Attempt at adding builds for Fedora 37 and 38

Makefile

@@ -1,4 +1,4 @@
-PLATFORMS := ubuntu-2004 ubuntu-2204 debian-10 debian-11 debian-12 centos-7 centos-8 rhel-9 opensuse-154
+PLATFORMS := ubuntu-2004 ubuntu-2204 debian-10 debian-11 debian-12 centos-7 centos-8 rhel-9 opensuse-154 fedora-37 fedora-38
 SLS_BINARY ?= ./node_modules/serverless/bin/serverless.js
 
 deps:

README.md

@@ -25,6 +25,7 @@ R binaries are built for the following Linux operating systems:
 - Red Hat Enterprise Linux 7, 8, 9
 - openSUSE 15.4
 - SUSE Linux Enterprise 15 SP4
+- Fedora 37, 38
 
 Operating systems are supported until their vendor end-of-support dates, which
 can be found on the [Posit Platform Support](https://posit.co/about/platform-support/)
@@ -146,6 +147,25 @@ Then install the package:
 sudo zypper --no-gpg-checks install R-${R_VERSION}-1-1.x86_64.rpm
 ```
 
+Download the deb package:
+```bash
+# Debian 10
+curl -O https://cdn.posit.co/r/fedora-37/pkgs/r-${R_VERSION}_1_amd64.rpm
+
+# Debian 11
+curl -O https://cdn.posit.co/r/fedora-38/pkgs/r-${R_VERSION}_1_amd64.rpm
+
+# Debian 12
+curl -O https://cdn.posit.co/r/debian-12/pkgs/r-${R_VERSION}_1_amd64.deb
+```
+
+Then install the package:
+```bash
+sudo dnf install r-${R_VERSION}_1_amd64.rpm
+```
+
+
+
 ### Verify R installation
 
 Test that R was successfully installed by running:

builder/Dockerfile.fedora-37

@@ -0,0 +1,86 @@
+FROM fedora:37
+
+ENV OS_IDENTIFIER fedora-37
+
+RUN dnf -y upgrade \
+    && dnf -y install dnf-plugins-core \
+    && dnf -y install \
+    autoconf \
+    automake \
+    bzip2-devel \
+    cairo-devel \
+    flexiblas-devel \
+    gcc-c++ \
+    gcc-gfortran \
+    java-11-openjdk-devel \
+    libICE-devel \
+    libSM-devel \
+    libX11-devel \
+    libXmu-devel \
+    libXt-devel \
+    libcurl-devel \
+    libicu-devel \
+    libjpeg-devel \
+    libpng-devel \
+    libtiff-devel \
+    libtool \
+    make \
+    ncurses-devel \
+    pango-devel \
+    pcre-devel \
+    pcre2-devel \
+    readline-devel \
+    rpm-build \
+    tcl-devel \
+    tex \
+    texinfo-tex \
+    texlive-collection-latexrecommended \
+    tk-devel \
+    unzip \
+    valgrind-devel \
+    which \
+    wget \
+    xz-devel \
+    zlib-devel \
+    && dnf clean all
+
+# Install AWS CLI
+RUN curl "https://awscli.amazonaws.com/awscli-exe-linux-$(uname -m).zip" -o "awscliv2.zip" && \
+    unzip awscliv2.zip && \
+    ./aws/install && \
+    rm -rf aws awscliv2.zip
+
+RUN if [ "$(arch)" == "aarch64" ]; then echo arm64; else echo amd64; fi > /tmp/arch
+
+RUN curl -LO "https://github.com/goreleaser/nfpm/releases/download/v2.18.1/nfpm_$(cat /tmp/arch).rpm" && \
+    dnf install -y "nfpm_$(cat /tmp/arch).rpm" && \
+    rm "nfpm_$(cat /tmp/arch).rpm"
+
+RUN chmod 0777 /opt
+
+# Configure flags for RHEL 9 that don't use the defaults in build.sh
+ENV CONFIGURE_OPTIONS="\
+    --enable-R-shlib \
+    --with-tcltk \
+    --enable-memory-profiling \
+    --with-x \
+    --with-system-valgrind-headers \
+    --with-tcl-config=/usr/lib64/tclConfig.sh \
+    --with-tk-config=/usr/lib64/tkConfig.sh \
+    --enable-prebuilt-html"
+
+# Make sure that patching Java does not break R.
