Implement steps 3 + 4 of issue #115 on top of the failure classifier, now that bincraft v4.4.3 applies registry patches/makevars/configure_args to the target build (not just dependencies), so a trial patched build is meaningful. - refactor the classify helpers to expose a pure build_triage_report() and a list-returning entry builder; failing-builds-report.R now renders from it - add local/propose-patches.R (step 3, "propose, do not apply"): emit a pre-filled registry.json entry for each classified, safe, unregistered failure, validate the candidate set against a temporary merged registry, and (only on request) --write it plus a proposals ledger, or --open-issue a Forgejo tracking issue; the human gate and validator/trial-build acceptance stay, and novel source diffs / unknown signatures are never proposed - add local/trial-build-patch.R: isolated bincraft build of one package with the registry applied (no upload/archive/metadata) as the pre-merge gate - add local/proposal-tracking.R + local/proposal-tracking-lib.R (step 4): signature hit rate, proposed-vs-merged, and retirement candidates, with the pure helpers covered by tests - teach validate-patches.R optional PATCH_DIR/REGISTRY_FILE overrides so a candidate registry can be validated without touching the real one - document the propose/trial-build/tracking workflow in local/patches/README.md
310 lines
11 KiB
R
310 lines
11 KiB
R
# Pure, side-effect-free helpers for triaging `single_builds` failures:
|
|
# normalise a raw `error_text` into a stable fingerprint, and classify it
|
|
# against a seed set of known failure signatures (issue #115, steps 1 + 2).
|
|
#
|
|
# Kept free of DB/IO so it can be sourced by both `failing-builds-report.R`
|
|
# and the unit tests in `local/tests/`.
|
|
|
|
# ---------------------------------------------------------------------------
|
|
# Signature table
|
|
# ---------------------------------------------------------------------------
|
|
# Each rule maps a recurring compile/link/load error to a suggested fix tier.
|
|
# `pattern` is a case-insensitive regex matched against the raw `error_text`.
|
|
# `auto` marks whether the fix is a *known lever* safe to auto-propose as a PR
|
|
# (env / makevars / an already-curated package-specific patch). Rules that
|
|
# would require a brand-new source diff for a previously-unseen package stay
|
|
# `auto = FALSE` -> classified, but always routed to human triage, per the
|
|
# issue's guardrail against shipping autonomous novel source diffs.
|
|
#
|
|
# Seeded from the existing registry entries and known recurring failures; add
|
|
# a row here as new signatures are confirmed. Order matters: the first match
|
|
# wins, so keep more specific patterns above broader ones.
|
|
build_signatures <- function() {
|
|
list(
|
|
list(
|
|
id = "tbb-stddef-removed",
|
|
label = "removed TBB header tbb/tbb_stddef.h",
|
|
pattern = "tbb/tbb_stddef\\.h.*No such file",
|
|
tier = "makevars",
|
|
confidence = "high",
|
|
auto = TRUE,
|
|
fix = "add CPPFLAGS += -DTBB_INTERFACE_NEW so the source stops including the removed tbb/tbb_stddef.h header",
|
|
example = "StanHeaders / rstan (#114)",
|
|
registry = list(
|
|
env = NULL,
|
|
configure_args = NULL,
|
|
makevars = list(CPPFLAGS = "-DTBB_INTERFACE_NEW"),
|
|
patch = NULL,
|
|
reason = "package includes the removed tbb/tbb_stddef.h; -DTBB_INTERFACE_NEW selects the new oneTBB interface path"
|
|
)
|
|
),
|
|
list(
|
|
id = "rcppparallel-bundled-tbb",
|
|
label = "bundled Intel TBB build fails/hangs (musl / new g++)",
|
|
pattern = "USE_TBB[^\\n]*(not supported|unsupported)|RcppParallel[^\\n]*TBB|tbb[^\\n]*(Alpine|musl)",
|
|
tier = "patch",
|
|
confidence = "high",
|
|
auto = TRUE,
|
|
fix = "apply the curated RcppParallel/disable-tbb.patch so the bundled TBB build is skipped and the TinyThread backend is used",
|
|
example = "RcppParallel",
|
|
registry = list(
|
|
env = NULL,
|
|
configure_args = NULL,
|
|
makevars = NULL,
|
|
patch = "RcppParallel/disable-tbb.patch",
|
|
reason = "bundled Intel TBB build hangs/fails on musl (Alpine) and newer toolchains; patch forces the TinyThread backend"
|
|
)
