build-cran-binaries/.crow/process-updates.yaml

# Consolidated process-updates pipeline (all platforms, both arches).
# One matrix row per OS/arch replaces the former per-platform files.
# Routing is preserved 1:1:
#   - cron:   each existing `process-cran-updates-<os>-<arch>` cron fires only
#             its matching matrix row (via the per-row `cron:` name filter).
#   - manual: pick a target from the `process_cran_updates` dropdown;
#             "all" fans out every os/arch as parallel matrix workflows.
# Arch placement is handled by the group label (rpkgs-amd64, rpkgs-arm64).
variables:
  # Gates this pipeline. A manual pipeline creation instantiates every file in
  # .crow/, and a declared default is applied even when the run never passed
  # this variable, so the default must be a value that matches no matrix row.
  process_cran_updates:
    description: "Manual run target: a specific <os>-<arch>, 'all' to run every os/arch in parallel, or 'none' to run nothing."
    options:
      - none
      - all
      - alpine-323-amd64
      - alpine-323-arm64
      - alpine-324-amd64
      - alpine-324-arm64
      - redhat-8-amd64
      - redhat-8-arm64
      - redhat-9-amd64
      - redhat-9-arm64
      - redhat-10-amd64
      - redhat-10-arm64
      - ubuntu-2204-amd64
      - ubuntu-2204-arm64
      - ubuntu-2404-amd64
      - ubuntu-2404-arm64
      - ubuntu-2604-amd64
      - ubuntu-2604-arm64
    default: none

when:
  - event: cron
    cron: process-cran-updates-${OS}-${ARCH}
  - event: manual
    evaluate: 'process_cran_updates == "all" || process_cran_updates == "${OS}-${ARCH}"'

skip_clone: true

labels:
  group: rpkgs-${ARCH}

matrix:
  include:
    - OS: alpine-323
      ARCH: amd64
      R_VERSION: 4.5.3
      IMG: alpine:3.23
      OS_ID: alpine323
      PROCESS_NEW: 'FALSE'
    - OS: alpine-323
      ARCH: arm64
      R_VERSION: 4.5.3
      IMG: alpine:3.23
      OS_ID: alpine323
      PROCESS_NEW: 'FALSE'
    - OS: alpine-324
      ARCH: amd64
      R_VERSION: 4.5.3
      IMG: alpine:3.24
      OS_ID: alpine324
      PROCESS_NEW: 'FALSE'
    - OS: alpine-324
      ARCH: arm64
      R_VERSION: 4.5.3
      IMG: alpine:3.24
      OS_ID: alpine324
      PROCESS_NEW: 'FALSE'
    - OS: redhat-8
      ARCH: amd64
      R_VERSION: 4.4.3
      IMG: redhat:8
      OS_ID: rhel8
      PROCESS_NEW: 'TRUE'
    - OS: redhat-8
      ARCH: arm64
      R_VERSION: 4.4.3
      IMG: redhat:8
      OS_ID: rhel8
      PROCESS_NEW: 'TRUE'
    - OS: redhat-9
      ARCH: amd64
      R_VERSION: 4.4.3
      IMG: redhat:9
      OS_ID: rhel9
      PROCESS_NEW: 'TRUE'
    - OS: redhat-9
      ARCH: arm64
      R_VERSION: 4.4.3
      IMG: redhat:9
      OS_ID: rhel9
      PROCESS_NEW: 'TRUE'
    - OS: redhat-10
      ARCH: amd64
      R_VERSION: 4.5.3
      IMG: redhat:10
      OS_ID: rhel10
      PROCESS_NEW: 'TRUE'
    - OS: redhat-10
      ARCH: arm64
      R_VERSION: 4.5.3
      IMG: redhat:10
      OS_ID: rhel10
      PROCESS_NEW: 'TRUE'
    - OS: ubuntu-2204
      ARCH: amd64
      R_VERSION: 4.4.3
      IMG: ubuntu:jammy
      OS_ID: jammy
      PROCESS_NEW: 'TRUE'
    - OS: ubuntu-2204
      ARCH: arm64
      R_VERSION: 4.4.3
      IMG: ubuntu:jammy
      OS_ID: jammy
      PROCESS_NEW: 'TRUE'
    - OS: ubuntu-2404
      ARCH: amd64
      R_VERSION: 4.4.3
      IMG: ubuntu:noble
      OS_ID: noble
      PROCESS_NEW: 'TRUE'
    - OS: ubuntu-2404
      ARCH: arm64
      R_VERSION: 4.4.3
      IMG: ubuntu:noble
      OS_ID: noble
      PROCESS_NEW: 'TRUE'
    - OS: ubuntu-2604
      ARCH: amd64
      R_VERSION: 4.5.3
      IMG: ubuntu:resolute
      OS_ID: resolute
      PROCESS_NEW: 'TRUE'
    - OS: ubuntu-2604
      ARCH: arm64
      R_VERSION: 4.5.3
      IMG: ubuntu:resolute
      OS_ID: resolute
      PROCESS_NEW: 'TRUE'

