Merge pull request #181 from rundel/fedora

Add builds for Fedora 37 and 38
2023-08-03 12:53:57 -05:00 · 2023-08-03 12:53:57 -05:00 · 9fe1725620
commit 9fe1725620
parent 03dbd456d4 093675c29a
11 changed files with 434 additions and 9 deletions
--- a/2
+++ b/2
@ -1,4 +1,4 @@
-PLATFORMS := ubuntu-2004 ubuntu-2204 debian-10 debian-11 debian-12 centos-7 centos-8 rhel-9 opensuse-154
+PLATFORMS := ubuntu-2004 ubuntu-2204 debian-10 debian-11 debian-12 centos-7 centos-8 rhel-9 opensuse-154 fedora-37 fedora-38
 SLS_BINARY ?= ./node_modules/serverless/bin/serverless.js

 deps:
--- a/README.md
+++ b/README.md
@ -25,6 +25,7 @@ R binaries are built for the following Linux operating systems:
 - Red Hat Enterprise Linux 7, 8, 9
 - openSUSE 15.4
 - SUSE Linux Enterprise 15 SP4
+- Fedora 37, 38

 Operating systems are supported until their vendor end-of-support dates, which
 can be found on the [Posit Platform Support](https://posit.co/about/platform-support/)
@ -146,6 +147,24 @@ Then install the package:
 sudo zypper --no-gpg-checks install R-${R_VERSION}-1-1.x86_64.rpm
 ```

+#### Fedora Linux
+
+Download the rpm package:
+```bash
+# Fedora 37
+curl -O https://cdn.posit.co/r/fedora-37/pkgs/r-${R_VERSION}_1_amd64.rpm
+
+# Fedora 38
+curl -O https://cdn.posit.co/r/fedora-38/pkgs/r-${R_VERSION}_1_amd64.rpm
+```
+
+Then install the package:
+```bash
+sudo dnf install r-${R_VERSION}_1_amd64.rpm
+```
+
+
+
 ### Verify R installation

 Test that R was successfully installed by running:
--- a/builder/Dockerfile.fedora-37
+++ b/builder/Dockerfile.fedora-37
@ -0,0 +1,88 @@
+FROM fedora:37
+
+ENV OS_IDENTIFIER fedora-37
+
+RUN dnf -y upgrade \
+    && dnf -y install dnf-plugins-core \
+    && dnf -y install \
+    autoconf \
+    automake \
+    bzip2-devel \
+    cairo-devel \
+    flexiblas-devel \
+    gcc-c++ \
+    gcc-gfortran \
+    java-11-openjdk-devel \
+    libICE-devel \
+    libSM-devel \
+    libX11-devel \
+    libXmu-devel \
+    libXt-devel \
+    libcurl-devel \
+    libicu-devel \
+    libjpeg-devel \
+    libpng-devel \
+    libtiff-devel \
+    libtool \
+    make \
+    ncurses-devel \
+    pango-devel \
+    pcre-devel \
+    pcre2-devel \
+    readline-devel \
+    rpm-build \
+    tcl-devel \
+    tex \
+    texinfo-tex \
+    texlive-collection-latexrecommended \
+    tk-devel \
+    unzip \
+    valgrind-devel \
+    which \
+    wget \
+    xz-devel \
+    zlib-devel \
+    && dnf clean all
+
+# Install AWS CLI
+RUN curl "https://awscli.amazonaws.com/awscli-exe-linux-$(uname -m).zip" -o "awscliv2.zip" && \
+    unzip awscliv2.zip && \
+    ./aws/install && \
+    rm -rf aws awscliv2.zip
+
+RUN if [ "$(arch)" == "aarch64" ]; then echo arm64; else echo amd64; fi > /tmp/arch
+
+RUN curl -LO "https://github.com/goreleaser/nfpm/releases/download/v2.18.1/nfpm_$(cat /tmp/arch).rpm" && \
+    dnf install -y "nfpm_$(cat /tmp/arch).rpm" && \
+    rm "nfpm_$(cat /tmp/arch).rpm"
+
+RUN chmod 0777 /opt
+
+# Configure flags for that don't use the defaults in build.sh
+ENV CONFIGURE_OPTIONS="\
+    --enable-R-shlib \
+    --with-tcltk \
+    --enable-memory-profiling \
+    --with-x \
+    --with-system-valgrind-headers \
+    --with-tcl-config=/usr/lib64/tclConfig.sh \
+    --with-tk-config=/usr/lib64/tkConfig.sh \
+    --enable-prebuilt-html \
+    --with-blas=flexiblas \
+    --with-lapack=flexiblas"
+
+# Make sure that patching Java does not break R.
