Attempt at adding builds for Fedora 37 and 38
This commit is contained in:
Colin Rundel
parent
03dbd456d4
commit
6c9247cfea
10 changed files with 498 additions and 2 deletions
2
Makefile
2
Makefile
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@ -1,4 +1,4 @@
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PLATFORMS := ubuntu-2004 ubuntu-2204 debian-10 debian-11 debian-12 centos-7 centos-8 rhel-9 opensuse-154
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PLATFORMS := ubuntu-2004 ubuntu-2204 debian-10 debian-11 debian-12 centos-7 centos-8 rhel-9 opensuse-154 fedora-37 fedora-38
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SLS_BINARY ?= ./node_modules/serverless/bin/serverless.js
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SLS_BINARY ?= ./node_modules/serverless/bin/serverless.js
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deps:
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deps:
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20
README.md
20
README.md
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@ -25,6 +25,7 @@ R binaries are built for the following Linux operating systems:
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- Red Hat Enterprise Linux 7, 8, 9
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- Red Hat Enterprise Linux 7, 8, 9
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- openSUSE 15.4
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- openSUSE 15.4
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- SUSE Linux Enterprise 15 SP4
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- SUSE Linux Enterprise 15 SP4
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- Fedora 37, 38
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Operating systems are supported until their vendor end-of-support dates, which
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Operating systems are supported until their vendor end-of-support dates, which
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can be found on the [Posit Platform Support](https://posit.co/about/platform-support/)
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can be found on the [Posit Platform Support](https://posit.co/about/platform-support/)
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@ -146,6 +147,25 @@ Then install the package:
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sudo zypper --no-gpg-checks install R-${R_VERSION}-1-1.x86_64.rpm
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sudo zypper --no-gpg-checks install R-${R_VERSION}-1-1.x86_64.rpm
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```
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```
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Download the deb package:
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```bash
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# Debian 10
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curl -O https://cdn.posit.co/r/fedora-37/pkgs/r-${R_VERSION}_1_amd64.rpm
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# Debian 11
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curl -O https://cdn.posit.co/r/fedora-38/pkgs/r-${R_VERSION}_1_amd64.rpm
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# Debian 12
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curl -O https://cdn.posit.co/r/debian-12/pkgs/r-${R_VERSION}_1_amd64.deb
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```
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Then install the package:
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```bash
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sudo dnf install r-${R_VERSION}_1_amd64.rpm
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```
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### Verify R installation
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### Verify R installation
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Test that R was successfully installed by running:
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Test that R was successfully installed by running:
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86
builder/Dockerfile.fedora-37
Normal file
86
builder/Dockerfile.fedora-37
Normal file
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@ -0,0 +1,86 @@
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FROM fedora:37
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ENV OS_IDENTIFIER fedora-37
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RUN dnf -y upgrade \
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&& dnf -y install dnf-plugins-core \
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&& dnf -y install \
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autoconf \
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automake \
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bzip2-devel \
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cairo-devel \
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flexiblas-devel \
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gcc-c++ \
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gcc-gfortran \
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java-11-openjdk-devel \
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libICE-devel \
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libSM-devel \
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libX11-devel \
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libXmu-devel \
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libXt-devel \
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libcurl-devel \
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libicu-devel \
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libjpeg-devel \
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libpng-devel \
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libtiff-devel \
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libtool \
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make \
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ncurses-devel \
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pango-devel \
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pcre-devel \
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pcre2-devel \
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readline-devel \
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rpm-build \
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tcl-devel \
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tex \
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texinfo-tex \
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texlive-collection-latexrecommended \
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tk-devel \
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unzip \
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valgrind-devel \
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which \
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wget \
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xz-devel \
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zlib-devel \
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&& dnf clean all
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# Install AWS CLI
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RUN curl "https://awscli.amazonaws.com/awscli-exe-linux-$(uname -m).zip" -o "awscliv2.zip" && \
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unzip awscliv2.zip && \
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./aws/install && \
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rm -rf aws awscliv2.zip
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RUN if [ "$(arch)" == "aarch64" ]; then echo arm64; else echo amd64; fi > /tmp/arch
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RUN curl -LO "https://github.com/goreleaser/nfpm/releases/download/v2.18.1/nfpm_$(cat /tmp/arch).rpm" && \
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dnf install -y "nfpm_$(cat /tmp/arch).rpm" && \
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rm "nfpm_$(cat /tmp/arch).rpm"
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RUN chmod 0777 /opt
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# Configure flags for RHEL 9 that don't use the defaults in build.sh
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ENV CONFIGURE_OPTIONS="\
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--enable-R-shlib \
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--with-tcltk \
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--enable-memory-profiling \
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--with-x \
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--with-system-valgrind-headers \
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--with-tcl-config=/usr/lib64/tclConfig.sh \
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--with-tk-config=/usr/lib64/tkConfig.sh \
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--enable-prebuilt-html"
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# Make sure that patching Java does not break R.