steps:
  - name: 'Processing Updates'
    image: reg.devxy.io/rpkgs/build-env-${IMG}
    pull: true
    environment:
      OTEL_R_TRACES_EXPORTER: none
      OTEL_R_LOGS_EXPORTER: none
      OTEL_R_METRICS_EXPORTER: none
      RED_HAT_DEV_PW:
        from_secret: RED_HAT_DEV_PW
      B2_S3_ACCESS_KEY:
        from_secret: B2_S3_ACCESS_KEY
      B2_S3_SECRET_KEY:
        from_secret: B2_S3_SECRET_KEY
      PGPASS:
        from_secret: PGPASS
      REPO_RO_TOKEN:
        from_secret: REPO_RO_TOKEN
      GITHUB_PAT:
        from_secret: GITHUB_PAT
      # normal env vars
      GIT_USER: pat-s
      NTFY_SERVER:
        from_secret: NTFY_SERVER
      NTFY_TOPIC:
        from_secret: NTFY_TOPIC
      NTFY_AUTH: TRUE
      NTFY_PASSWORD:
        from_secret: ntfy_token
      # set the location of uvr's caches, which persist the R package
      # dependencies needed to install the packages themselves
      UVR_CACHE_DIR: /mnt/cache/uvr/cache
      UVR_PACKAGES_DIR: /mnt/cache/uvr/packages
      R_LIBS_USER: /mnt/cache/R-pkgs
      R_VERSION: ${R_VERSION}
      CCACHE_DIR: /mnt/cache/ccache
      PLATFORM: ${OS}
      OS_ID: ${OS_ID}
      ARCH: ${ARCH}
      NCPUS: 2
      INTERVAL: lubridate::interval(lubridate::today() - 6, lubridate::today() - 3)
    commands:
      - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
      - rm -rf /mnt/cache/R-pkgs/00LOCK-* /mnt/cache/R-pkgs/bincraft
      - mkdir -p /mnt/cache/uvr/cache /mnt/cache/uvr/packages /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      - /opt/R/$R_VERSION/bin/Rscript local/install-bincraft.R
      - UVR_R_BIN=/opt/R/$R_VERSION/bin/R local/uvr-install.sh RPostgres
      - /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
      # rhel-10 ships xwfb-run (Xwayland) instead of xvfb-run; prefer it and start weston, else fall back to xvfb-run
      - XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi
      # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
      - $XVFB $XVFB_ARGS -- /opt/R/$R_VERSION/bin/R -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = 'error', repos = structure(c(getOption('repos'),INLA='https://inla.r-inla-download.org/R/stable'))); progressr::handlers('cli'); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = '${OS}', process_updated = TRUE, process_new = ${PROCESS_NEW}, process_removed = TRUE, patches = 'local/patches', r_minor_detection = 'classifier',s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)"
      - |
        PRIMARY_MINOR=$(echo "$R_VERSION" | cut -d. -f1-2)
        for RBIN in /opt/R/[0-9]*/bin/R; do
          RV=$(basename "$(dirname "$(dirname "$RBIN")")")
          RMINOR=$(echo "$RV" | cut -d. -f1-2)
          [ "$RMINOR" = "$PRIMARY_MINOR" ] && continue
          echo "=== R-minor-sensitive update pass under R $RV ==="
          LIB="/mnt/cache/R-pkgs-$RMINOR"
          mkdir -p "$LIB"
          R_LIBS_USER="$LIB" "$(dirname "$RBIN")/Rscript" local/install-bincraft.R || true
          R_LIBS_USER="$LIB" UVR_R_BIN="$RBIN" local/uvr-install.sh RPostgres || true
          R_LIBS_USER="$LIB" $XVFB $XVFB_ARGS -- "$(dirname "$RBIN")/R" -q -e "options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = NULL); bincraft::process_cran_updates(interval = $INTERVAL, platform = '${OS}', process_updated = TRUE, process_new = FALSE, process_removed = FALSE, patches = 'local/patches', r_minor_detection = 'classifier',r_minor_sensitive_only = TRUE, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE)" || true
        done
      - /opt/R/$R_VERSION/bin/R -q -e 'library(bincraft); upload_package_index(codename = "${OS_ID}", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
      - |
        for RBIN in /opt/R/[0-9]*/bin/R; do
          RMINOR=$(basename "$(dirname "$(dirname "$RBIN")")" | cut -d. -f1-2)
          /opt/R/$R_VERSION/bin/R -q -e "library(bincraft); upload_package_index(codename = '${OS_ID}', r_minor = '$RMINOR', s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'))" || true
        done
    backend_options:
      docker:
        resources:
          requests:
            memory: 5Gi
            cpu: 3000m
          limits:
            memory: 18Gi
            cpu: 3000m

  - name: Purge CDN cache
    image: reg.devxy.io/docker.io/library/alpine:3.24
    environment:
      OTEL_R_TRACES_EXPORTER: none
      OTEL_R_LOGS_EXPORTER: none
      OTEL_R_METRICS_EXPORTER: none
      BUNNYNET_API_KEY:
        from_secret: BUNNYNET_API_KEY
      SUBDOMAIN1: 'cran.devxy.io'
      SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
      SUBDOMAIN3: 'cran.rpkgs.com'
      OS_ID: ${OS_ID}
      ARCH: ${ARCH}
    commands:
      - apk add --no-cache -q bash curl
      - bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"