+# R's default JAVA_HOME path includes the exact Java version on CentOS/RHEL, which
+# requires users to run `R CMD javareconf` even on minor/patch upgrades. Use the
+# major version symlink to avoid this.
+# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Java-support
+# https://solutions.posit.co/envs-pkgs/using-rjava/
+ENV JAVA_HOME=/usr/lib/jvm/jre-11-openjdk
+
+# R 3.x requires PCRE2 for Pango support on RHEL 9
+ENV INCLUDE_PCRE2_IN_R_3 yes
+
+COPY package.fedora-37 /package.sh
+COPY build.sh .
+COPY patches /patches
+ENTRYPOINT ./build.sh
--- a/builder/Dockerfile.fedora-38
+++ b/builder/Dockerfile.fedora-38
@ -0,0 +1,88 @@
+FROM fedora:38
+
+ENV OS_IDENTIFIER fedora-38
+
+RUN dnf -y upgrade \
+    && dnf -y install dnf-plugins-core \
+    && dnf -y install \
+    autoconf \
+    automake \
+    bzip2-devel \
+    cairo-devel \
+    flexiblas-devel \
+    gcc-c++ \
+    gcc-gfortran \
+    java-11-openjdk-devel \
+    libICE-devel \
+    libSM-devel \
+    libX11-devel \
+    libXmu-devel \
+    libXt-devel \
+    libcurl-devel \
+    libicu-devel \
+    libjpeg-devel \
+    libpng-devel \
+    libtiff-devel \
+    libtool \
+    make \
+    ncurses-devel \
+    pango-devel \
+    pcre-devel \
+    pcre2-devel \
+    readline-devel \
+    rpm-build \
+    tcl-devel \
+    tex \
+    texinfo-tex \
+    texlive-collection-latexrecommended \
+    tk-devel \
+    unzip \
+    valgrind-devel \
+    which \
+    wget \
+    xz-devel \
+    zlib-devel \
+    && dnf clean all
+
+# Install AWS CLI
+RUN curl "https://awscli.amazonaws.com/awscli-exe-linux-$(uname -m).zip" -o "awscliv2.zip" && \
+    unzip awscliv2.zip && \
+    ./aws/install && \
+    rm -rf aws awscliv2.zip
+
+RUN if [ "$(arch)" == "aarch64" ]; then echo arm64; else echo amd64; fi > /tmp/arch
+
+RUN curl -LO "https://github.com/goreleaser/nfpm/releases/download/v2.18.1/nfpm_$(cat /tmp/arch).rpm" && \
+    dnf install -y "nfpm_$(cat /tmp/arch).rpm" && \
+    rm "nfpm_$(cat /tmp/arch).rpm"
+
+RUN chmod 0777 /opt
+
+# Configure flags that don't use the defaults in build.sh
+ENV CONFIGURE_OPTIONS="\
+    --enable-R-shlib \
+    --with-tcltk \
+    --enable-memory-profiling \
+    --with-x \
+    --with-system-valgrind-headers \
+    --with-tcl-config=/usr/lib64/tclConfig.sh \
+    --with-tk-config=/usr/lib64/tkConfig.sh \
+    --enable-prebuilt-html \
+    --with-blas=flexiblas \
+    --with-lapack=flexiblas"
+
+# Make sure that patching Java does not break R.
+# R's default JAVA_HOME path includes the exact Java version on CentOS/RHEL, which
+# requires users to run `R CMD javareconf` even on minor/patch upgrades. Use the
+# major version symlink to avoid this.
+# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Java-support
+# https://solutions.posit.co/envs-pkgs/using-rjava/
+ENV JAVA_HOME=/usr/lib/jvm/jre-11-openjdk
+
+# R 3.x requires PCRE2 for Pango support on RHEL 9
+ENV INCLUDE_PCRE2_IN_R_3 yes
+
+COPY package.fedora-38 /package.sh
+COPY build.sh .