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# R's default JAVA_HOME path includes the exact Java version on CentOS/RHEL, which
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# requires users to run `R CMD javareconf` even on minor/patch upgrades. Use the
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# major version symlink to avoid this.
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# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Java-support
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# https://solutions.posit.co/envs-pkgs/using-rjava/
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ENV JAVA_HOME=/usr/lib/jvm/jre-11-openjdk
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# R 3.x requires PCRE2 for Pango support on RHEL 9
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ENV INCLUDE_PCRE2_IN_R_3 yes
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COPY package.fedora-37 /package.sh
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COPY build.sh .
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COPY patches /patches
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ENTRYPOINT ./build.sh
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86
builder/Dockerfile.fedora-38
Normal file
86
builder/Dockerfile.fedora-38
Normal file
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@ -0,0 +1,86 @@
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FROM fedora:38
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ENV OS_IDENTIFIER fedora-38
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RUN dnf -y upgrade \
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&& dnf -y install dnf-plugins-core \
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&& dnf -y install \
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autoconf \
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automake \
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bzip2-devel \
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cairo-devel \
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flexiblas-devel \
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gcc-c++ \
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gcc-gfortran \
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java-11-openjdk-devel \
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libICE-devel \
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libSM-devel \
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libX11-devel \
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libXmu-devel \
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libXt-devel \
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libcurl-devel \
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libicu-devel \
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libjpeg-devel \
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libpng-devel \
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libtiff-devel \
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libtool \
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make \
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ncurses-devel \
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pango-devel \
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pcre-devel \
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pcre2-devel \
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readline-devel \
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rpm-build \
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tcl-devel \
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tex \
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texinfo-tex \
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texlive-collection-latexrecommended \
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tk-devel \
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unzip \
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valgrind-devel \
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which \
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wget \
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xz-devel \
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zlib-devel \
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&& dnf clean all
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# Install AWS CLI
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RUN curl "https://awscli.amazonaws.com/awscli-exe-linux-$(uname -m).zip" -o "awscliv2.zip" && \
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unzip awscliv2.zip && \
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./aws/install && \
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rm -rf aws awscliv2.zip
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RUN if [ "$(arch)" == "aarch64" ]; then echo arm64; else echo amd64; fi > /tmp/arch
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RUN curl -LO "https://github.com/goreleaser/nfpm/releases/download/v2.18.1/nfpm_$(cat /tmp/arch).rpm" && \
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dnf install -y "nfpm_$(cat /tmp/arch).rpm" && \
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rm "nfpm_$(cat /tmp/arch).rpm"
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RUN chmod 0777 /opt
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# Configure flags for RHEL 9 that don't use the defaults in build.sh
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ENV CONFIGURE_OPTIONS="\
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--enable-R-shlib \
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--with-tcltk \
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--enable-memory-profiling \
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--with-x \
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--with-system-valgrind-headers \
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--with-tcl-config=/usr/lib64/tclConfig.sh \
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--with-tk-config=/usr/lib64/tkConfig.sh \
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--enable-prebuilt-html"
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# Make sure that patching Java does not break R.
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# R's default JAVA_HOME path includes the exact Java version on CentOS/RHEL, which
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# requires users to run `R CMD javareconf` even on minor/patch upgrades. Use the
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# major version symlink to avoid this.
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# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Java-support
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# https://solutions.posit.co/envs-pkgs/using-rjava/
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ENV JAVA_HOME=/usr/lib/jvm/jre-11-openjdk
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# R 3.x requires PCRE2 for Pango support on RHEL 9
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ENV INCLUDE_PCRE2_IN_R_3 yes
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COPY package.fedora-38 /package.sh
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COPY build.sh .