+# R's default JAVA_HOME path includes the exact Java version on CentOS/RHEL, which
+# requires users to run `R CMD javareconf` even on minor/patch upgrades. Use the
+# major version symlink to avoid this.
+# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Java-support
+# https://solutions.posit.co/envs-pkgs/using-rjava/
+ENV JAVA_HOME=/usr/lib/jvm/jre-11-openjdk
+
+# R 3.x requires PCRE2 for Pango support on RHEL 9
+ENV INCLUDE_PCRE2_IN_R_3 yes
+
+COPY package.fedora-37 /package.sh
+COPY build.sh .
+COPY patches /patches
+ENTRYPOINT ./build.sh

builder/Dockerfile.fedora-38

@@ -0,0 +1,86 @@
+FROM fedora:38
+
+ENV OS_IDENTIFIER fedora-38
+
+RUN dnf -y upgrade \
+    && dnf -y install dnf-plugins-core \
+    && dnf -y install \
+    autoconf \
+    automake \
+    bzip2-devel \
+    cairo-devel \
+    flexiblas-devel \
+    gcc-c++ \
+    gcc-gfortran \
+    java-11-openjdk-devel \
+    libICE-devel \
+    libSM-devel \
+    libX11-devel \
+    libXmu-devel \
+    libXt-devel \
+    libcurl-devel \
+    libicu-devel \
+    libjpeg-devel \
+    libpng-devel \
+    libtiff-devel \
+    libtool \
+    make \
+    ncurses-devel \
+    pango-devel \
+    pcre-devel \
+    pcre2-devel \
+    readline-devel \
+    rpm-build \
+    tcl-devel \
+    tex \
+    texinfo-tex \
+    texlive-collection-latexrecommended \
+    tk-devel \
+    unzip \
+    valgrind-devel \
+    which \
+    wget \
+    xz-devel \
+    zlib-devel \
+    && dnf clean all
+
+# Install AWS CLI
+RUN curl "https://awscli.amazonaws.com/awscli-exe-linux-$(uname -m).zip" -o "awscliv2.zip" && \
+    unzip awscliv2.zip && \
+    ./aws/install && \
+    rm -rf aws awscliv2.zip
+
+RUN if [ "$(arch)" == "aarch64" ]; then echo arm64; else echo amd64; fi > /tmp/arch
+
+RUN curl -LO "https://github.com/goreleaser/nfpm/releases/download/v2.18.1/nfpm_$(cat /tmp/arch).rpm" && \
+    dnf install -y "nfpm_$(cat /tmp/arch).rpm" && \
+    rm "nfpm_$(cat /tmp/arch).rpm"
+
+RUN chmod 0777 /opt
+
+# Configure flags for RHEL 9 that don't use the defaults in build.sh
+ENV CONFIGURE_OPTIONS="\
+    --enable-R-shlib \
+    --with-tcltk \
+    --enable-memory-profiling \
+    --with-x \
+    --with-system-valgrind-headers \
+    --with-tcl-config=/usr/lib64/tclConfig.sh \
+    --with-tk-config=/usr/lib64/tkConfig.sh \
+    --enable-prebuilt-html"
+
+# Make sure that patching Java does not break R.
+# R's default JAVA_HOME path includes the exact Java version on CentOS/RHEL, which
+# requires users to run `R CMD javareconf` even on minor/patch upgrades. Use the
+# major version symlink to avoid this.
+# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Java-support
+# https://solutions.posit.co/envs-pkgs/using-rjava/
+ENV JAVA_HOME=/usr/lib/jvm/jre-11-openjdk
+
+# R 3.x requires PCRE2 for Pango support on RHEL 9
+ENV INCLUDE_PCRE2_IN_R_3 yes
+
+COPY package.fedora-38 /package.sh
+COPY build.sh .
+COPY patches /patches
+ENTRYPOINT ./build.sh

builder/docker-compose.yml

@@ -107,3 +107,27 @@ services:
     image: r-builds:opensuse-154
     volumes:
       - ./integration/tmp:/tmp/output
+  fedora-37:
+    command: ./build.sh
+    environment:
+      - R_VERSION=${R_VERSION}
+      - R_INSTALL_PATH=${R_INSTALL_PATH}
+      - LOCAL_STORE=/tmp/output
+    build:
+      context: .
