pat-s
d558e27c11
## Summary
Builds R-minor-sensitive CRAN packages once per installed R minor version (into per-minor S3 slots `…/contrib/<x.y>/`) and everything else once into the generic slot, driven by bincraft 4.2.0's ABI classifier. Both the full and iterative pipelines are covered.
## What's in here
**Detection / precompute**
- `local/r-minor-helpers.R` — pure `classify_from_metadata()` (NeedsCompilation / risky `LinkingTo`) + `parse_build_args()`, with unit tests.
- `local/packages-to-build.R` — adds a per-package `r_minor_sensitive` flag: cheap CRAN-metadata rules first, source download + `bincraft::needs_per_minor_recompile()` only for the ambiguous compiled subset (fail-safe to sensitive). Classified once per package, applied to all versions.
**Full build**
- `local/build-all.R` — passes the per-row `is_r_minor_sensitive` flag; new `--sensitive-only` mode builds just the risky subset.
- `.crow/build-all-versions-{amd64,arm64}.yaml` — install-deps persists the sensitive subset; build step runs a sensitive-only pass under each non-primary `/opt/R/*` minor; new step uploads the generic index plus a per-minor index for each minor.
**Iterative build**
- All 14 `.crow/process-updates-*.yaml` — primary pass uses `r_minor_detection = 'classifier'`; a sensitive-only multi-R pass builds risky updates under each other minor; per-minor index upload added.
**Tooling / housekeeping**
- Pins bincraft `v4.1.1` → `v4.2.0` across all workflows; removes the superseded standalone `build-r-minor-sensitive-packages.yaml`.
- Adds prek/pre-commit hooks (prettier, markdownlint, editorconfig-checker, yamllint, air) and applies them repo-wide; excludes the verbatim GPL `LICENSE.md` and auxiliary shell scripts.
- Design + implementation docs under `docs/superpowers/`.
## Requires before merge
- A `v4.2.0` git tag must be pushed on the bincraft repo (codefloe.com/rpkgs/bincraft) — the workflow install steps pin `@v4.2.0`. The full-build install-deps clones `main`, so it is unaffected.
Reviewed-on: #84
77 lines
2 KiB
R
77 lines
2 KiB
R
### Scope: Lists packages which are missing any DB entry compared to what is available on CRAN
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library(bincraft)
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library(dplyr)
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library(DBI)
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con <- DBI::dbConnect(
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RPostgres::Postgres(),
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dbname = "build_metadata",
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host = "r-binaries.devxy.io",
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port = 15432,
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user = "r_binaries",
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password = Sys.getenv("PGPASS"),
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sslmode = "require"
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)
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`%nin%` <- Negate(`%in%`)
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new_packages <- get_new_cran_packages(lubridate::interval(
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lubridate::today(),
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lubridate::today() - 2
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))$name
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removed_pkgs <- get_removed_cran_packages(lubridate::interval(
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lubridate::today(),
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lubridate::today() - 2
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))$name
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# filter windows packages
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# filter new packages from the last X days
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cran_pkgs <- unique(
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tools::CRAN_package_db() |>
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filter(`OS_type` != "windows" | is.na(`OS_type`)) |>
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filter(`Package` %nin% new_packages) |>
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pull(Package)
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)
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arch <- "arm64"
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platform <- "redhat-8"
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platform <- "redhat-9"
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platform <- "alpine-320"
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platform <- "alpine-321"
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platform <- "ubuntu-2204"
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platform <- "ubuntu-2404"
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data <- dbGetQuery(
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con,
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"SELECT name FROM single_builds WHERE platform = $1 AND arch = $2 and removed = FALSE;",
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params = list(platform, arch)
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)
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removed_pkgs = get_removed_cran_packages(lubridate::interval(
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lubridate::today(),
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lubridate::today() - 2
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))$name
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pkgs_db <- unique(data$name)
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pkgs_db = setdiff(pkgs_db, removed_pkgs)
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pkgs <- setdiff(cran_pkgs, pkgs_db)
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formatted_pkgs <- gsub(
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'"',
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"'",
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capture.output(dput(as.character(na.omit(pkgs[1:length(pkgs)]))))
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)
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formatted_pkgs_one_line <- paste(formatted_pkgs, collapse = " ")
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cat(formatted_pkgs_one_line, "\n", sep = "")
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length(pkgs)
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clipr::write_clip(formatted_pkgs_one_line)
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# sapply(pkgs, function(x) which(grepl(sprintf("^%s$", x), cran_pkgs)))
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s3fs::s3_file_system(
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aws_access_key_id = Sys.getenv("HETZNER_S3_ACCESS_KEY_K3S"),
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aws_secret_access_key = Sys.getenv("HETZNER_S3_SECRET_KEY_K3S"),
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endpoint = "https://hel1.your-objectstorage.com",
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region_name = "hel1",
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)
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s3fs::s3_dir_delete("devxy-r-package-binaries-docs/_site")
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