build-cran-binaries/.woodpecker/process-updates-redhat-9-arm64.yaml

when:
  - event: [cron]
    cron: process-cran-updates
  - event: manual
    evaluate: 'process_cran_updates == "all"'
  - event: manual
    evaluate: 'process_cran_updates == "redhat-9-arm64"'

skip_clone: true

steps:
  - name: 'Warming up'
    image: busybox:latest
    failure: ignore
    environment:
      PLATFORM: ubuntu-2204
      BLOCK: 21389:length(pkgs)
      NCPUS: 2
      STRATEGY: sequential
    commands:
      - sleep 1
      - echo "Warmed Up"
    backend_options:
      kubernetes:
        resources:
          requests:
            memory: 14Gi
            cpu: 4000m
          limits:
            memory: 14Gi
            cpu: 4000m
        nodeSelector:
          kubernetes.io/arch: arm64
          node.kubernetes.io/instance-type: cax31
        tolerations:
          - key: 'CI'
            operator: 'Equal'
            value: 'true'
            effect: 'NoSchedule'

  - name: 'Processing Updates'
    secrets: [red_hat_dev_pw, aws_access_key_id, aws_secret_access_key, pgpass, git_ro_token, GITHUB_PAT]
    image: docker.io/devxygmbh/arm64-binaries-r-${PLATFORM}
    pull: true
    environment:
      GIT_USER: pat-s
      # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
      R_PKG_CACHE_DIR: /mnt/cache/pkgcache
      R_LIBS_USER: /mnt/cache/R-pkgs
      CCACHE_DIR: /mnt/cache/ccache
      PLATFORM: redhat-9
      ARCH: arm64
      NCPUS: 2
      MEMORY: 14Gi
      STRATEGY: sequential
      INSTANCE_TYPE: cax31
      INTERVAL: lubridate::interval(lubridate::today() - 3, lubridate::today() - 31)
    volumes:
      - arm64-binaries-r-dep-cache-${PLATFORM}:/mnt/cache
    commands:
      # download latest package version (avoid having to rebuild image every time)
      - git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git .
      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /mnt/cache/R-pkgs/00LOCK-RPostgres
      # for some reason paks pkgcache is often corrupt
      - rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/
      - R -q -e 'pak::meta_update()'
      - R CMD INSTALL .
      - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      # set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point
      # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
      - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); pkgs = tools::CRAN_package_db()[[1]][$BLOCK]; pkgs = setdiff(pkgs, c('biplotbootGUI', 'Rsymphony', 'PortfolioAnalytics', 'ROI.plugin.symphony', 'adea', 'RInno', 'skedastic', 'RPushbullet', 'SimNPH', 'SimDesign','simCAT', 'SIAmodules', 'shinytest2', 'shinyIRT', 'ShinyItemAnalysis', 'shiny.benchmark', 'scDIFtest', 'RSP', 'ROracle', 'ROI.plugin.qpoases', 'ROI.plugin.cplex', 'RmecabKo', 'rmarchingcubes', 'RcppMeCab', 'Rcplex', 'ravetools', 'Rbeast', 'Rblpapi', 'RcppEnsmallen', 'qtkit', 'priorCON', 'prior3D', 'PerFit', 'outlierensembles', 'nomnoml', 'mxfda', 'MultBiplotR', 'mstDIF', 'mdsr', 'makepipe', 'lordif', 'KSgeneral', 'kequate', 'jstager', 'jrt', 'irtreliability', 'irtQ', 'irtpwr', 'irtawsi', 'GRShiny', 'gpuR', 'googletraffic', 'giacR', 'gamstransfer', 'aflps', 'flow', 'filters', 'faoutlier', 'equateIRT', 'EnrichIntersect', 'EFA.dimensions', 'DFIT', 'D3mirt', 'ctgdist', 'CoTiMA', 'ConvertPar', 'clrng', 'bscui', 'BifactorIndicesCalculator', 'autoFC', 'airt')); library(bincraftR); future::plan('sequential'); options(progressr.enable = TRUE); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); process_cran_updates(interval = $INTERVAL, platform = 'redhat-9', process_updated = TRUE, process_new = TRUE)"
    backend_options:
      kubernetes:
        ### PROD
        resources:
          requests:
            memory: 14Gi
            cpu: 4000m
          limits:
            memory: 14Gi
            cpu: 4000m
        # DEBUG
        # resources:
        #   requests:
        #     memory: 4Gi
        #     cpu: 2000m
        #   limits:
        #     memory: 4Gi
        #     cpu: 2000m
        nodeSelector:
          kubernetes.io/arch: arm64
          node.kubernetes.io/instance-type: cax31
        tolerations:
          - key: 'CI'
            operator: 'Equal'
            value: 'true'
            effect: 'NoSchedule'

  - name: 'ntfy'
    image: codeberg.org/l-x/woodpecker-ntfy:1.3.1
    when:
      - status: [failure]
    settings:
      url: https://ntfy.devxy.io/ci-builds
      token:
        from_secret: ntfy_token
      title: "CI '${CI_REPO}' failed"
      actions: view, Open build, ${CI_PIPELINE_URL}, clear=false;
      click: ${CI_BUILD_LINK}
      message: |
        Workflow: ${CI_WORKFLOW_NAME/\n//}
        Commit message: ${CI_COMMIT_MESSAGE/\n//}
        Commit Author: ${CI_COMMIT_AUTHOR/\n//}
    backend_options:
      kubernetes:
        resources:
          requests:
            memory: 100Mi
            cpu: 0m
          limits:
            memory: 300Mi
            cpu: 200m