Some checks failed
ci/crow/manual/verify-repo-routing/15 Pipeline was successful
ci/crow/manual/verify-repo-routing/3 Pipeline failed
ci/crow/manual/prune-stale-flat-binaries/15 Pipeline was successful
ci/crow/manual/reindex/7 Pipeline was successful
ci/crow/cron/process-updates/1 Pipeline failed
ci/crow/cron/process-updates/7 Pipeline was successful
ci/crow/manual/verify-repo-routing/16 Pipeline was successful
ci/crow/cron/process-updates/9 Pipeline was successful
ci/crow/manual/repair-unsafe-flat-objects/7 Pipeline was successful
ci/crow/cron/process-updates/8 Pipeline was successful
ci/crow/cron/process-updates/2 Pipeline was successful
## Why Everything built so far reasons about the *binaries*: `abi_flat_safety` records what an object's symbols say it can load under, and the index writer drops records on that verdict. None of it proves what a **client** actually receives, which is the product of the CDN rewrite, the per-minor indexes and the `Path:` field acting together. The reprex that found the `base64enc` failure ran on a workstation, could only reach amd64, and did not survive the session. This makes it a pipeline. ## What it does For every slot, under every R minor the image carries, it installs a fixed package set through each URL form the website documents and checks that each one loads in a fresh subprocess. | form | repository | user agent | | --- | --- | --- | | `arch` | `https://cran.rpkgs.com/<arch>/<codename>/latest` | R's own | | `generic` | `https://cran.rpkgs.com/` | the string the website's snippet builds | | `flat` | the arch URL | `curl/8.5.0`, so the edge cannot read an R minor | `arch` and `generic` are contractual, so a failure there fails the run. `flat` measures what a client hiding its R minor is exposed to: it is reported and never fatal, because pruning the flat slot is a separate decision. Two details that matter: - **CRAN is deliberately absent from `repos`.** A package missing from our index must fail loudly rather than be quietly compiled from source, which would hide exactly the gap this exists to find. - **One process per form.** `available.packages()` caches its index in `tempdir()` keyed by repository URL, and `arch` and `flat` share a URL. In a single process the second form would read the first form's index and prove nothing. ## Verification Run against the live repository in `build-env-ubuntu:noble` under R 4.6.0, mid-repair: ``` amd64/noble R 4.6 via arch: 11 of 11 packages usable amd64/noble R 4.6 via generic: 11 of 11 packages usable amd64/noble R 4.6 via flat: 8 of 11 packages usable ``` The three `flat` failures are `Rcpp`, `data.table` and `yaml`, each `Built: R 4.4.3` and each failing `dyn.load()` under 4.6. That is the unrouted-client exposure, measured rather than estimated. The rows also show the routed forms serving a mix of per-minor and flat objects (`Rcpp` at `R 4.6.0`, `stringi` at `R 4.4.3`), which is the intended behaviour: only objects that cannot load cross-minor get a per-minor copy. Reviewed-on: #209
190 lines
5.5 KiB
R
190 lines
5.5 KiB
R
# Check that a published slot serves an installable, loadable binary for the R
|
|
# running this script, through one of the URL forms a user can configure.
|
|
#
|
|
# Rscript local/verify-repo-routing.R <arch> <codename> <form>
|
|
#
|
|
# One process per form on purpose: `available.packages()` caches its index in
|
|
# `tempdir()` keyed by repository URL, and the `arch` and `flat` forms share a
|
|
# URL. In a single process the second form would silently read the first form's
|
|
# index and the run would prove nothing.
|
|
#
|
|
# Forms:
|
|
# arch https://cran.rpkgs.com/<arch>/<codename>/latest with R's own agent
|
|
# generic https://cran.rpkgs.com/ with an agent naming the distribution
|
|
# flat the arch URL with a curl agent, so the edge cannot read an R minor
|
|
# from the request and the flat slot answers instead of a per-minor
|
|
# one
|
|
#
|
|
# `arch` and `generic` are contractual: they are what the website tells people
|
|
# to configure, so a failure there fails the run. `flat` measures what a client
|
|
# hiding its R minor is exposed to; it is reported and never fatal.
|
|
|
|
args <- commandArgs(trailingOnly = TRUE)
|
|
if (length(args) != 3L) {
|
|
stop("usage: verify-repo-routing.R <arch> <codename> <form>", call. = FALSE)
|
|
}
|
|
arch <- args[[1L]]
|
|
codename <- args[[2L]]
|
|
form <- args[[3L]]
|
|
|
|
# Compiled packages that exercise the R C API broadly, plus one pure-R package
|
|
# as a control: if `brew` fails too, the problem is the repository rather than
|
|
# the ABI.
|
|
PACKAGES <- c(
|
|
"Rcpp",
|
|
"data.table",
|
|
"stringi",
|
|
"xml2",
|
|
"curl",
|
|
"jsonlite",
|
|
"digest",
|
|
"base64enc",
|
|
"yaml",
|
|
"lobstr",
|
|
"brew"
|
|
)
|
|
|
|
arch_url <- sprintf("https://cran.rpkgs.com/%s/%s/latest", arch, codename)