+      dockerfile: Dockerfile.fedora-37
+    image: r-builds:fedora-37
+    volumes:
+      - ./integration/tmp:/tmp/output
+  fedora-38:
+    command: ./build.sh
+    environment:
+      - R_VERSION=${R_VERSION}
+      - R_INSTALL_PATH=${R_INSTALL_PATH}
+      - LOCAL_STORE=/tmp/output
+    build:
+      context: .
+      dockerfile: Dockerfile.fedora-38
+    image: r-builds:fedora-38
+    volumes:
+      - ./integration/tmp:/tmp/output

builder/package.fedora-37

@@ -0,0 +1,116 @@
+#!/bin/bash
+
+if [[ ! -d /tmp/output/${OS_IDENTIFIER} ]]; then
+  mkdir -p "/tmp/output/${OS_IDENTIFIER}"
+fi
+
+# R 3.x requires PCRE1. On RHEL 9, R 3.x also requires PCRE2 for Pango support.
+pcre_libs='- pcre2-devel'
+if [[ "${R_VERSION}" =~ ^3 ]]; then
+  pcre_libs='- pcre2-devel
+- pcre-devel'
+fi
+
+# On RHEL and SUSE, we link R against the internal shared BLAS to make the
+# R binaries more portable and allow users to switch BLAS implementations without
+# having to recompile R. We default to OpenBLAS, but users may prefer other implementations.
+# 
+# Binary packages built against the shared BLAS are also more portable and may be used
+# with the default R distributed by RHEL/SUSE, or other R installations using
+# shared BLAS and configured with a different BLAS (such as Microsoft R Open with MKL).
+# This is especially important for Posit Package Manager's binary packages.
+#
+# However, EPEL 9's R now links externally against FlexiBLAS, which provides a
+# native BLAS switching mechanism for Fedora/RHEL. Starting with R 4.3.0, we also
+# link to external FlexiBLAS for compatibility.
+# https://fedoraproject.org/wiki/Changes/FlexiBLAS_as_BLAS/LAPACK_manager
+#
+# On Ubuntu/Debian, we link R against the external BLAS instead (--with-blas/--with-lapack),
+# as those distributions use the alternatives system to swap BLAS libraries at runtime.
+# The default R distributions on Ubuntu/Debian use the external BLAS, so we do as well
+# for portability.
+#
+# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Shared-BLAS
+if [[ "$("${R_INSTALL_PATH}/bin/R" CMD config BLAS_LIBS)" == "-lflexiblas" ]]; then
+  blas_lib='flexiblas-devel'
+
+  # Create postremove script to remove empty directories, as nFPM doesn't include them in the RPM files.
+  cat <<EOF >> /after-remove.sh
+  if [ -d ${R_INSTALL_PATH} ]; then
+    rm -r ${R_INSTALL_PATH}
+  fi
+EOF
+
+  scripts="scripts:
+  postremove: /after-remove.sh
+"
+else
+  blas_lib='openblas-devel'
+
+  # Create post-install script required for OpenBLAS.
+  cat <<EOF >> /post-install.sh
+  mv ${R_INSTALL_PATH}/lib/R/lib/libRblas.so ${R_INSTALL_PATH}/lib/R/lib/libRblas.so.keep
+  ln -s /usr/lib64/libopenblasp.so ${R_INSTALL_PATH}/lib/R/lib/libRblas.so
+EOF
+
+  # Create after-remove script to remove internal BLAS, which won't be cleaned up automatically.
