Add R builds for RHEL 9
This commit is contained in:
Greg Lin
parent
b863122cd4
commit
768316ab6f
3 changed files with 215 additions and 8 deletions
90
builder/Dockerfile.rhel-9
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90
builder/Dockerfile.rhel-9
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FROM rockylinux:9
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ENV OS_IDENTIFIER rhel-9
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RUN dnf -y upgrade \
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&& dnf -y install dnf-plugins-core \
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&& dnf config-manager --set-enabled crb \
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&& dnf install -y epel-release \
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&& dnf -y install \
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autoconf \
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automake \
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bzip2-devel \
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cairo-devel \
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gcc-c++ \
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gcc-gfortran \
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java-11-openjdk-devel \
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libICE-devel \
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libSM-devel \
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libX11-devel \
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libXmu-devel \
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libXt-devel \
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libcurl-devel \
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libicu-devel \
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libjpeg-devel \
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libpng-devel \
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libtiff-devel \
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libtool \
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make \
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ncurses-devel \
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pango-devel \
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pcre-devel \
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pcre2-devel \
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readline-devel \
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rpm-build \
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ruby \
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ruby-devel \
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tcl-devel \
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tex \
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texinfo-tex \
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texlive-collection-latexrecommended \
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tk-devel \
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unzip \
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valgrind-devel \
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which \
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wget \
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xz-devel \
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zlib-devel \
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&& dnf clean all
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# Install AWS CLI
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RUN curl "https://awscli.amazonaws.com/awscli-exe-linux-x86_64.zip" -o "awscliv2.zip" && \
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unzip awscliv2.zip && \
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./aws/install && \
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rm -rf aws awscliv2.zip
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RUN gem install fpm
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RUN chmod 0777 /opt
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# Configure flags for RHEL 9 that don't use the defaults in build.sh
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ENV CONFIGURE_OPTIONS="\
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--enable-R-shlib \
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--with-tcltk \
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--enable-memory-profiling \
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--with-x \
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--with-system-valgrind-headers \
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--with-tcl-config=/usr/lib64/tclConfig.sh \
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--with-tk-config=/usr/lib64/tkConfig.sh \
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--enable-prebuilt-html"
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# RHEL 9 doesn't have the inconsolata font, so override the defaults.
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# This may be removed if RHEL ever adds the texlive-inconsolata package from Fedora.
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# Or check `dnf provides '*/inconsolata.sty'` for a package that provides it.
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# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Making-the-manuals
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ENV R_RD4PDF="times,hyper"
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# Make sure that patching Java does not break R.
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# R's default JAVA_HOME path includes the exact Java version on CentOS/RHEL, which
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# requires users to run `R CMD javareconf` even on minor/patch upgrades. Use the
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# major version symlink to avoid this.
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# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Java-support
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# https://solutions.rstudio.com/r/using-rjava/
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ENV JAVA_HOME=/usr/lib/jvm/jre-11-openjdk
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# R 3.x requires PCRE2 for Pango support on RHEL 9
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ENV INCLUDE_PCRE2_IN_R_3 yes
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COPY package.rhel-9 /package.sh
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COPY build.sh .
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ENTRYPOINT ./build.sh
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@ -76,6 +76,17 @@ services:
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image: r-builds:centos-8
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volumes:
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- ./integration/tmp:/tmp/output
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rhel-9:
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command: ./build.sh
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environment:
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- R_VERSION=${R_VERSION}
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- LOCAL_STORE=/tmp/output
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build:
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context: .
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dockerfile: Dockerfile.rhel-9
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image: r-builds:rhel-9
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volumes:
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- ./integration/tmp:/tmp/output
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opensuse-153:
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command: ./build.sh
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environment:
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60
builder/package.rhel-9
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60
builder/package.rhel-9
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if [[ ! -d /tmp/output/rhel-9 ]]; then
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mkdir -p /tmp/output/rhel-9
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fi
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# R 3.x requires PCRE1
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pcre_lib='pcre2-devel'
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if [[ "${R_VERSION}" =~ ^3 ]]; then
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pcre_lib='pcre-devel'
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fi
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# Create post-install script required for OpenBLAS
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cat <<EOF >> /post-install.sh
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mv /opt/R/${R_VERSION}/lib/R/lib/libRblas.so /opt/R/${R_VERSION}/lib/R/lib/libRblas.so.keep
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ln -s /usr/lib64/libopenblasp.so /opt/R/${R_VERSION}/lib/R/lib/libRblas.so
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EOF
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# Create after-remove script to remove internal BLAS
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cat <<EOF >> /after-remove.sh
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if [ -d /opt/R/${R_VERSION} ]; then
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rm -r /opt/R/${R_VERSION}
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fi
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EOF
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fpm \
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-s dir \
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-t rpm \
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-v 1 \
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-n "R-${R_VERSION}" \
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--vendor "RStudio, PBC" \
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--url "https://www.r-project.org" \
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--description "GNU R statistical computation and graphics system" \
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--maintainer "RStudio, PBC <https://github.com/rstudio/r-builds>" \
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--license "GPLv2+" \
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--after-install /post-install.sh \
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--after-remove /after-remove.sh \
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-p /tmp/output/rhel-9/ \
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-d bzip2-devel \
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-d gcc \
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-d gcc-c++ \
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-d gcc-gfortran \
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-d libcurl-devel \
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-d libicu-devel \
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-d libSM \
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-d libtiff \
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-d libXmu \
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-d libXt \
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-d make \
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-d openblas-devel \
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-d pango \
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-d ${pcre_lib} \
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-d tcl \
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-d tk \
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-d unzip \
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-d which \
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-d xz-devel \
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-d zip \
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-d zlib-devel \
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"/opt/R/${R_VERSION}"
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export PKG_FILE=$(ls /tmp/output/rhel-9/R-${R_VERSION}*.rpm | head -1)
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