|
|
),
|
|
list(
|
|
id = "system-libuv-link-leak",
|
|
label = "binary links system libuv (NEEDED libuv.so.1)",
|
|
pattern = "libuv\\.so",
|
|
tier = "patch",
|
|
confidence = "medium",
|
|
# A novel per-package source diff is required to force the vendored lib;
|
|
# never auto-propose, only surface for a human (guardrail).
|
|
auto = FALSE,
|
|
fix = "force the vendored/static library instead of the system one via a human-authored source patch (see fs/force-vendored-libuv.patch as precedent)",
|
|
example = "fs",
|
|
registry = list(
|
|
env = NULL,
|
|
configure_args = NULL,
|
|
makevars = NULL,
|
|
patch = "<package>/force-vendored-<lib>.patch",
|
|
reason = "binary links the system library and fails to dyn.load on consumer machines; force the vendored/static build"
|
|
)
|
|
)
|
|
)
|
|
}
|
|
|
|
# ---------------------------------------------------------------------------
|
|
# Normalisation
|
|
# ---------------------------------------------------------------------------
|
|
# Collapse build-specific noise (temp paths, version numbers, hex addresses,
|
|
# the package name) so the same root cause across packages/platforms/versions
|
|
# maps to one fingerprint bucket.
|
|
normalise_error <- function(error_text, package = NULL) {
|
|
if (length(error_text) == 0L || is.na(error_text) || !nzchar(error_text)) {
|
|
return("")
|
|
}
|
|
x <- as.character(error_text)
|
|
# Package-specific token first (before version/number stripping mangles it).
|
|
if (!is.null(package) && length(package) == 1L && nzchar(package)) {
|
|
# \Q..\E quotes the name literally so metachars (e.g. data.table's dot)
|
|
# are matched verbatim rather than as regex.
|
|
x <- gsub(paste0("\\b\\Q", package, "\\E\\b"), "<pkg>", x, perl = TRUE)
|
|
}
|
|
# R temp dirs/files: /tmp/RtmpAbC123, RtmpXXXX, /tmp/Rtmp.../file123.
|
|
x <- gsub("/tmp/[^ \t\n]*", "<tmp>", x, perl = TRUE)
|
|
x <- gsub("\\bRtmp[A-Za-z0-9]+", "Rtmp<x>", x, perl = TRUE)
|
|
# Hex addresses and version-like number runs.
|
|
x <- gsub("0x[0-9a-fA-F]+", "0x<addr>", x, perl = TRUE)
|
|
x <- gsub("[0-9]+(\\.[0-9]+)+", "<v>", x, perl = TRUE)
|
|
x <- gsub("\\b[0-9]{2,}\\b", "<n>", x, perl = TRUE)
|
|
# Whitespace and case.
|
|
x <- tolower(x)
|
|
x <- gsub("[ \t\r\n]+", " ", x, perl = TRUE)
|
|
trimws(x)
|
|
}
|
|
|
|
# Extract the single most informative line from a multi-line error, then
|
|
# normalise it. This is the grouping key; a short salient line groups far
|
|
# better than the whole (often huge) transcript.
|
|
fingerprint_error <- function(error_text, package = NULL, max_chars = 200L) {
|
|
if (length(error_text) == 0L || is.na(error_text) || !nzchar(error_text)) {
|
|
return("<empty>")
|
|
}
|
|
lines <- strsplit(as.character(error_text), "\n", fixed = TRUE)[[1L]]
|
|
lines <- trimws(lines)
|
|
lines <- lines[nzchar(lines)]
|
|
if (length(lines) == 0L) {
|
|
return("<empty>")
|
|
}
|
|
salient_re <- paste(
|
|
"error:",
|
|
"fatal error:",
|
|
"no such file",
|
|
"undefined reference",
|
|
"cannot find -l",
|
|
"cannot open shared object",
|
|
"configuration failed",
|
|
"non-zero exit",
|
|
"installation of package",
|
|
"compilation failed",
|
|
sep = "|"
|
|
)
|
|
hit <- lines[grepl(salient_re, lines, ignore.case = TRUE)]
|
|
chosen <- if (length(hit) > 0L) hit[[1L]] else lines[[length(lines)]]
|
|
fp <- normalise_error(chosen, package)
|
|
if (nchar(fp) > max_chars) {
|
|
fp <- paste0(substr(fp, 1L, max_chars), "...")
