pat-s
930a4acd12bincraft v5.5.1 dropped lubridate, dplyr, purrr, data.table and others from its imports, so the pipelines' own calls now depend on whatever the build-env image's site library or the shared R_LIBS_USER cache happens to hold. The arm64 redhat:9 image has no progressr under R 4.4.3, which fails every process-cran-updates-redhat-9-arm64 run since v5.5.1. - Install progressr and lubridate for process-updates, which call them inline. - Install purrr for packages-to-build.R and data.table for the weekly audit. - Drop the unused dplyr and progressr library() calls from packages-to-build.R. - Install RPostgres in every pipeline that talks to the metadata DB, since bincraft silently skips the DB (and the per-minor index aborts) without it. - Reinstall bincraft in the prune re-index step, whose /tmp library does not survive from the prune step.
91 lines
3.1 KiB
YAML
91 lines
3.1 KiB
YAML
# Populate the ABI classifier cache for packages that predate the per-minor scheme.
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#
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# bincraft decides whether a flat binary may be carried into a per-minor index
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# from its risky-package set. That set is now the union of the per-minor tarball
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# scan and the `abi_classification` cache, but the cache only holds verdicts for
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# packages that passed through the build pipeline after the scheme existed.
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# Everything older has no verdict, and no verdict means "carry it" - which is how
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# a base64enc built under R 4.4.3 reached R 4.6 clients and died at dyn.load()
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# on SETLENGTH.
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#
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# The verdict is computed from the package source, so it does not depend on OS,
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# arch or R minor: one run populates the cache for every slot. The arch/codename
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# below only choose which flat index to enumerate.
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#
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# Re-running is cheap. Cached verdicts are returned without touching the network,
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# so a second run costs one query per package and downloads only what is still
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# unclassified.
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#
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# crow pipeline create devxy/build-cran-binaries --var backfill_abi=run
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variables:
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# A manual pipeline creation instantiates every file in .crow/, so the default
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# must be a value the `when` clause rejects.
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backfill_abi:
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description: "Set to 'run' to classify the flat index into the ABI cache."
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options:
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- none
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- run
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default: none
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BACKFILL_ARCH:
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description: 'Arch of the flat index to enumerate.'
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options:
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- amd64
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- arm64
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default: amd64
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BACKFILL_CODENAME:
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description: 'Codename of the flat index to enumerate.'
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default: resolute
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BACKFILL_LIMIT:
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description: 'Classify at most this many packages (0 = no limit).'
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default: '0'
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when:
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- event: manual
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evaluate: 'backfill_abi == "run"'
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skip_clone: true
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labels:
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group: rpkgs-amd64
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steps:
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- name: 'Classify the flat index into the ABI cache'
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image: reg.devxy.io/rpkgs/build-env-ubuntu:resolute
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pull: true
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environment:
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OTEL_R_TRACES_EXPORTER: none
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OTEL_R_LOGS_EXPORTER: none
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OTEL_R_METRICS_EXPORTER: none
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PGPASS:
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from_secret: PGPASS
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REPO_RO_TOKEN:
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from_secret: REPO_RO_TOKEN
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GITHUB_PAT:
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from_secret: GITHUB_PAT
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GIT_USER: pat-s
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# Pipeline variables are substituted into the YAML, not exported, so they
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# have to be bound here to be readable as env vars in the script below.
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BACKFILL_ARCH: ${BACKFILL_ARCH}
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BACKFILL_CODENAME: ${BACKFILL_CODENAME}
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BACKFILL_LIMIT: ${BACKFILL_LIMIT}
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R_LIBS_USER: /tmp/R-pkgs
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commands:
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- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
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- mkdir -p /tmp/R-pkgs
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- /opt/R/4.5.3/bin/Rscript local/install-bincraft.R
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- UVR_R_BIN=/opt/R/4.5.3/bin/R local/uvr-install.sh RPostgres
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- |
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set -eu
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LIMIT=""
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if [ "$$BACKFILL_LIMIT" != "0" ]; then
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LIMIT="$$BACKFILL_LIMIT"
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fi
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/opt/R/4.5.3/bin/Rscript local/backfill-abi-classification.R \
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"$$BACKFILL_ARCH" "$$BACKFILL_CODENAME" $$LIMIT
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backend_options:
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docker:
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resources:
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requests:
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memory: 4Gi
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cpu: 1000m
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