!ok], collapse = " "), "\n", sep = "")
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') || {
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echo "ERROR: could not query capabilities() from the freshly built R" >&2
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return 1
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}
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if [ -n "${missing}" ]; then
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echo "ERROR: R ${R_VERSION} for ${OS_IDENTIFIER} is missing required capabilities: ${missing}" >&2
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echo "ERROR: install the matching -dev packages in builder/Dockerfile.${OS_IDENTIFIER} and rebuild." >&2
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return 1
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fi
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echo "All required capabilities are present."
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}
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# check for packager script
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## If it exists this build is ready for packaging with nFPM, so run the script
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## else do nothing
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@ -236,6 +277,7 @@ set_up_environment
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fetch_r_source $R_VERSION
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patch_r $R_VERSION
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compile_r $R_VERSION
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verify_capabilities
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package_r $R_VERSION
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archive_r
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upload_r $R_VERSION
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