pat-s
ce8d74d0eb
Uses install-deps step, precomputed package list, weston compositor, stderr redirect, sequential plan with progress output, and unique X server numbers.
112 lines
6.5 KiB
YAML
112 lines
6.5 KiB
YAML
### Required extra vars
|
|
# ARCH (amd64)
|
|
# OS (alpine)
|
|
# OS_VERSION (3.22)
|
|
# R_VERSION (4.5)
|
|
# echo "c('RInno','KeyboardSimulator','R2PPT','RWinEdt','blatr','excel.link','spectrino','taskscheduleR','MDSGUI','BiplotGUI','R2wd','rFUSION','MediaNews','doBy','IDPmisc','frailtypack','afex','FrF2','DoE.base','agricolae','doFuture','fscaret','PHYLOGR','seewave','pls','relaimpo','geepack','gggenes','NPCirc','repmis','PNDSIBGE','lidR','poismf','neonstore','MachineShop','mvst','MacBehaviour','mcmcderive','RGIFT','KnowBR','netmeta','spdep','sf','Rfast','compareGroups','ff','GsymPoint','RcppDynProg','comtradr','RcppDynProg','FD','PearsonDS','DCluster','gRc','mixlm','geospt','fdth','ffmanova','fiery','ffscrapr','cold','fiery','RcmdrPlugin.DoE','RcmdrPlugin.NMBU')" | base64
|
|
# crow pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.22 --var R_VERSION=4.5 --var task=build-all-arm64 --var K8S_INSTANCE_TYPE=cax41 --branch=main --var SKIP_PKGS=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 --log-level=info 7
|
|
# crow pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.23 --var R_VERSION=4.5 --var task=build-all-arm64 --var K8S_INSTANCE_TYPE=cax41 --branch=main --log-level=info 5
|
|
# crow pipeline create --var ARCH=arm64 --var OS=redhat --var OS_VERSION=10 --var R_VERSION=4.5.3 --var task=build-all-arm64 --branch=main --log-level=info 5
|
|
when:
|
|
- event: manual
|
|
evaluate: 'task == "build-all-arm64"'
|
|
|
|
skip_clone: true
|
|
|
|
labels:
|
|
agent: gaia
|
|
|
|
matrix:
|
|
include:
|
|
# - SPLIT_INTO: 5
|
|
# SPLIT_INDEX: 1
|
|
# BACKEND: kubernetes
|
|
# - SPLIT_INTO: 5
|
|
# SPLIT_INDEX: 2
|
|
# BACKEND: kubernetes
|
|
# - SPLIT_INTO: 5
|
|
# SPLIT_INDEX: 3
|
|
# BACKEND: kubernetes
|
|
# - SPLIT_INTO: 5
|
|
# SPLIT_INDEX: 4
|
|
# BACKEND: kubernetes
|
|
# - SPLIT_INTO: 5
|
|
# SPLIT_INDEX: 5
|
|
# BACKEND: kubernetes
|
|
- SPLIT_INTO: 4
|
|
SPLIT_INDEX: 1
|
|
BACKEND: docker
|
|
- SPLIT_INTO: 4
|
|
SPLIT_INDEX: 2
|
|
BACKEND: docker
|
|
- SPLIT_INTO: 4
|
|
SPLIT_INDEX: 3
|
|
BACKEND: docker
|
|
- SPLIT_INTO: 4
|
|
SPLIT_INDEX: 4
|
|
BACKEND: docker
|
|
# - SPLIT_INTO: 5
|
|
# SPLIT_INDEX: 5
|
|
# BACKEND: docker
|
|
|
|
depends_on:
|
|
- build-all-versions-install-deps
|
|
|
|
steps:
|
|
- name: 'Build binaries'
|
|
image: reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}-${R_VERSION}
|
|
pull: true
|
|
environment:
|
|
RED_HAT_DEV_PW:
|
|
from_secret: RED_HAT_DEV_PW
|
|
B2_S3_ACCESS_KEY:
|
|
