build-cran-binaries/.crow/build-all-versions-arm64.yaml

### Required extra vars
# ARCH (amd64)
# OS (alpine)
# OS_VERSION (3.22)
# R_VERSION (4.5)
# echo "c('RInno','KeyboardSimulator','R2PPT','RWinEdt','blatr','excel.link','spectrino','taskscheduleR','MDSGUI','BiplotGUI','R2wd','rFUSION','MediaNews','doBy','IDPmisc','frailtypack','afex','FrF2','DoE.base','agricolae','doFuture','fscaret','PHYLOGR','seewave','pls','relaimpo','geepack','gggenes','NPCirc','repmis','PNDSIBGE','lidR','poismf','neonstore','MachineShop','mvst','MacBehaviour','mcmcderive','RGIFT','KnowBR','netmeta','spdep','sf','Rfast','compareGroups','ff','GsymPoint','RcppDynProg','comtradr','RcppDynProg','FD','PearsonDS','DCluster','gRc','mixlm','geospt','fdth','ffmanova','fiery','ffscrapr','cold','fiery','RcmdrPlugin.DoE','RcmdrPlugin.NMBU')" | base64
# crow pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.22 --var R_VERSION=4.5 --var task=build-all-arm64 --var K8S_INSTANCE_TYPE=cax41 --branch=main --var SKIP_PKGS=YygnUklubm8nLCdLZXlib2FyZFNpbXVsYXRvcicsJ1IyUFBUJywnUldpbkVkdCcsJ2JsYXRyJywnZXhjZWwubGluaycsJ3NwZWN0cmlubycsJ3Rhc2tzY2hlZHVsZVInLCdNRFNHVUknLCdCaXBsb3RHVUknLCdSMndkJywnckZVU0lPTicsJ01lZGlhTmV3cycsJ2RvQnknLCdJRFBtaXNjJywnZnJhaWx0eXBhY2snLCdhZmV4JywnRnJGMicsJ0RvRS5iYXNlJywnYWdyaWNvbGFlJywnZG9GdXR1cmUnLCdmc2NhcmV0JywnUEhZTE9HUicsJ3NlZXdhdmUnLCdwbHMnLCdyZWxhaW1wbycsJ2dlZXBhY2snLCdnZ2dlbmVzJywnTlBDaXJjJywncmVwbWlzJywnUE5EU0lCR0UnLCdsaWRSJywncG9pc21mJywnbmVvbnN0b3JlJywnTWFjaGluZVNob3AnLCdtdnN0JywnTWFjQmVoYXZpb3VyJywnbWNtY2Rlcml2ZScsJ1JHSUZUJywnS25vd0JSJywnbmV0bWV0YScsJ3NwZGVwJywnc2YnLCdSZmFzdCcsJ2NvbXBhcmVHcm91cHMnLCdmZicsJ0dzeW1Qb2ludCcsJ1JjcHBEeW5Qcm9nJywnY29tdHJhZHInLCdSY3BwRHluUHJvZycsJ0ZEJywnUGVhcnNvbkRTJywnRENsdXN0ZXInLCdnUmMnLCdtaXhsbScsJ2dlb3NwdCcsJ2ZkdGgnLCdmZm1hbm92YScsJ2ZpZXJ5JywnZmZzY3JhcHInLCdjb2xkJywnZmllcnknLCdSY21kclBsdWdpbi5Eb0UnLCdSY21kclBsdWdpbi5OTUJVJykK --log-level=info 7
# crow pipeline create --var ARCH=arm64 --var OS=redhat --var OS_VERSION=10 --var R_VERSION=4.5 --var task=build-all-arm64 --var K8S_INSTANCE_TYPE=cax41 --var SKIP_PKGS="c('RInno', 'KeyboardSimulator', 'R2PPT', 'RWinEdt', 'blatr', 'excel.link', 'spectrino', 'taskscheduleR', 'MDSGUI', 'BiplotGUI', 'R2wd', 'rFUSION', 'MediaNews', 'rFUSION')" --branch=main --log-level=info 7
# woodpecker-cli pipeline create --var ARCH=arm64 --var OS=alpine --var OS_VERSION=3.23 --var R_VERSION=4.5 --var task=build-all-arm64 --var K8S_INSTANCE_TYPE=cax41 --branch=main --log-level=info 5
when:
  - event: manual
    evaluate: 'task == "build-all-arm64"'