|
|
|
|
# The agent the website's generic snippet builds, so this exercises the string
|
|
# real users send rather than an approximation of it.
|
|
generic_agent <- function() {
|
|
os_release <- readLines("/etc/os-release", warn = FALSE)
|
|
field <- function(key) {
|
|
line <- grep(sprintf("^%s=", key), os_release, value = TRUE)
|
|
if (length(line) == 0L) {
|
|
return("")
|
|
}
|
|
gsub('"', "", sub("^[^=]+=", "", line[[1L]]))
|
|
}
|
|
os <- paste(field("NAME"), field("VERSION_ID"))
|
|
codename_id <- field("VERSION_CODENAME")
|
|
if (nzchar(codename_id)) {
|
|
os <- sprintf("%s; codename=%s", os, codename_id)
|
|
}
|
|
sprintf(
|
|
"R/%s (%s) (%s)",
|
|
getRversion(),
|
|
os,
|
|
paste(R.version["platform"], R.version["arch"], R.version["os"])
|
|
)
|
|
}
|
|
|
|
settings <- switch(
|
|
form,
|
|
arch = list(repo = arch_url, agent = getOption("HTTPUserAgent")),
|
|
generic = list(repo = "https://cran.rpkgs.com/", agent = generic_agent()),
|
|
flat = list(repo = arch_url, agent = "curl/8.5.0"),
|
|
stop(sprintf("unknown form '%s'", form), call. = FALSE)
|
|
)
|
|
|
|
# No CRAN in `repos`: a package missing from our index must fail loudly rather
|
|
# than be quietly compiled from source, which would hide exactly the gap this
|
|
# script exists to find.
|
|
options(HTTPUserAgent = settings$agent, repos = c(rpkgs = settings$repo))
|
|
|
|
r_minor <- paste(getRversion()[1L, 1:2], collapse = ".")
|
|
rscript <- file.path(R.home("bin"), "Rscript")
|
|
|
|
emit <- function(package, status, built = "", secs = NA_real_) {
|
|
cat(
|
|
sprintf(
|
|
"ROW\t%s\t%s\t%s\t%s\t%s\t%s\t%s\n",
|
|
form,
|
|
arch,
|
|
codename,
|
|
r_minor,
|
|
package,
|
|
status,
|
|
sprintf("%s|%.1fs", built, secs)
|
|
)
|
|
)
|
|
}
|
|
|
|
# `library()` in this process would abort the whole run on a bad `dyn.load()`,
|
|
# and the point of the exercise is to survive that and report it.
|
|
loads <- function(package, lib) {
|
|
status <- suppressWarnings(system2(
|
|
rscript,
|
|
c("-e", shQuote(sprintf('library("%s")', package))),
|
|
env = sprintf("R_LIBS=%s", lib),
|
|
stdout = FALSE,
|
|
stderr = FALSE
|
|
))
|
|
identical(as.integer(status), 0L)
|
|
}
|
|
|
|
built_field <- function(package, lib) {
|
|
desc <- file.path(lib, package, "DESCRIPTION")
|
|
if (!file.exists(desc)) {
|
|
return("")
|
|
}
|
|
value <- read.dcf(desc, fields = "Built")[[1L]]
|
|
if (is.na(value)) "" else sub(";.*$", "", value)
|
|
}
|
|
|
|
available <- tryCatch(
|
|
rownames(available.packages()),
|
|
error = function(e) {
|
|
message(sprintf(
|
|
"index unreadable at %s: %s",
|
|
settings$repo,
|
|
conditionMessage(e)
|
|
))
|
|
character()
|
|
}
|
|
)
|
|
|
|
failures <- 0L
|
|
for (package in PACKAGES) {
|
|
if (!package %in% available) {
|
|
emit(package, "MISSING_FROM_INDEX")
|
|
failures <- failures + 1L
|
|
next
|
|
}
|
|
|
|
lib <- file.path(tempdir(), sprintf("lib-%s-%s", form, package))
|
|
dir.create(lib, showWarnings = FALSE, recursive = TRUE)
|
|
started <- Sys.time()
|
|
ok <- tryCatch(
|
|
{
|
|
# Hard dependencies come from the same repository and must be present
|
|
# for `R CMD INSTALL` to succeed, so they are installed too; Suggests are
|
|
# not, since a missing one does not stop a package loading.
|
|
install.packages(
|
|
package,
|
|
lib = lib,
|
|
dependencies = c("Depends", "Imports", "LinkingTo"),
|
|
quiet = TRUE
|
|
)
|
|
package %in% rownames(installed.packages(lib.loc = lib))
|
|
},
|
|
error = function(e) FALSE
|
|
)
|
|
secs <- as.numeric(difftime(Sys.time(), started, units = "secs"))
|
|
|
|
if (!ok) {
|
|
emit(package, "INSTALL_FAILED", secs = secs)
|
|
failures <- failures + 1L
|
|
} else if (!loads(package, lib)) {
|
|
emit(package, "LOAD_FAILED", built_field(package, lib), secs)
|
|
failures <- failures + 1L
|
|
} else {
|
|
emit(package, "OK", built_field(package, lib), secs)
|
|
}
|
|
unlink(lib, recursive = TRUE, force = TRUE)
|
|
}
|
|
|
|
message(sprintf(
|
|
"%s/%s R %s via %s: %d of %d packages usable",
|
|
arch,
|
|
codename,
|
|
r_minor,
|
|
form,
|
|
length(PACKAGES) - failures,
|
|
length(PACKAGES)
|
|
))
|
|
|
|
if (failures > 0L && !identical(form, "flat")) {
|
|
quit(status = 1L)
|
|
}
|