from_secret: B2_S3_ACCESS_KEY
|
|
B2_S3_SECRET_KEY:
|
|
from_secret: B2_S3_SECRET_KEY
|
|
PGPASS:
|
|
from_secret: PGPASS
|
|
REPO_RO_TOKEN:
|
|
from_secret: REPO_RO_TOKEN
|
|
GITHUB_PAT:
|
|
from_secret: GITHUB_PAT
|
|
# normal env vars
|
|
GIT_USER: pat-s
|
|
# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
|
|
R_PKG_CACHE_DIR: /mnt/cache/pkgcache
|
|
R_LIBS_USER: /mnt/cache/R-pkgs
|
|
CCACHE_DIR: /mnt/cache/ccache
|
|
NCPUS: 2
|
|
volumes:
|
|
- ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
|
|
commands:
|
|
- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
|
|
- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
|
|
- XVFB=$(command -v xwfb-run 2>/dev/null || command -v xvfb-run); XVFB_ARGS=""; if command -v xwfb-run >/dev/null 2>&1; then dnf install -y -q weston 2>/dev/null; XVFB_ARGS="-c weston"; fi
|
|
- $XVFB $XVFB_ARGS -n $SPLIT_INDEX -- R -q -e "sink(stdout(), type = 'message'); options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pkgs = readRDS('/mnt/cache/packages/pkgs_to_build.rds'); sprintf('Total# of remaining packages:%s', length(pkgs)); pkgs <- split(pkgs, cut(seq_along(pkgs), $SPLIT_INTO, labels = F))[[$SPLIT_INDEX]]; sprintf('# of packages for this job:%s', length(pkgs)); pkgs = setdiff(pkgs, c('RInno', 'RcmdrPlugin.DoE', 'RcmdrPlugin.NMBU', 'RcmdrPlugin.ROC', 'RcmdrPlugin.RiskDemo', 'RcmdrPlugin.TeachStat', 'RcmdrPlugin.TeachingDemos', 'RcmdrPlugin.UCA', 'RcmdrPlugin.WorldFlora', 'RcmdrPlugin.aRnova', 'RcmdrPlugin.depthTools', 'RcmdrPlugin.orloca', 'RcmdrPlugin.sos', 'RcmdrPlugin.survival', 'RcmdrPlugin.temis')); library(future); plan('sequential'); n = length(pkgs); foo = lapply(seq_along(pkgs), function(i) { x = pkgs[i]; cat(sprintf('[%d/%d] %s\n', i, n, x)); bincraft::build_binary_package(x, s3_endpoint = 'https://s3.eu-central-003.backblazeb2.com', tag_limit = 5L, s3_region = 'eu-central-003', s3_bucket = 'devxy-rpkgs-binaries', s3_access_key_id = Sys.getenv('B2_S3_ACCESS_KEY'), s3_secret_access_key = Sys.getenv('B2_S3_SECRET_KEY'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE) })" 2>&1
|
|
# archive missed packages
|
|
- R -q -e "bincraft::process_unarchived_pkgs(paste(Sys.getenv('OS'), Sys.getenv('OS_VERSION')), Sys.getenv('ARCH'), workers = $NCPUS)"
|
|
backend_options:
|
|
docker:
|
|
resources:
|
|
requests:
|
|
memory: 5Gi
|
|
cpu: 1000m
|
|
limits:
|
|
memory: 20Gi
|
|
cpu: 2000m
|
|
kubernetes:
|
|
resources:
|
|
requests:
|
|
memory: 5Gi
|
|
cpu: 1000m
|
|
limits:
|
|
memory: 20Gi
|
|
cpu: 2000m
|
|
nodeSelector:
|
|
kubernetes.io/arch: ${ARCH}
|
|
node.kubernetes.io/instance-type: ${K8S_INSTANCE_TYPE}
|
|
tolerations:
|
|
- key: 'CI'
|
|
operator: 'Equal'
|
|
value: 'true'
|
|
effect: 'NoSchedule'
|