+COPY patches /patches
+ENTRYPOINT ./build.sh
--- a/builder/docker-compose.yml
+++ b/builder/docker-compose.yml
@ -107,3 +107,27 @@ services:
    image: r-builds:opensuse-154
    volumes:
      - ./integration/tmp:/tmp/output
+  fedora-37:
+    command: ./build.sh
+    environment:
+      - R_VERSION=${R_VERSION}
+      - R_INSTALL_PATH=${R_INSTALL_PATH}
+      - LOCAL_STORE=/tmp/output
+    build:
+      context: .
+      dockerfile: Dockerfile.fedora-37
+    image: r-builds:fedora-37
+    volumes:
+      - ./integration/tmp:/tmp/output
+  fedora-38:
+    command: ./build.sh
+    environment:
+      - R_VERSION=${R_VERSION}
+      - R_INSTALL_PATH=${R_INSTALL_PATH}
+      - LOCAL_STORE=/tmp/output
+    build:
+      context: .
+      dockerfile: Dockerfile.fedora-38
+    image: r-builds:fedora-38
+    volumes:
+      - ./integration/tmp:/tmp/output
--- a/builder/package.fedora-37
+++ b/builder/package.fedora-37
@ -0,0 +1,74 @@
+#!/bin/bash
+
+if [[ ! -d /tmp/output/${OS_IDENTIFIER} ]]; then
+  mkdir -p "/tmp/output/${OS_IDENTIFIER}"
+fi
+
+# R 3.x requires PCRE1. On RHEL 9, R 3.x also requires PCRE2 for Pango support.
+pcre_libs='- pcre2-devel'
+if [[ "${R_VERSION}" =~ ^3 ]]; then
+  pcre_libs='- pcre2-devel
+- pcre-devel'
+fi
+
+blas_lib='flexiblas-devel'
+
+# Create postremove script to remove empty directories, as nFPM doesn't include them in the RPM files.
+cat <<EOF >> /after-remove.sh
+if [ -d ${R_INSTALL_PATH} ]; then
+  rm -r ${R_INSTALL_PATH}
+fi
+EOF
+
+scripts="scripts:
+  postremove: /after-remove.sh
+"
+
+if [ "$(arch)" == "aarch64" ]; then echo arm64; else echo amd64; fi > /tmp/arch
+
+cat <<EOF > /tmp/nfpm.yml
+name: R-${R_VERSION}
+version: 1
+version_schema: none
+arch: $(cat /tmp/arch)
+release: 1
+maintainer: Posit Software, PBC <https://github.com/rstudio/r-builds>
+description: |
+  GNU R statistical computation and graphics system
+vendor: Posit Software, PBC
+homepage: https://www.r-project.org
+license: GPLv2+
+depends:
+- bzip2-devel
+- gcc
+- gcc-c++
+- gcc-gfortran
+- libcurl-devel
+- libicu-devel
+- libSM
+- libtiff
+- libXmu
+- libXt
+- make
+- ${blas_lib}
+- pango
+${pcre_libs}
+- tcl
+- tk
+- unzip
+- which
+- xz-devel
+- zip
+- zlib-devel
+contents:
+- src: ${R_INSTALL_PATH}
+  dst: ${R_INSTALL_PATH}
+${scripts}
+EOF
+
+nfpm package \
+  -f /tmp/nfpm.yml \
+  -p rpm \
+  -t "/tmp/output/${OS_IDENTIFIER}"
+
+export PKG_FILE=$(ls /tmp/output/${OS_IDENTIFIER}/R-${R_VERSION}*.rpm | head -1)
--- a/builder/package.fedora-38
+++ b/builder/package.fedora-38
@ -0,0 +1,74 @@
+#!/bin/bash
+
+if [[ ! -d /tmp/output/${OS_IDENTIFIER} ]]; then
+  mkdir -p "/tmp/output/${OS_IDENTIFIER}"
+fi
+
+# R 3.x requires PCRE1. On RHEL 9, R 3.x also requires PCRE2 for Pango support.
+pcre_libs='- pcre2-devel'
+if [[ "${R_VERSION}" =~ ^3 ]]; then
+  pcre_libs='- pcre2-devel
+- pcre-devel'
+fi
+
+blas_lib='flexiblas-devel'
+
+# Create postremove script to remove empty directories, as nFPM doesn't include them in the RPM files.