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COPY patches /patches
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ENTRYPOINT ./build.sh
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@ -107,3 +107,27 @@ services:
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image: r-builds:opensuse-154
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image: r-builds:opensuse-154
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volumes:
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volumes:
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- ./integration/tmp:/tmp/output
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- ./integration/tmp:/tmp/output
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fedora-37:
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command: ./build.sh
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environment:
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- R_VERSION=${R_VERSION}
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- R_INSTALL_PATH=${R_INSTALL_PATH}
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- LOCAL_STORE=/tmp/output
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build:
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context: .
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dockerfile: Dockerfile.fedora-37
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image: r-builds:fedora-37
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volumes:
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- ./integration/tmp:/tmp/output
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fedora-38:
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command: ./build.sh
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environment:
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- R_VERSION=${R_VERSION}
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- R_INSTALL_PATH=${R_INSTALL_PATH}
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- LOCAL_STORE=/tmp/output
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build:
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context: .
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dockerfile: Dockerfile.fedora-38
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image: r-builds:fedora-38
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volumes:
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- ./integration/tmp:/tmp/output
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116
builder/package.fedora-37
Normal file
116
builder/package.fedora-37
Normal file
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@ -0,0 +1,116 @@
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#!/bin/bash
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if [[ ! -d /tmp/output/${OS_IDENTIFIER} ]]; then
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mkdir -p "/tmp/output/${OS_IDENTIFIER}"
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fi
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# R 3.x requires PCRE1. On RHEL 9, R 3.x also requires PCRE2 for Pango support.
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pcre_libs='- pcre2-devel'
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if [[ "${R_VERSION}" =~ ^3 ]]; then
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pcre_libs='- pcre2-devel
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- pcre-devel'
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fi
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# On RHEL and SUSE, we link R against the internal shared BLAS to make the
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# R binaries more portable and allow users to switch BLAS implementations without
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# having to recompile R. We default to OpenBLAS, but users may prefer other implementations.
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#
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# Binary packages built against the shared BLAS are also more portable and may be used
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# with the default R distributed by RHEL/SUSE, or other R installations using
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# shared BLAS and configured with a different BLAS (such as Microsoft R Open with MKL).
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# This is especially important for Posit Package Manager's binary packages.
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#
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# However, EPEL 9's R now links externally against FlexiBLAS, which provides a
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# native BLAS switching mechanism for Fedora/RHEL. Starting with R 4.3.0, we also
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# link to external FlexiBLAS for compatibility.
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# https://fedoraproject.org/wiki/Changes/FlexiBLAS_as_BLAS/LAPACK_manager
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#
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# On Ubuntu/Debian, we link R against the external BLAS instead (--with-blas/--with-lapack),
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# as those distributions use the alternatives system to swap BLAS libraries at runtime.
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# The default R distributions on Ubuntu/Debian use the external BLAS, so we do as well
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# for portability.
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#
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# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Shared-BLAS
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if [[ "$("${R_INSTALL_PATH}/bin/R" CMD config BLAS_LIBS)" == "-lflexiblas" ]]; then
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blas_lib='flexiblas-devel'
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# Create postremove script to remove empty directories, as nFPM doesn't include them in the RPM files.
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cat <<EOF >> /after-remove.sh
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if [ -d ${R_INSTALL_PATH} ]; then
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rm -r ${R_INSTALL_PATH}
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fi
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EOF
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scripts="scripts:
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postremove: /after-remove.sh
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"
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else
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blas_lib='openblas-devel'
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# Create post-install script required for OpenBLAS.
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cat <<EOF >> /post-install.sh
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mv ${R_INSTALL_PATH}/lib/R/lib/libRblas.so ${R_INSTALL_PATH}/lib/R/lib/libRblas.so.keep
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ln -s /usr/lib64/libopenblasp.so ${R_INSTALL_PATH}/lib/R/lib/libRblas.so
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EOF
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# Create after-remove script to remove internal BLAS, which won't be cleaned up automatically.