+  cat <<EOF >> /after-remove.sh
+  if [ -d ${R_INSTALL_PATH} ]; then
+    rm -r ${R_INSTALL_PATH}
+  fi
+EOF
+
+  scripts="scripts:
+  postinstall: /post-install.sh
+  postremove: /after-remove.sh
+"
+fi
+
+if [ "$(arch)" == "aarch64" ]; then echo arm64; else echo amd64; fi > /tmp/arch
+
+cat <<EOF > /tmp/nfpm.yml
+name: R-${R_VERSION}
+version: 1
+version_schema: none
+arch: $(cat /tmp/arch)
+release: 1
+maintainer: Posit Software, PBC <https://github.com/rstudio/r-builds>
+description: |
+  GNU R statistical computation and graphics system
+vendor: Posit Software, PBC
+homepage: https://www.r-project.org
+license: GPLv2+
+depends:
+- bzip2-devel
+- gcc
+- gcc-c++
+- gcc-gfortran
+- libcurl-devel
+- libicu-devel
+- libSM
+- libtiff
+- libXmu
+- libXt
+- make
+- ${blas_lib}
+- pango
+${pcre_libs}
+- tcl
+- tk
+- unzip
+- which
+- xz-devel
+- zip
+- zlib-devel
+contents:
+- src: ${R_INSTALL_PATH}
+  dst: ${R_INSTALL_PATH}
+${scripts}
+EOF
+
+nfpm package \
+  -f /tmp/nfpm.yml \
+  -p rpm \
+  -t "/tmp/output/${OS_IDENTIFIER}"
+
+export PKG_FILE=$(ls /tmp/output/${OS_IDENTIFIER}/R-${R_VERSION}*.rpm | head -1)

builder/package.fedora-38

@@ -0,0 +1,116 @@
+#!/bin/bash
+
+if [[ ! -d /tmp/output/${OS_IDENTIFIER} ]]; then
+  mkdir -p "/tmp/output/${OS_IDENTIFIER}"
+fi
+
+# R 3.x requires PCRE1. On RHEL 9, R 3.x also requires PCRE2 for Pango support.
+pcre_libs='- pcre2-devel'
+if [[ "${R_VERSION}" =~ ^3 ]]; then
+  pcre_libs='- pcre2-devel
+- pcre-devel'
+fi
+
+# On RHEL and SUSE, we link R against the internal shared BLAS to make the
+# R binaries more portable and allow users to switch BLAS implementations without
+# having to recompile R. We default to OpenBLAS, but users may prefer other implementations.
+# 
+# Binary packages built against the shared BLAS are also more portable and may be used
+# with the default R distributed by RHEL/SUSE, or other R installations using
+# shared BLAS and configured with a different BLAS (such as Microsoft R Open with MKL).
+# This is especially important for Posit Package Manager's binary packages.
+#
+# However, EPEL 9's R now links externally against FlexiBLAS, which provides a
+# native BLAS switching mechanism for Fedora/RHEL. Starting with R 4.3.0, we also
+# link to external FlexiBLAS for compatibility.
+# https://fedoraproject.org/wiki/Changes/FlexiBLAS_as_BLAS/LAPACK_manager
+#
+# On Ubuntu/Debian, we link R against the external BLAS instead (--with-blas/--with-lapack),
+# as those distributions use the alternatives system to swap BLAS libraries at runtime.
+# The default R distributions on Ubuntu/Debian use the external BLAS, so we do as well
+# for portability.
+#
+# https://cran.r-project.org/doc/manuals/r-release/R-admin.html#Shared-BLAS
+if [[ "$("${R_INSTALL_PATH}/bin/R" CMD config BLAS_LIBS)" == "-lflexiblas" ]]; then
+  blas_lib='flexiblas-devel'
+
+  # Create postremove script to remove empty directories, as nFPM doesn't include them in the RPM files.
+  cat <<EOF >> /after-remove.sh
+  if [ -d ${R_INSTALL_PATH} ]; then
+    rm -r ${R_INSTALL_PATH}
+  fi
+EOF
+
+  scripts="scripts:
+  postremove: /after-remove.sh
+"
+else
+  blas_lib='openblas-devel'
+
+  # Create post-install script required for OpenBLAS.
+  cat <<EOF >> /post-install.sh
+  mv ${R_INSTALL_PATH}/lib/R/lib/libRblas.so ${R_INSTALL_PATH}/lib/R/lib/libRblas.so.keep
+  ln -s /usr/lib64/libopenblasp.so ${R_INSTALL_PATH}/lib/R/lib/libRblas.so
+EOF
+
+  # Create after-remove script to remove internal BLAS, which won't be cleaned up automatically.