+cat <<EOF >> /after-remove.sh
+if [ -d ${R_INSTALL_PATH} ]; then
+  rm -r ${R_INSTALL_PATH}
+fi
+EOF
+
+scripts="scripts:
+  postremove: /after-remove.sh
+"
+
+if [ "$(arch)" == "aarch64" ]; then echo arm64; else echo amd64; fi > /tmp/arch
+
+cat <<EOF > /tmp/nfpm.yml
+name: R-${R_VERSION}
+version: 1
+version_schema: none
+arch: $(cat /tmp/arch)
+release: 1
+maintainer: Posit Software, PBC <https://github.com/rstudio/r-builds>
+description: |
+  GNU R statistical computation and graphics system
+vendor: Posit Software, PBC
+homepage: https://www.r-project.org
+license: GPLv2+
+depends:
+- bzip2-devel
+- gcc
+- gcc-c++
+- gcc-gfortran
+- libcurl-devel
+- libicu-devel
+- libSM
+- libtiff
+- libXmu
+- libXt
+- make
+- ${blas_lib}
+- pango
+${pcre_libs}
+- tcl
+- tk
+- unzip
+- which
+- xz-devel
+- zip
+- zlib-devel
+contents:
+- src: ${R_INSTALL_PATH}
+  dst: ${R_INSTALL_PATH}
+${scripts}
+EOF
+
+nfpm package \
+  -f /tmp/nfpm.yml \
+  -p rpm \
+  -t "/tmp/output/${OS_IDENTIFIER}"
+
+export PKG_FILE=$(ls /tmp/output/${OS_IDENTIFIER}/R-${R_VERSION}*.rpm | head -1)
--- a/install.sh
+++ b/install.sh
@ -52,10 +52,15 @@ detect_os () {
  then
   distro="LEAP12"
  fi
-  if [[ -f /etc/centos-release || -f /etc/redhat-release ]]
+  if [[ -f /etc/centos-release || -f /etc/redhat-release || -f /etc/fedora-release  ]]
  then
+    if [[ -f /etc/fedora-release ]]
+    then
+      distro="Fedora"
+    else
      distro="RedHat"
    fi
+  fi
  if [[ $(cat /etc/os-release | grep -e "^CPE_NAME\=*" | cut -f 2 -d '=') =~ cpe:/o:suse:sles:12 ]]
  then
    distro="SLES12"
@ -94,11 +99,11 @@ detect_os () {
 # Returns the OS version
 detect_os_version () {
  os=$1
-  if [[ "${os}" =~ ^(RedHat|Alma|Rocky)$ ]]; then
+  if [[ "${os}" =~ ^(RedHat|Alma|Rocky|Fedora)$ ]]; then
    # Get the major version. /etc/redhat-release is used if /etc/os-release isn't available,
    # e.g., on CentOS/RHEL 6.
    if [[ -f /etc/os-release ]]; then
-      cat /etc/os-release | grep VERSION_ID= | sed -E 's/VERSION_ID="([0-9.]*)"/\1/' | cut -d '.' -f 1
+      cat /etc/os-release | grep VERSION_ID= | sed -E 's/VERSION_ID="?([0-9.]*)"?/\1/' | cut -d '.' -f 1
    elif [[ -f /etc/redhat-release ]]; then
      cat /etc/redhat-release | sed -E 's/[^0-9]+([0-9.]+)[^0-9]*/\1/' | cut -d '.' -f 1
    fi
@ -119,7 +124,7 @@ detect_os_version () {
 detect_installer_type () {
  os=$1
  case $os in
-    "RedHat" | "CentOS" | "LEAP12" | "LEAP15" | "SLES12" | "SLES15" | "Amazon" | "Alma" | "Rocky")
+    "RedHat" | "Fedora" | "CentOS" | "LEAP12" | "LEAP15" | "SLES12" | "SLES15" | "Amazon" | "Alma" | "Rocky")
      echo "rpm"
      ;;
    "Ubuntu" | "Debian")
@ -160,7 +165,7 @@ download_name () {
      ;;
  esac
  case $os in
-    "RedHat" | "CentOS" | "Amazon" | "Alma" | "Rocky")
+    "RedHat" | "Fedora" | "CentOS" | "Amazon" | "Alma" | "Rocky")
      echo "R-${version}-1-1.${rpm_arch}.rpm"
      ;;
    "Ubuntu" | "Debian")
@ -185,6 +190,9 @@ download_url () {
  else

    case $os in
+      "Fedora")
+        echo "${CDN_URL}/fedora-${ver}/pkgs/${name}"
