Fix flexiblas
This commit is contained in:
Colin Rundel
parent
afa8fddca0
commit
c0f78b5f75
4 changed files with 16 additions and 100 deletions
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@ -58,7 +58,7 @@ RUN curl -LO "https://github.com/goreleaser/nfpm/releases/download/v2.18.1/nfpm_
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RUN chmod 0777 /opt
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RUN chmod 0777 /opt
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# Configure flags for RHEL 9 that don't use the defaults in build.sh
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# Configure flags for that don't use the defaults in build.sh
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ENV CONFIGURE_OPTIONS="\
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ENV CONFIGURE_OPTIONS="\
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--enable-R-shlib \
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--enable-R-shlib \
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--with-tcltk \
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--with-tcltk \
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@ -58,7 +58,7 @@ RUN curl -LO "https://github.com/goreleaser/nfpm/releases/download/v2.18.1/nfpm_
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RUN chmod 0777 /opt
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RUN chmod 0777 /opt
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# Configure flags for RHEL 9 that don't use the defaults in build.sh
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# Configure flags that don't use the defaults in build.sh
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ENV CONFIGURE_OPTIONS="\
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ENV CONFIGURE_OPTIONS="\
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--enable-R-shlib \
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--enable-R-shlib \
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--with-tcltk \
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--with-tcltk \
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@ -11,60 +11,18 @@ if [[ "${R_VERSION}" =~ ^3 ]]; then
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- pcre-devel'
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- pcre-devel'
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fi
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fi
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# On RHEL and SUSE, we link R against the internal shared BLAS to make the
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blas_lib='flexiblas-devel'
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# R binaries more portable and allow users to switch BLAS implementations without
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# having to recompile R. We default to OpenBLAS, but users may prefer other implementations.
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#
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# Binary packages built against the shared BLAS are also more portable and may be used
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# with the default R distributed by RHEL/SUSE, or other R installations using
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# shared BLAS and configured with a different BLAS (such as Microsoft R Open with MKL).
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# This is especially important for Posit Package Manager's binary packages.
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#
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# However, EPEL 9's R now links externally against FlexiBLAS, which provides a
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# native BLAS switching mechanism for Fedora/RHEL. Starting with R 4.3.0, we also
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# link to external FlexiBLAS for compatibility.
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# https://fedoraproject.org/wiki/Changes/FlexiBLAS_as_BLAS/LAPACK_manager
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#
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# On Ubuntu/Debian, we link R against the external BLAS instead (--with-blas/--with-lapack),
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# as those distributions use the alternatives system to swap BLAS libraries at runtime.
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# The default R distributions on Ubuntu/Debian use the external BLAS, so we do as well
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# for portability.
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#
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# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Shared-BLAS
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if [[ "$("${R_INSTALL_PATH}/bin/R" CMD config BLAS_LIBS)" == "-lflexiblas" ]]; then
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blas_lib='flexiblas-devel'
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# Create postremove script to remove empty directories, as nFPM doesn't include them in the RPM files.
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# Create postremove script to remove empty directories, as nFPM doesn't include them in the RPM files.
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cat <<EOF >> /after-remove.sh
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cat <<EOF >> /after-remove.sh
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if [ -d ${R_INSTALL_PATH} ]; then
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if [ -d ${R_INSTALL_PATH} ]; then
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rm -r ${R_INSTALL_PATH}
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rm -r ${R_INSTALL_PATH}
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fi
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EOF
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scripts="scripts:
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postremove: /after-remove.sh
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"
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else
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blas_lib='openblas-devel'
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# Create post-install script required for OpenBLAS.
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cat <<EOF >> /post-install.sh
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mv ${R_INSTALL_PATH}/lib/R/lib/libRblas.so ${R_INSTALL_PATH}/lib/R/lib/libRblas.so.keep
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ln -s /usr/lib64/libopenblasp.so ${R_INSTALL_PATH}/lib/R/lib/libRblas.so
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EOF
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# Create after-remove script to remove internal BLAS, which won't be cleaned up automatically.