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cat <<EOF >> /after-remove.sh
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if [ -d ${R_INSTALL_PATH} ]; then
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rm -r ${R_INSTALL_PATH}
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fi
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EOF
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scripts="scripts:
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postinstall: /post-install.sh
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postremove: /after-remove.sh
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"
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fi
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if [ "$(arch)" == "aarch64" ]; then echo arm64; else echo amd64; fi > /tmp/arch
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cat <<EOF > /tmp/nfpm.yml
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name: R-${R_VERSION}
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version: 1
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version_schema: none
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arch: $(cat /tmp/arch)
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release: 1
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maintainer: Posit Software, PBC <https://github.com/rstudio/r-builds>
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description: |
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GNU R statistical computation and graphics system
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vendor: Posit Software, PBC
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homepage: https://www.r-project.org
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license: GPLv2+
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depends:
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- bzip2-devel
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- gcc
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- gcc-c++
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- gcc-gfortran
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- libcurl-devel
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- libicu-devel
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- libSM
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- libtiff
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- libXmu
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- libXt
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- make
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- ${blas_lib}
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- pango
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${pcre_libs}
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- tcl
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- tk
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- unzip
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- which
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- xz-devel
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- zip
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||||||
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- zlib-devel
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contents:
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- src: ${R_INSTALL_PATH}
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dst: ${R_INSTALL_PATH}
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${scripts}
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EOF
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nfpm package \
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-f /tmp/nfpm.yml \
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-p rpm \
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-t "/tmp/output/${OS_IDENTIFIER}"
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export PKG_FILE=$(ls /tmp/output/${OS_IDENTIFIER}/R-${R_VERSION}*.rpm | head -1)
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116
builder/package.fedora-38
Normal file
116
builder/package.fedora-38
Normal file
|
|
@ -0,0 +1,116 @@
|
||||||
|
#!/bin/bash
|
||||||
|
|
||||||
|
if [[ ! -d /tmp/output/${OS_IDENTIFIER} ]]; then
|
||||||
|
mkdir -p "/tmp/output/${OS_IDENTIFIER}"
|
||||||
|
fi
|
||||||
|
|
||||||
|
# R 3.x requires PCRE1. On RHEL 9, R 3.x also requires PCRE2 for Pango support.
|
||||||
|
pcre_libs='- pcre2-devel'
|
||||||
|
if [[ "${R_VERSION}" =~ ^3 ]]; then
|
||||||
|
pcre_libs='- pcre2-devel
|
||||||
|
- pcre-devel'
|
||||||
|
fi
|
||||||
|
|
||||||
|
# On RHEL and SUSE, we link R against the internal shared BLAS to make the
|
||||||
|
# R binaries more portable and allow users to switch BLAS implementations without
|
||||||
|
# having to recompile R. We default to OpenBLAS, but users may prefer other implementations.
|
||||||
|
#
|
||||||
|
# Binary packages built against the shared BLAS are also more portable and may be used
|
||||||
|
# with the default R distributed by RHEL/SUSE, or other R installations using
|
||||||
|
# shared BLAS and configured with a different BLAS (such as Microsoft R Open with MKL).
|
||||||
|
# This is especially important for Posit Package Manager's binary packages.
|
||||||
|
#
|
||||||
|
# However, EPEL 9's R now links externally against FlexiBLAS, which provides a
|
||||||
|
# native BLAS switching mechanism for Fedora/RHEL. Starting with R 4.3.0, we also
|
||||||
|
# link to external FlexiBLAS for compatibility.
|
||||||
|
# https://fedoraproject.org/wiki/Changes/FlexiBLAS_as_BLAS/LAPACK_manager
|
||||||
|
#
|
||||||
|
# On Ubuntu/Debian, we link R against the external BLAS instead (--with-blas/--with-lapack),
|
||||||
|
# as those distributions use the alternatives system to swap BLAS libraries at runtime.
|
||||||
|
# The default R distributions on Ubuntu/Debian use the external BLAS, so we do as well
|
||||||
|
# for portability.
|
||||||
|
#
|
||||||
|
# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Shared-BLAS
|
||||||
|
if [[ "$("${R_INSTALL_PATH}/bin/R" CMD config BLAS_LIBS)" == "-lflexiblas" ]]; then
|
||||||
|
blas_lib='flexiblas-devel'
