pat-s
f3c18b6805bincraft dropped pak in favour of uvr, so the pipelines, helper scripts and images in this repo move with it. - add local/uvr-install.sh as the single replacement for pak::pak(); it bootstraps a pinned uvr, mints a throwaway project under TMPDIR and runs `uvr add --no-install` + `uvr sync --library`, because `uvr add` refuses to run outside a project and only `sync` honours --library - install bincraft via its Forgejo spec (forgejo::codefloe.com/rpkgs/ bincraft@<tag>) instead of a git:: URL, keeping the git ls-remote tag resolution - pass UVR_R_BIN/UVR_TARGET_LIB from install-bincraft.R so the per-R-minor passes target their own R and library - replace R_PKG_CACHE_DIR with UVR_CACHE_DIR/UVR_PACKAGES_DIR on the persistent volume, preserving the amd64-off/arm64-on split - drop trim_pkgcache_metadata() and its test; uvr's cache does not grow the way pkgcache's _metadata dir did - let uvr install system requirements from its vendored r-system-requirements rules, replacing pak::sysreqs_db_update() - migrate the shiny app image, the alpine reprex and the CRAN loading test; ship uvr-install.sh in the build-one image - track the uvr pin with renovate
76 lines
3.6 KiB
Docker
76 lines
3.6 KiB
Docker
# syntax=docker/dockerfile:1
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# Targeted (re)build of specific package versions, executed on a remote buildx
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# builder. The build's effect is the S3 upload performed by build-one.R; no
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# image is kept (the justfile uses --output type=cacheonly). CACHEBUST forces
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# the RUN to re-execute on every invocation.
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#
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# Build context is `local/` (see the `rebuild` recipe in the justfile).
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ARG OS
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ARG OS_VERSION
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FROM reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}
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ARG R_VERSION=4.5.3
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ARG PACKAGE
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ARG VERSIONS
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ARG CACHEBUST
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WORKDIR /work
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COPY build-one.R /work/build-one.R
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# Resolve and install the latest bincraft release dynamically (no hardcoded pin).
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# uvr-install.sh lands under /work/local/ because install-bincraft.R looks for it
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# there when the working directory is not a repo checkout.
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COPY install-bincraft.R /work/install-bincraft.R
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COPY uvr-install.sh /work/local/uvr-install.sh
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# Ship the patch registry so build-one.R's `patches = "local/patches"` resolves
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# (build context is `local/`, CWD is /work).
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COPY patches /work/local/patches
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RUN --mount=type=secret,id=b2_access,required=true \
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--mount=type=secret,id=b2_secret,required=true \
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--mount=type=secret,id=pgpass,required=true \
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--mount=type=secret,id=github_pat,required=false \
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export B2_S3_ACCESS_KEY="$(cat /run/secrets/b2_access)" && \
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export B2_S3_SECRET_KEY="$(cat /run/secrets/b2_secret)" && \
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export PGPASS="$(cat /run/secrets/pgpass)" && \
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export GITHUB_PAT="$(cat /run/secrets/github_pat 2>/dev/null || true)" && \
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export GIT_TERMINAL_PROMPT=0 && \
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export OTEL_SDK_DISABLED=true && \
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export OTEL_R_TRACES_EXPORTER=none && \
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export OTEL_R_LOGS_EXPORTER=none && \
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export OTEL_R_METRICS_EXPORTER=none && \
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XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run || true); \
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XVFB_ARGS=""; \
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if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi; \
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USE_XVFB=0; \
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if [ -n "$XVFB" ] && $XVFB -a $XVFB_ARGS -- true >/dev/null 2>&1; then \
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USE_XVFB=1; echo "Using virtual display via $XVFB"; \
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else \
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echo "No working virtual display; building without xvfb" >&2; \
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fi; \
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run_build() { if [ "$USE_XVFB" = 1 ]; then $XVFB -a $XVFB_ARGS -- "$@"; else "$@"; fi; }; \
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ensure_bincraft() { "$1" -q -e 'source("/work/install-bincraft.R")'; }; \
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PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2); \
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seen=" $PRIMARY_MINOR "; \
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prc=0; failed=""; \
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rm -f .r_minor_sensitive; \
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echo "=== primary pass under R $R_VERSION ==="; \
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ensure_bincraft /opt/R/${R_VERSION}/bin/R; \
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run_build /opt/R/${R_VERSION}/bin/Rscript /work/build-one.R "${PACKAGE}" ${VERSIONS} || prc=$?; \
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if [ -f .r_minor_sensitive ]; then \
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for RBIN in /opt/R/*/bin/Rscript; do \
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[ -x "$RBIN" ] || continue; \
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RV=$(basename "$(dirname "$(dirname "$RBIN")")"); \
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case "$RV" in [0-9]*) ;; *) continue ;; esac; \
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RMINOR=$(echo "$RV" | cut -d. -f1-2); \
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case "$seen" in *" $RMINOR "*) continue ;; esac; \
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seen="$seen$RMINOR "; \
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echo "=== sensitive-only pass under R $RV ==="; \
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ensure_bincraft "$(dirname "$RBIN")/R"; \
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run_build "$RBIN" /work/build-one.R --sensitive-only "${PACKAGE}" ${VERSIONS} || failed="$failed $RV"; \
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done; \
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else \
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echo "Package not r-minor-sensitive; skipping per-minor passes."; \
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fi; \
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if [ -n "$failed" ]; then echo "WARNING: extra-minor build(s) failed (non-fatal; e.g. a version too old to compile on a newer R):$failed" >&2; fi; \
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if [ "$prc" != 0 ]; then echo "primary pass under R $R_VERSION failed (exit $prc)" >&2; fi; \
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exit "$prc"
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