pat-s
cdd823da82
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88 lines
4.3 KiB
YAML
88 lines
4.3 KiB
YAML
### Required extra vars
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# ARCH (amd64)
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# OS (alpine)
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# OS_VERSION (3.22)
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# R_VERSION (4.5)
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# woodpecker-cli pipeline create --var ARCH=amd64 --var OS=alpine --var OS_VERSION=3.22 --var R_VERSION=4.5 --var task=build-all --branch=main --log-level=info 7
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# woodpecker-cli pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.22 --var R_VERSION=4.5 --var task=build-all --branch=main --log-level=info 7
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when:
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- event: manual
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evaluate: 'task == "build-all"'
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skip_clone: true
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matrix:
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include:
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- SPLIT_INTO: 10
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SPLIT_INDEX: 1
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- SPLIT_INTO: 10
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SPLIT_INDEX: 2
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- SPLIT_INTO: 10
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SPLIT_INDEX: 3
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- SPLIT_INTO: 10
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SPLIT_INDEX: 4
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- SPLIT_INTO: 10
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SPLIT_INDEX: 5
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- SPLIT_INTO: 10
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SPLIT_INDEX: 6
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- SPLIT_INTO: 10
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SPLIT_INDEX: 7
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- SPLIT_INTO: 10
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SPLIT_INDEX: 8
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- SPLIT_INTO: 10
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SPLIT_INDEX: 9
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- SPLIT_INTO: 10
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SPLIT_INDEX: 10
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depends_on:
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- build-all-versions-install-deps
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steps:
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- name: 'Build binaries'
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image: docker.io/devxygmbh/rpkgs-build-env-${OS}:${OS_VERSION}-${R_VERSION}
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pull: true
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environment:
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RED_HAT_DEV_PW:
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from_secret: RED_HAT_DEV_PW
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HETZNER_S3_ACCESS_KEY_K3S:
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from_secret: HETZNER_S3_ACCESS_KEY_K3S
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HETZNER_S3_SECRET_KEY_K3S:
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from_secret: HETZNER_S3_SECRET_KEY_K3S
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PGPASS:
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from_secret: PGPASS
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GIT_RO_TOKEN:
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from_secret: GIT_RO_TOKEN
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GITHUB_PAT:
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from_secret: GITHUB_PAT
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# normal env vars
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GIT_USER: pat-s
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# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
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R_PKG_CACHE_DIR: /mnt/cache/pkgcache
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R_LIBS_USER: /mnt/cache/R-pkgs
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CCACHE_DIR: /mnt/cache/ccache
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NCPUS: 2
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volumes:
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- ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
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commands:
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- git clone -q https://pat-s:$$GIT_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
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- R -q -e 'packageVersion("bincraft")'
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- mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
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# Windows-only: 'RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd', 'rFUSION', 'MediaNews', 'rFUSION', 'MediaNews'
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- xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); source('local/packages-to-build.R'); sprintf('Total# of remaining packages:%s', length(pkgs)); pkgs <- split(pkgs, cut(seq_along(pkgs), Sys.getenv('SPLIT_INTO'), labels = F))[[Sys.getenv('SPLIT_INDEX')]]; sprintf('# of packages for this job:%s', length(pkgs)); pkgs = setdiff(pkgs, c('RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd', 'rFUSION', 'MediaNews', 'doBy', 'IDPmisc', 'frailtypack', 'afex', 'FrF2', 'DoE.base', 'agricolae', 'doFuture', 'fscaret', 'PHYLOGR', 'seewave', 'pls', 'relaimpo', 'geepack', 'gggenes', 'NPCirc', 'repmis', 'PNDSIBGE', 'lidR', 'poismf', 'neonstore', 'MachineShop', 'mvst', 'MacBehaviour', 'mcmcderive', 'RGIFT', 'KnowBR', 'netmeta', 'spdep', 'sf', 'Rfast', 'compareGroups')); library(future); plan('multisession'); foo = lapply(pkgs, function(x) bincraft::build_binary_package(x, is_debug = FALSE, force = FALSE, s3_endpoint = 'https://hel1.your-objectstorage.com', s3_region = 'hel1', s3_bucket = 'devxy-r-package-binaries-hel1', s3_access_key_id = Sys.getenv('HETZNER_S3_ACCESS_KEY_K3S'), s3_secret_access_key = Sys.getenv('HETZNER_S3_SECRET_KEY_K3S'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'r_binaries', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE))"
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# hanging: 'doBy', 'IDPmisc', 'frailtypack', 'afex'
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backend_options:
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kubernetes:
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resources:
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requests:
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memory: 5Gi
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cpu: 1000m
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limits:
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memory: 20Gi
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cpu: 2000m
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nodeSelector:
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kubernetes.io/arch: ${ARCH}
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tolerations:
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- key: 'CI'
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operator: 'Equal'
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value: 'true'
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effect: 'NoSchedule'
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