|
||||||
|
|
||||||
|
# Create postremove script to remove empty directories, as nFPM doesn't include them in the RPM files.
|
||||||
|
cat <<EOF >> /after-remove.sh
|
||||||
|
if [ -d ${R_INSTALL_PATH} ]; then
|
||||||
|
rm -r ${R_INSTALL_PATH}
|
||||||
|
fi
|
||||||
|
EOF
|
||||||
|
|
||||||
|
scripts="scripts:
|
||||||
|
postremove: /after-remove.sh
|
||||||
|
"
|
||||||
|
else
|
||||||
|
blas_lib='openblas-devel'
|
||||||
|
|
||||||
|
# Create post-install script required for OpenBLAS.
|
||||||
|
cat <<EOF >> /post-install.sh
|
||||||
|
mv ${R_INSTALL_PATH}/lib/R/lib/libRblas.so ${R_INSTALL_PATH}/lib/R/lib/libRblas.so.keep
|
||||||
|
ln -s /usr/lib64/libopenblasp.so ${R_INSTALL_PATH}/lib/R/lib/libRblas.so
|
||||||
|
EOF
|
||||||
|
|
||||||
|
# Create after-remove script to remove internal BLAS, which won't be cleaned up automatically.
|
||||||
|
cat <<EOF >> /after-remove.sh
|
||||||
|
if [ -d ${R_INSTALL_PATH} ]; then
|
||||||
|
rm -r ${R_INSTALL_PATH}
|
||||||
|
fi
|
||||||
|
EOF
|
||||||
|
|
||||||
|
scripts="scripts:
|
||||||
|
postinstall: /post-install.sh
|
||||||
|
postremove: /after-remove.sh
|
||||||
|
"
|
||||||
|
fi
|
||||||
|
|
||||||
|
if [ "$(arch)" == "aarch64" ]; then echo arm64; else echo amd64; fi > /tmp/arch
|
||||||
|
|
||||||
|
cat <<EOF > /tmp/nfpm.yml
|
||||||
|
name: R-${R_VERSION}
|
||||||
|
version: 1
|
||||||
|
version_schema: none
|
||||||
|
arch: $(cat /tmp/arch)
|
||||||
|
release: 1
|
||||||
|
maintainer: Posit Software, PBC <https://github.com/rstudio/r-builds>
|
||||||
|
description: |
|
||||||
|
GNU R statistical computation and graphics system
|
||||||
|
vendor: Posit Software, PBC
|
||||||
|
homepage: https://www.r-project.org
|
||||||
|
license: GPLv2+
|
||||||
|
depends:
|
||||||
|
- bzip2-devel
|
||||||
|
- gcc
|
||||||
|
- gcc-c++
|
||||||
|
- gcc-gfortran
|
||||||
|
- libcurl-devel
|
||||||
|
- libicu-devel
|
||||||
|
- libSM
|
||||||
|
- libtiff
|
||||||
|
- libXmu
|
||||||
|
- libXt
|
||||||
|
- make
|
||||||
|
- ${blas_lib}
|
||||||
|
- pango
|
||||||
|
${pcre_libs}
|
||||||
|
- tcl
|
||||||
|
- tk
|
||||||
|
- unzip
|
||||||
|
- which
|
||||||
|
- xz-devel
|
||||||
|
- zip
|
||||||
|
- zlib-devel
|
||||||
|
contents:
|
||||||
|
- src: ${R_INSTALL_PATH}
|
||||||
|
dst: ${R_INSTALL_PATH}
|
||||||
|
${scripts}
|
||||||
|
EOF
|
||||||
|
|
||||||
|
nfpm package \
|
||||||
|
-f /tmp/nfpm.yml \
|
||||||
|
-p rpm \
|
||||||
|
-t "/tmp/output/${OS_IDENTIFIER}"
|
||||||
|
|
||||||
|
export PKG_FILE=$(ls /tmp/output/${OS_IDENTIFIER}/R-${R_VERSION}*.rpm | head -1)
|
||||||
|
|
@ -257,6 +257,34 @@ rBuildsBatchJobDefinitionOpensuse154:
|
||||||
Image: "#{AWS::AccountId}.dkr.ecr.#{AWS::Region}.amazonaws.com/r-builds:opensuse-154"
|
Image: "#{AWS::AccountId}.dkr.ecr.#{AWS::Region}.amazonaws.com/r-builds:opensuse-154"
|
||||||
