pat-s
930a4acd12bincraft v5.5.1 dropped lubridate, dplyr, purrr, data.table and others from its imports, so the pipelines' own calls now depend on whatever the build-env image's site library or the shared R_LIBS_USER cache happens to hold. The arm64 redhat:9 image has no progressr under R 4.4.3, which fails every process-cran-updates-redhat-9-arm64 run since v5.5.1. - Install progressr and lubridate for process-updates, which call them inline. - Install purrr for packages-to-build.R and data.table for the weekly audit. - Drop the unused dplyr and progressr library() calls from packages-to-build.R. - Install RPostgres in every pipeline that talks to the metadata DB, since bincraft silently skips the DB (and the per-minor index aborts) without it. - Reinstall bincraft in the prune re-index step, whose /tmp library does not survive from the prune step.
176 lines
5.1 KiB
YAML
176 lines
5.1 KiB
YAML
# Record, per flat-slot object, whether it loads under every supported R minor.
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#
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# `union_index_records()` keeps a carried flat record when that object is
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# recorded safe and drops it otherwise. Objects uploaded before that record
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# existed have no verdict, so they are dropped: a full re-index removed roughly
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# 2000 records per per-minor index (16398 across the 4.4 indexes, 20076 across
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# 4.5, 15532 across 4.6), each one resolving to CRAN source for clients the
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# routing serves correctly.
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#
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# This inspects what is already in the bucket and writes the verdict, which is
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# what restores that coverage. Decided by symbols rather than heuristics: a
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# binary fails at dyn.load() under minor M exactly when it references a symbol M
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# does not export, and the volatile set is derived by diffing the R builds in
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# the image.
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#
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# Re-running is cheap; recorded objects are skipped.
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#
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# crow pipeline create devxy/build-cran-binaries --var flat_safety=all
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variables:
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# A manual pipeline creation instantiates every file in .crow/, so the default
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# must match no matrix row.
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flat_safety:
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description: "Inspect target: a specific <os>-<arch>, 'all' for every slot, or 'none'."
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options:
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- none
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- all
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- alpine-323-amd64
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- alpine-323-arm64
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- alpine-324-amd64
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- alpine-324-arm64
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- redhat-8-amd64
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- redhat-8-arm64
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- redhat-9-amd64
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- redhat-9-arm64
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- redhat-10-amd64
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- redhat-10-arm64
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- ubuntu-2204-amd64
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- ubuntu-2204-arm64
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- ubuntu-2404-amd64
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- ubuntu-2404-arm64
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- ubuntu-2604-amd64
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- ubuntu-2604-arm64
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default: none
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FLAT_SAFETY_LIMIT:
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description: 'Inspect at most this many objects per slot (0 = no limit).'
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default: '0'
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when:
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- event: manual
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evaluate: 'flat_safety == "all" || flat_safety == "${OS}-${ARCH}"'
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skip_clone: true
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labels:
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group: rpkgs-${ARCH}
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matrix:
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include:
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- OS: alpine-323
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ARCH: amd64
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R_VERSION: 4.5.3
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IMG: alpine:3.23
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- OS: alpine-323
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ARCH: arm64
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R_VERSION: 4.5.3
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IMG: alpine:3.23
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- OS: alpine-324
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ARCH: amd64
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R_VERSION: 4.5.3
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IMG: alpine:3.24
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- OS: alpine-324
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ARCH: arm64
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R_VERSION: 4.5.3
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IMG: alpine:3.24
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- OS: redhat-8
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ARCH: amd64
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R_VERSION: 4.4.3
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IMG: redhat:8
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- OS: redhat-8
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ARCH: arm64
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R_VERSION: 4.4.3
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IMG: redhat:8
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- OS: redhat-9
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ARCH: amd64
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R_VERSION: 4.4.3
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IMG: redhat:9
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- OS: redhat-9
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ARCH: arm64
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R_VERSION: 4.4.3
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IMG: redhat:9
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- OS: redhat-10
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ARCH: amd64
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R_VERSION: 4.5.3
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IMG: redhat:10
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- OS: redhat-10
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ARCH: arm64
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R_VERSION: 4.5.3
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IMG: redhat:10
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- OS: ubuntu-2204
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ARCH: amd64
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R_VERSION: 4.4.3
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IMG: ubuntu:jammy
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- OS: ubuntu-2204
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ARCH: arm64
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R_VERSION: 4.4.3
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IMG: ubuntu:jammy
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- OS: ubuntu-2404
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ARCH: amd64
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R_VERSION: 4.4.3
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IMG: ubuntu:noble
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- OS: ubuntu-2404
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ARCH: arm64
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R_VERSION: 4.4.3
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IMG: ubuntu:noble
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- OS: ubuntu-2604
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ARCH: amd64
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R_VERSION: 4.4.3
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IMG: ubuntu:resolute
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- OS: ubuntu-2604
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ARCH: arm64
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R_VERSION: 4.4.3
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IMG: ubuntu:resolute
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steps:
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- name: 'Inspect flat objects and record safety'
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image: reg.devxy.io/rpkgs/build-env-${IMG}
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pull: true
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environment:
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OTEL_R_TRACES_EXPORTER: none
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OTEL_R_LOGS_EXPORTER: none
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OTEL_R_METRICS_EXPORTER: none
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RED_HAT_DEV_PW:
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from_secret: RED_HAT_DEV_PW
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B2_S3_ACCESS_KEY:
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from_secret: B2_S3_ACCESS_KEY
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B2_S3_SECRET_KEY:
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from_secret: B2_S3_SECRET_KEY
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PGPASS:
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from_secret: PGPASS
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REPO_RO_TOKEN:
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from_secret: REPO_RO_TOKEN
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# bincraft reads the DESCRIPTION of every new or replaced tarball from
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# the CRAN mirror on raw.githubusercontent.com, and authenticates with
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# this token when it is set. A slot whose published index cannot be read
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# is re-read in full, ~25k requests, which the anonymous rate limit would
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# cut short.
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GITHUB_PAT:
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from_secret: GITHUB_PAT
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GIT_USER: pat-s
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R_LIBS_USER: /tmp/R-pkgs
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FLAT_SAFETY_ARCH: ${ARCH}
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FLAT_SAFETY_LIMIT: ${FLAT_SAFETY_LIMIT}
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commands:
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- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
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- mkdir -p /tmp/R-pkgs
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- /opt/R/$R_VERSION/bin/Rscript local/install-bincraft.R
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- UVR_R_BIN=/opt/R/$R_VERSION/bin/R local/uvr-install.sh RPostgres
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- |
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set -eu
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LIMIT=""
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if [ "$$FLAT_SAFETY_LIMIT" != "0" ]; then
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LIMIT="$$FLAT_SAFETY_LIMIT"
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fi
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# The codename comes from the image's /etc/os-release, exactly as the
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# re-index step derives it, so it cannot drift from the matrix.
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CODENAME=$(/opt/R/$R_VERSION/bin/Rscript -e 'cat(bincraft::set_codename(NULL))')
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echo "slot: $$FLAT_SAFETY_ARCH/$$CODENAME"
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/opt/R/$R_VERSION/bin/Rscript local/backfill-flat-safety.R \
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"$$FLAT_SAFETY_ARCH" "$$CODENAME" $$LIMIT
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backend_options:
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docker:
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resources:
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requests:
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memory: 4Gi
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cpu: 1000m
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