skip_clone: true

labels:
  agent: gaia

matrix:
  include:
    # - SPLIT_INTO: 5
    #   SPLIT_INDEX: 1
    #   BACKEND: kubernetes
    # - SPLIT_INTO: 5
    #   SPLIT_INDEX: 2
    #   BACKEND: kubernetes
    # - SPLIT_INTO: 5
    #   SPLIT_INDEX: 3
    #   BACKEND: kubernetes
    # - SPLIT_INTO: 5
    #   SPLIT_INDEX: 4
    #   BACKEND: kubernetes
    # - SPLIT_INTO: 5
    #   SPLIT_INDEX: 5
    #   BACKEND: kubernetes
    - SPLIT_INTO: 4
      SPLIT_INDEX: 1
      BACKEND: docker
    - SPLIT_INTO: 4
      SPLIT_INDEX: 2
      BACKEND: docker
    - SPLIT_INTO: 4
      SPLIT_INDEX: 3
      BACKEND: docker
    - SPLIT_INTO: 4
      SPLIT_INDEX: 4
      BACKEND: docker
    # - SPLIT_INTO: 5
    #   SPLIT_INDEX: 5
    #   BACKEND: docker

# depends_on:
#   - build-all-versions-install-deps

steps:
  - name: 'Build binaries'
    image: reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}-${R_VERSION}
    pull: true
    environment:
      RED_HAT_DEV_PW:
        from_secret: RED_HAT_DEV_PW
      HETZNER_S3_ACCESS_KEY_K3S:
        from_secret: HETZNER_S3_ACCESS_KEY_K3S
      HETZNER_S3_SECRET_KEY_K3S:
        from_secret: HETZNER_S3_SECRET_KEY_K3S
      PGPASS:
        from_secret: PGPASS
      REPO_RO_TOKEN:
        from_secret: REPO_RO_TOKEN
      GITHUB_PAT:
        from_secret: GITHUB_PAT
      # normal env vars
      GIT_USER: pat-s
      # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
      R_PKG_CACHE_DIR: /mnt/cache/pkgcache
      R_LIBS_USER: /mnt/cache/R-pkgs
      CCACHE_DIR: /mnt/cache/ccache
      NCPUS: 2
    volumes:
      - ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
    commands:
      - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
      # need to install bincraft here again as the docker backend cannot use the shared volumes
      - R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git", dependencies = TRUE)'
      - R -q -e 'packageVersion("bincraft")'
      - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      # pkgs = readRDS('/mnt/cache/pkgs_arm64.rds');
      - xvfb-run R -q -e "options(crayon.enabled = TRUE, Ncpus = $NCPUS, future.globals.onReference = NULL); pak::sysreqs_db_update(); source('local/packages-to-build.R'); sprintf('Total# of remaining packages:%s', length(pkgs)); pkgs <- split(pkgs, cut(seq_along(pkgs), $SPLIT_INTO, labels = F))[[$SPLIT_INDEX]]; sprintf('# of packages for this job:%s', length(pkgs)); foo = lapply(pkgs, function(x) bincraft::build_binary_package(x, s3_endpoint = 'https://hel1.your-objectstorage.com', s3_region = 'hel1', s3_bucket = 'devxy-r-package-binaries-hel1', s3_access_key_id = Sys.getenv('HETZNER_S3_ACCESS_KEY_K3S'), s3_secret_access_key = Sys.getenv('HETZNER_S3_SECRET_KEY_K3S'), metadata_db_host = 'r-binaries.devxy.io', metadata_db_name = 'build_metadata', metadata_db_table = 'single_builds', metadata_db_user = 'rpkgs', metadata_db_password = Sys.getenv('PGPASS'), metadata_db_sslmode = 'require', metadata_db_port = 15432, archive = TRUE, upload = TRUE, store_build_metadata = TRUE));"
      # archive missed packages
      - R -q -e 'process_unarchived_pkgs(paste(Sys.getenv('OS'), Sys.getenv('OS_VERSION'), Sys.getenv('ARCH'), workers = $NCPUS)'
    backend_options:
      docker:
        resources:
          requests:
            memory: 5Gi
            cpu: 1000m
          limits:
            memory: 20Gi
            cpu: 2000m
      kubernetes:
        resources:
          requests:
            memory: 5Gi
            cpu: 1000m
          limits:
            memory: 20Gi
            cpu: 2000m
        nodeSelector:
          kubernetes.io/arch: ${ARCH}
          node.kubernetes.io/instance-type: ${K8S_INSTANCE_TYPE}
        tolerations:
          - key: 'CI'
            operator: 'Equal'
            value: 'true'
            effect: 'NoSchedule'