+  cat <<EOF >> /after-remove.sh
+  if [ -d ${R_INSTALL_PATH} ]; then
+    rm -r ${R_INSTALL_PATH}
+  fi
+EOF
+
+  scripts="scripts:
+  postinstall: /post-install.sh
+  postremove: /after-remove.sh
+"
+fi
+
+if [ "$(arch)" == "aarch64" ]; then echo arm64; else echo amd64; fi > /tmp/arch
+
+cat <<EOF > /tmp/nfpm.yml
+name: R-${R_VERSION}
+version: 1
+version_schema: none
+arch: $(cat /tmp/arch)
+release: 1
+maintainer: Posit Software, PBC <https://github.com/rstudio/r-builds>
+description: |
+  GNU R statistical computation and graphics system
+vendor: Posit Software, PBC
+homepage: https://www.r-project.org
+license: GPLv2+
+depends:
+- bzip2-devel
+- gcc
+- gcc-c++
+- gcc-gfortran
+- libcurl-devel
+- libicu-devel
+- libSM
+- libtiff
+- libXmu
+- libXt
+- make
+- ${blas_lib}
+- pango
+${pcre_libs}
+- tcl
+- tk
+- unzip
+- which
+- xz-devel
+- zip
+- zlib-devel
+contents:
+- src: ${R_INSTALL_PATH}
+  dst: ${R_INSTALL_PATH}
+${scripts}
+EOF
+
+nfpm package \
+  -f /tmp/nfpm.yml \
+  -p rpm \
+  -t "/tmp/output/${OS_IDENTIFIER}"
+
+export PKG_FILE=$(ls /tmp/output/${OS_IDENTIFIER}/R-${R_VERSION}*.rpm | head -1)

serverless-resources.yml

@@ -257,6 +257,34 @@ rBuildsBatchJobDefinitionOpensuse154:
       Image: "#{AWS::AccountId}.dkr.ecr.#{AWS::Region}.amazonaws.com/r-builds:opensuse-154"
     Timeout:
       AttemptDurationSeconds: 7200
+rBuildsBatchJobDefinitionFedora37:
+  Type: AWS::Batch::JobDefinition
+  Properties:
+    Type: container
+    ContainerProperties:
+      Command:
+        - ./build.sh
+      Vcpus: 4
+      Memory: 4096
+      JobRoleArn:
+        "Fn::GetAtt": [ rBuildsEcsTaskIamRole, Arn ]
+      Image: "#{AWS::AccountId}.dkr.ecr.#{AWS::Region}.amazonaws.com/r-builds:fedora-37"
+    Timeout:
+      AttemptDurationSeconds: 7200
+rBuildsBatchJobDefinitionFedora38:
+  Type: AWS::Batch::JobDefinition
+  Properties:
+    Type: container
+    ContainerProperties:
+      Command:
+        - ./build.sh
+      Vcpus: 4
+      Memory: 4096
+      JobRoleArn:
+        "Fn::GetAtt": [ rBuildsEcsTaskIamRole, Arn ]
+      Image: "#{AWS::AccountId}.dkr.ecr.#{AWS::Region}.amazonaws.com/r-builds:fedora-38"
+    Timeout:
+      AttemptDurationSeconds: 7200
 
 # step function cloudwatch event trigger resources
 rBuildsEventRuleIamRole:

serverless.yml

@@ -63,7 +63,11 @@ provider:
       Ref: rBuildsBatchJobDefinitionRhel9
     JOB_DEFINITION_ARN_opensuse_154:
       Ref: rBuildsBatchJobDefinitionOpensuse154
-    SUPPORTED_PLATFORMS: ubuntu-2004,ubuntu-2204,debian-10,debian-11,debian-12,centos-7,centos-8,rhel-9,opensuse-154
+    JOB_DEFINITION_ARN_fedora_37:
+      Ref: rBuildsBatchJobDefinitionFedora37
+    JOB_DEFINITION_ARN_fedora_38:
+      Ref: rBuildsBatchJobDefinitionFedora38
+    SUPPORTED_PLATFORMS: ubuntu-2004,ubuntu-2204,debian-10,debian-11,debian-12,centos-7,centos-8,rhel-9,opensuse-154,fedora-37,fedora-38
 
 functions:
   queueBuilds:

test/docker-compose.yml

@@ -71,3 +71,19 @@ services:
       - R_VERSION=${R_VERSION}
     volumes:
       - ../:/r-builds
+  fedora-37:
+    image: fedora:37
+    command: /r-builds/test/test-yum.sh
+    environment:
+      - OS_IDENTIFIER=fedora-37
+      - R_VERSION=${R_VERSION}
+    volumes:
+      - ../:/r-builds
+  fedora-38:
+    image: fedora:38
+    command: /r-builds/test/test-yum.sh
+    environment:
+      - OS_IDENTIFIER=fedora-38
+      - R_VERSION=${R_VERSION}
+    volumes:
+      - ../:/r-builds