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cat <<EOF >> /after-remove.sh
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if [ -d ${R_INSTALL_PATH} ]; then
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rm -r ${R_INSTALL_PATH}
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fi
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EOF
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scripts="scripts:
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postinstall: /post-install.sh
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postremove: /after-remove.sh
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"
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fi
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fi
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EOF
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scripts="scripts:
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postremove: /after-remove.sh
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"
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if [ "$(arch)" == "aarch64" ]; then echo arm64; else echo amd64; fi > /tmp/arch
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if [ "$(arch)" == "aarch64" ]; then echo arm64; else echo amd64; fi > /tmp/arch
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@ -11,60 +11,18 @@ if [[ "${R_VERSION}" =~ ^3 ]]; then
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- pcre-devel'
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- pcre-devel'
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fi
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fi
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# On RHEL and SUSE, we link R against the internal shared BLAS to make the
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blas_lib='flexiblas-devel'
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# R binaries more portable and allow users to switch BLAS implementations without
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# having to recompile R. We default to OpenBLAS, but users may prefer other implementations.
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#
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# Binary packages built against the shared BLAS are also more portable and may be used
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# with the default R distributed by RHEL/SUSE, or other R installations using
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# shared BLAS and configured with a different BLAS (such as Microsoft R Open with MKL).
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# This is especially important for Posit Package Manager's binary packages.
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#
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# However, EPEL 9's R now links externally against FlexiBLAS, which provides a
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# native BLAS switching mechanism for Fedora/RHEL. Starting with R 4.3.0, we also
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# link to external FlexiBLAS for compatibility.
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# https://fedoraproject.org/wiki/Changes/FlexiBLAS_as_BLAS/LAPACK_manager
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#
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# On Ubuntu/Debian, we link R against the external BLAS instead (--with-blas/--with-lapack),
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# as those distributions use the alternatives system to swap BLAS libraries at runtime.
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# The default R distributions on Ubuntu/Debian use the external BLAS, so we do as well
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# for portability.
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#
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# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Shared-BLAS
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if [[ "$("${R_INSTALL_PATH}/bin/R" CMD config BLAS_LIBS)" == "-lflexiblas" ]]; then
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blas_lib='flexiblas-devel'
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# Create postremove script to remove empty directories, as nFPM doesn't include them in the RPM files.
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# Create postremove script to remove empty directories, as nFPM doesn't include them in the RPM files.
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cat <<EOF >> /after-remove.sh
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cat <<EOF >> /after-remove.sh
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if [ -d ${R_INSTALL_PATH} ]; then
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if [ -d ${R_INSTALL_PATH} ]; then
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rm -r ${R_INSTALL_PATH}
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rm -r ${R_INSTALL_PATH}
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fi
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EOF
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scripts="scripts:
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postremove: /after-remove.sh
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"
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else
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blas_lib='openblas-devel'
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# Create post-install script required for OpenBLAS.
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cat <<EOF >> /post-install.sh
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mv ${R_INSTALL_PATH}/lib/R/lib/libRblas.so ${R_INSTALL_PATH}/lib/R/lib/libRblas.so.keep
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ln -s /usr/lib64/libopenblasp.so ${R_INSTALL_PATH}/lib/R/lib/libRblas.so
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EOF
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# Create after-remove script to remove internal BLAS, which won't be cleaned up automatically.
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cat <<EOF >> /after-remove.sh
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if [ -d ${R_INSTALL_PATH} ]; then
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rm -r ${R_INSTALL_PATH}
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fi
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EOF
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scripts="scripts:
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postinstall: /post-install.sh
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postremove: /after-remove.sh
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"
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fi
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fi
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EOF
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scripts="scripts:
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postremove: /after-remove.sh
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"
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if [ "$(arch)" == "aarch64" ]; then echo arm64; else echo amd64; fi > /tmp/arch
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if [ "$(arch)" == "aarch64" ]; then echo arm64; else echo amd64; fi > /tmp/arch
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