Timeout:
|
Timeout:
|
||||||
AttemptDurationSeconds: 7200
|
AttemptDurationSeconds: 7200
|
||||||
|
rBuildsBatchJobDefinitionFedora37:
|
||||||
|
Type: AWS::Batch::JobDefinition
|
||||||
|
Properties:
|
||||||
|
Type: container
|
||||||
|
ContainerProperties:
|
||||||
|
Command:
|
||||||
|
- ./build.sh
|
||||||
|
Vcpus: 4
|
||||||
|
Memory: 4096
|
||||||
|
JobRoleArn:
|
||||||
|
"Fn::GetAtt": [ rBuildsEcsTaskIamRole, Arn ]
|
||||||
|
Image: "#{AWS::AccountId}.dkr.ecr.#{AWS::Region}.amazonaws.com/r-builds:fedora-37"
|
||||||
|
Timeout:
|
||||||
|
AttemptDurationSeconds: 7200
|
||||||
|
rBuildsBatchJobDefinitionFedora38:
|
||||||
|
Type: AWS::Batch::JobDefinition
|
||||||
|
Properties:
|
||||||
|
Type: container
|
||||||
|
ContainerProperties:
|
||||||
|
Command:
|
||||||
|
- ./build.sh
|
||||||
|
Vcpus: 4
|
||||||
|
Memory: 4096
|
||||||
|
JobRoleArn:
|
||||||
|
"Fn::GetAtt": [ rBuildsEcsTaskIamRole, Arn ]
|
||||||
|
Image: "#{AWS::AccountId}.dkr.ecr.#{AWS::Region}.amazonaws.com/r-builds:fedora-38"
|
||||||
|
Timeout:
|
||||||
|
AttemptDurationSeconds: 7200
|
||||||
|
|
||||||
# step function cloudwatch event trigger resources
|
# step function cloudwatch event trigger resources
|
||||||
rBuildsEventRuleIamRole:
|
rBuildsEventRuleIamRole:
|
||||||
|
|
|
||||||
|
|
@ -63,7 +63,11 @@ provider:
|
||||||
Ref: rBuildsBatchJobDefinitionRhel9
|
Ref: rBuildsBatchJobDefinitionRhel9
|
||||||
JOB_DEFINITION_ARN_opensuse_154:
|
JOB_DEFINITION_ARN_opensuse_154:
|
||||||
Ref: rBuildsBatchJobDefinitionOpensuse154
|
Ref: rBuildsBatchJobDefinitionOpensuse154
|
||||||
SUPPORTED_PLATFORMS: ubuntu-2004,ubuntu-2204,debian-10,debian-11,debian-12,centos-7,centos-8,rhel-9,opensuse-154
|
JOB_DEFINITION_ARN_fedora_37:
|
||||||
|
Ref: rBuildsBatchJobDefinitionFedora37
|
||||||
|
JOB_DEFINITION_ARN_fedora_38:
|
||||||
|
Ref: rBuildsBatchJobDefinitionFedora38
|
||||||
|
SUPPORTED_PLATFORMS: ubuntu-2004,ubuntu-2204,debian-10,debian-11,debian-12,centos-7,centos-8,rhel-9,opensuse-154,fedora-37,fedora-38
|
||||||
|
|
||||||
functions:
|
functions:
|
||||||
queueBuilds:
|
queueBuilds:
|
||||||
|
|
|
||||||
|
|
@ -71,3 +71,19 @@ services:
|
||||||
- R_VERSION=${R_VERSION}
|
- R_VERSION=${R_VERSION}
|
||||||
volumes:
|
volumes:
|
||||||
- ../:/r-builds
|
- ../:/r-builds
|
||||||
|
fedora-37:
|
||||||
|
image: fedora:37
|
||||||
|
command: /r-builds/test/test-yum.sh
|
||||||
|
environment:
|
||||||
|
- OS_IDENTIFIER=fedora-37
|
||||||
|
- R_VERSION=${R_VERSION}
|
||||||
|
volumes:
|
||||||
|
- ../:/r-builds
|
||||||
|
fedora-38:
|
||||||
|
image: fedora:38
|
||||||
|
command: /r-builds/test/test-yum.sh
|
||||||
|
environment:
|
||||||
|
- OS_IDENTIFIER=fedora-38
|
||||||
|
- R_VERSION=${R_VERSION}
|
||||||
|
volumes:
|
||||||
|
- ../:/r-builds
|
||||||
|
|
|
||||||
Loading…
Reference in a new issue