pat-s
930a4acd12bincraft v5.5.1 dropped lubridate, dplyr, purrr, data.table and others from its imports, so the pipelines' own calls now depend on whatever the build-env image's site library or the shared R_LIBS_USER cache happens to hold. The arm64 redhat:9 image has no progressr under R 4.4.3, which fails every process-cran-updates-redhat-9-arm64 run since v5.5.1. - Install progressr and lubridate for process-updates, which call them inline. - Install purrr for packages-to-build.R and data.table for the weekly audit. - Drop the unused dplyr and progressr library() calls from packages-to-build.R. - Install RPostgres in every pipeline that talks to the metadata DB, since bincraft silently skips the DB (and the per-minor index aborts) without it. - Reinstall bincraft in the prune re-index step, whose /tmp library does not survive from the prune step.
97 lines
3.4 KiB
YAML
97 lines
3.4 KiB
YAML
# Consolidated install-deps for build-all (both arches in one file).
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# Triggered together with build-all-versions; `target_arch` routes the matrix.
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# Variables are declared so the manual-run form exposes them (crow #1165);
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# they are merged with build-all-versions' identical declarations.
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variables:
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# Gates this pipeline. A manual pipeline creation instantiates every file in
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# .crow/, and a declared default is applied even when the run never passed
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# this variable, so the default must be a value that matches no matrix row.
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target_arch:
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description: 'Architecture to build, or "none" to run nothing.'
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options:
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- none
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- amd64
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- arm64
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default: none
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OS:
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description: 'Base OS image name.'
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options:
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- alpine
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- redhat
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- ubuntu
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default: alpine
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OS_VERSION:
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description: 'OS image tag. Must match OS (alpine: 3.24; redhat: 8/9/10; ubuntu: jammy/noble).'
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options:
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- '3.24'
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- '8'
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- '9'
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- '10'
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- 'jammy'
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- 'noble'
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default: '3.24'
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R_VERSION:
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description: 'Primary R version under /opt/R.'
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options:
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- 4.5.3
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- 4.4.3
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default: 4.5.3
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when:
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- event: manual
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evaluate: 'target_arch == "${ARCH}"'
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skip_clone: true
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labels:
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platform: linux/${ARCH}
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group: rpkgs-${ARCH}
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matrix:
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include:
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- ARCH: amd64
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- ARCH: arm64
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steps:
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- name: 'Install deps and bincraft'
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image: 'reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}'
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pull: true
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environment:
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OTEL_R_TRACES_EXPORTER: none
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OTEL_R_LOGS_EXPORTER: none
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OTEL_R_METRICS_EXPORTER: none
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REPO_RO_TOKEN:
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from_secret: REPO_RO_TOKEN
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GITHUB_PAT:
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from_secret: GITHUB_PAT
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B2_S3_ACCESS_KEY:
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from_secret: B2_S3_ACCESS_KEY
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B2_S3_SECRET_KEY:
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from_secret: B2_S3_SECRET_KEY
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PGPASS:
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from_secret: PGPASS
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R_LIBS_USER: /mnt/cache/R-pkgs
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# Keep uvr's downloads and extracted-package entries on the persistent
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# volume instead of the container-local ~/.uvr default.
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UVR_CACHE_DIR: /mnt/cache/uvr/cache
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UVR_PACKAGES_DIR: /mnt/cache/uvr/packages
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CCACHE_DIR: /mnt/cache/ccache
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volumes:
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- ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
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commands:
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# one-time full wipe to fix corrupted .so files from previous failed builds
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# - rm -rf /mnt/cache/R-pkgs
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- mkdir -p /mnt/cache/uvr/cache /mnt/cache/uvr/packages /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
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- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
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# Pin the same bincraft version the build steps use, so the precomputed
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# snapshot and the per-agent library stay consistent across the pipeline.
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- /opt/R/$R_VERSION/bin/Rscript local/install-bincraft.R
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- UVR_R_BIN=/opt/R/$R_VERSION/bin/R local/uvr-install.sh RPostgres s3fs data.table future jsonlite purrr
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- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
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- /opt/R/$R_VERSION/bin/R -q -e "source('local/packages-to-build.R'); saveRDS(pkgs, '/mnt/cache/packages/pkgs_to_build.rds'); saveRDS(pkgs[r_minor_sensitive == TRUE], '/mnt/cache/packages/r_minor_sensitive_pkgs.rds'); sprintf('Precomputed %s package versions (%s r-minor-sensitive)', nrow(pkgs), nrow(pkgs[r_minor_sensitive == TRUE]))"
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backend_options:
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docker:
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resources:
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requests:
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memory: 5Gi
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cpu: 1000m
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