pat-s
ea4e1786f5bincraft#33 replaces the cranlike fork: upload_package_index() no longer keeps a PACKAGES.db and reuses the records of the published PACKAGES.rds instead, so patching the database stops having any effect. - patch Built in each slot's PACKAGES.rds, limited to the slot's own rows, when the installed bincraft no longer loads cranlike - keep patching PACKAGES.db for releases that still do - call the internal built_stamp() with `:::`, it was never exported
109 lines
3.4 KiB
YAML
109 lines
3.4 KiB
YAML
### Manual repair of a slot whose PACKAGES index advertises a broken `Built`
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### stamp (e.g. `Built: R 4.5.0; NA; ...`).
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#
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# uvr matches the stamp's platform triple plus R minor to decide binary vs
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# source, so an unusable triple turns a whole slot source-only. See
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# local/repair-built-stamp.R for why this patches the published PACKAGES.rds in
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# place instead of forcing a full reparse.
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#
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# Run with `dry_run: true` first: it reports how many entries are broken per
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# slot and changes nothing. Pick the R version the slot should advertise, which
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# is the R_VERSION its entry in .crow/process-updates.yaml uses.
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#
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# The gate variable is `repair_built_stamp`, not `target_arch`: `target_arch` is
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# what build-all-versions and build-all-versions-install-deps gate on, so a
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# manual run passing it would start a full rebuild alongside this repair. Every
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# pipeline here gates on a variable named after itself for exactly that reason.
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#
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# crow pipeline create --branch main \
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# --var repair_built_stamp=arm64 --var OS=alpine --var OS_VERSION=3.23 \
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# --var R_VERSION=4.5.3 --var dry_run=true devxy/build-cran-binaries
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variables:
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# Gates this pipeline. A manual pipeline creation instantiates every file in
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# .crow/, and a declared default is applied even when the run never passed
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# this variable, so the default must be a value that matches no matrix row.
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repair_built_stamp:
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description: 'Architecture of the slot to repair, or "none" to run nothing.'
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options:
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- none
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- amd64
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- arm64
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default: none
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OS:
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description: 'Base OS image name.'
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options:
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- alpine
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- redhat
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- ubuntu
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default: alpine
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OS_VERSION:
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description: 'OS image tag. Must match OS (alpine: 3.23/3.24; redhat: 8/9/10; ubuntu: jammy/noble/resolute).'
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options:
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- '3.23'
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- '3.24'
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- '8'
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- '9'
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- '10'
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- 'jammy'
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- 'noble'
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- 'resolute'
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default: '3.23'
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R_VERSION:
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description: 'R version whose stamp the slot should advertise.'
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options:
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- 4.5.3
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- 4.4.3
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default: 4.5.3
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dry_run:
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description: 'Report what would change without writing anything.'
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options:
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- 'true'
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- 'false'
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default: 'true'
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when:
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- event: manual
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evaluate: 'repair_built_stamp == "${ARCH}"'
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skip_clone: true
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labels:
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platform: linux/${ARCH}
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group: rpkgs-${ARCH}
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matrix:
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include:
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- ARCH: amd64
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- ARCH: arm64
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steps:
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- name: 'Repair Built stamp'
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image: 'reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}'
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pull: true
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environment:
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B2_S3_ACCESS_KEY:
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from_secret: B2_S3_ACCESS_KEY
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B2_S3_SECRET_KEY:
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from_secret: B2_S3_SECRET_KEY
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REPO_RO_TOKEN:
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from_secret: REPO_RO_TOKEN
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GIT_USER: pat-s
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commands:
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- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
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- /opt/R/$R_VERSION/bin/Rscript local/install-bincraft.R
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- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
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- |
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if [ "$dry_run" = "false" ]; then
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/opt/R/$R_VERSION/bin/Rscript local/repair-built-stamp.R "$ARCH" --apply
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else
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/opt/R/$R_VERSION/bin/Rscript local/repair-built-stamp.R "$ARCH"
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fi
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backend_options:
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docker:
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resources:
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requests:
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memory: 2Gi
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cpu: 1000m
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limits:
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memory: 8Gi
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cpu: 2000m
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