+        ;;
      "RedHat" | "CentOS" | "Amazon" | "Alma" | "Rocky")
        if [ "${ver}" -ge 9 ]; then
          echo "${CDN_URL}/rhel-${ver}/pkgs/${name}"
@ -304,7 +312,7 @@ install_rpm () {
      yes="-y"
  fi
  case $os in
-    "RedHat" | "CentOS" | "Amazon" | "Alma" | "Rocky")
+    "RedHat" | "Fedora" | "CentOS" | "Amazon" | "Alma" | "Rocky")
      if ! has_sudo "yum"; then
        echo "Must have sudo privileges to run yum"
        exit 1
@ -333,6 +341,8 @@ install_pre () {
  ver=$2

  case $os in
+    "Fedora")
+      ;;
    "RedHat" | "CentOS" | "Alma" | "Rocky")
      install_epel "${os}" "${ver}"
      ;;
--- a/serverless-resources.yml
+++ b/serverless-resources.yml
@ -257,6 +257,34 @@ rBuildsBatchJobDefinitionOpensuse154:
      Image: "#{AWS::AccountId}.dkr.ecr.#{AWS::Region}.amazonaws.com/r-builds:opensuse-154"
    Timeout:
      AttemptDurationSeconds: 7200
+rBuildsBatchJobDefinitionFedora37:
+  Type: AWS::Batch::JobDefinition
+  Properties:
+    Type: container
+    ContainerProperties:
+      Command:
+        - ./build.sh
+      Vcpus: 4
+      Memory: 4096
+      JobRoleArn:
+        "Fn::GetAtt": [ rBuildsEcsTaskIamRole, Arn ]
+      Image: "#{AWS::AccountId}.dkr.ecr.#{AWS::Region}.amazonaws.com/r-builds:fedora-37"
+    Timeout:
+      AttemptDurationSeconds: 7200
+rBuildsBatchJobDefinitionFedora38:
+  Type: AWS::Batch::JobDefinition
+  Properties:
+    Type: container
+    ContainerProperties:
+      Command:
+        - ./build.sh
+      Vcpus: 4
+      Memory: 4096
+      JobRoleArn:
+        "Fn::GetAtt": [ rBuildsEcsTaskIamRole, Arn ]
+      Image: "#{AWS::AccountId}.dkr.ecr.#{AWS::Region}.amazonaws.com/r-builds:fedora-38"
+    Timeout:
+      AttemptDurationSeconds: 7200

 # step function cloudwatch event trigger resources
 rBuildsEventRuleIamRole:
--- a/serverless.yml
+++ b/serverless.yml
@ -63,7 +63,11 @@ provider:
      Ref: rBuildsBatchJobDefinitionRhel9
    JOB_DEFINITION_ARN_opensuse_154:
      Ref: rBuildsBatchJobDefinitionOpensuse154
-    SUPPORTED_PLATFORMS: ubuntu-2004,ubuntu-2204,debian-10,debian-11,debian-12,centos-7,centos-8,rhel-9,opensuse-154
+    JOB_DEFINITION_ARN_fedora_37:
+      Ref: rBuildsBatchJobDefinitionFedora37
+    JOB_DEFINITION_ARN_fedora_38:
+      Ref: rBuildsBatchJobDefinitionFedora38
+    SUPPORTED_PLATFORMS: ubuntu-2004,ubuntu-2204,debian-10,debian-11,debian-12,centos-7,centos-8,rhel-9,opensuse-154,fedora-37,fedora-38

 functions:
  queueBuilds:
--- a/test/docker-compose.yml
+++ b/test/docker-compose.yml
@ -71,3 +71,19 @@ services:
      - R_VERSION=${R_VERSION}
    volumes:
      - ../:/r-builds
+  fedora-37:
+    image: fedora:37
+    command: /r-builds/test/test-yum.sh
+    environment:
+      - OS_IDENTIFIER=fedora-37
+      - R_VERSION=${R_VERSION}
+    volumes:
+      - ../:/r-builds
+  fedora-38:
+    image: fedora:38
+    command: /r-builds/test/test-yum.sh
+    environment:
+      - OS_IDENTIFIER=fedora-38
+      - R_VERSION=${R_VERSION}
+    volumes:
+      - ../:/r-builds