|
|
}
|
|
fp
|
|
}
|
|
|
|
# ---------------------------------------------------------------------------
|
|
# Classification
|
|
# ---------------------------------------------------------------------------
|
|
# Return the first matching signature (as a list) enriched with `matched`, or
|
|
# the unclassified fallback. Never guesses: an unmatched error is routed to a
|
|
# human, not assigned a fix.
|
|
classify_error <- function(error_text, signatures = build_signatures()) {
|
|
txt <- if (length(error_text) == 0L || is.na(error_text)) {
|
|
""
|
|
} else {
|
|
as.character(error_text)
|
|
}
|
|
for (sig in signatures) {
|
|
if (
|
|
nzchar(txt) && grepl(sig$pattern, txt, ignore.case = TRUE, perl = TRUE)
|
|
) {
|
|
sig$matched <- TRUE
|
|
return(sig)
|
|
}
|
|
}
|
|
list(
|
|
id = "unclassified",
|
|
label = "unknown signature",
|
|
tier = NA_character_,
|
|
confidence = NA_character_,
|
|
auto = FALSE,
|
|
fix = "no known signature; flag for human triage",
|
|
example = NA_character_,
|
|
registry = NULL,
|
|
matched = FALSE
|
|
)
|
|
}
|
|
|
|
# Build a suggested registry.json entry (as an R list) for a classified group,
|
|
# filling package/versions/platforms from the observed failures. Only
|
|
# meaningful when the signature carries a `registry` template.
|
|
propose_registry_entry_list <- function(
|
|
signature,
|
|
package,
|
|
platforms,
|
|
versions = "*"
|
|
) {
|
|
if (is.null(signature$registry)) {
|
|
return(NULL)
|
|
}
|
|
tmpl <- signature$registry
|
|
entry <- list(
|
|
package = package,
|
|
versions = versions,
|
|
# I() keeps this a JSON array even when a single platform is affected.
|
|
platforms = I(sort(unique(as.character(platforms))))
|
|
)
|
|
for (k in c("env", "configure_args", "makevars", "patch")) {
|
|
if (!is.null(tmpl[[k]])) {
|
|
entry[[k]] <- tmpl[[k]]
|
|
}
|
|
}
|
|
entry$reason <- tmpl$reason
|
|
entry
|
|
}
|
|
|
|
# Same, rendered as a pretty JSON string.
|
|
propose_registry_entry <- function(
|
|
signature,
|
|
package,
|
|
platforms,
|
|
versions = "*"
|
|
) {
|
|
entry <- propose_registry_entry_list(signature, package, platforms, versions)
|
|
if (is.null(entry)) {
|
|
return(NULL)
|
|
}
|
|
jsonlite::toJSON(entry, auto_unbox = TRUE, pretty = TRUE, null = "null")
|
|
}
|
|
|
|
# Resolve the representative signature for a group by its id, re-attaching the
|
|
# `matched` flag the report/proposer rely on. Unknown ids -> unclassified.
|
|
resolve_signature <- function(sig_id, signatures = build_signatures()) {
|
|
hit <- Filter(function(s) s$id == sig_id, signatures)
|
|
if (length(hit) > 0L) {
|
|
s <- hit[[1L]]
|
|
s$matched <- TRUE
|
|
s
|
|
} else {
|
|
classify_error("", signatures) # unclassified fallback (matched = FALSE)
|
|
}
|
|
}
|
|
|
|
# ---------------------------------------------------------------------------
|
|
# Triage report (shared by the report printer and the patch proposer)
|
|
# ---------------------------------------------------------------------------
|
|
# `failures` is a data.frame with at least: name, platform, arch, error_text.
|
|
# `registered_pkgs` is the set of packages that already carry a registry entry.
|
|
# Returns a list of group records (one per root-cause bucket), ordered by
|
|
# number of affected builds descending. Pure: no IO, no printing.
|
|
build_triage_report <- function(
|
|
failures,
|
|
registered_pkgs = character(0L),
|
|
signatures = build_signatures()
|
|
) {
|
|
if (nrow(failures) == 0L) {
|
|
return(list())
|
|
}
|
|
idx <- seq_len(nrow(failures))
|
|
failures$fingerprint <- vapply(
|
|
idx,
|
|
function(i) fingerprint_error(failures$error_text[[i]], failures$name[[i]]),
|
|
character(1L)
|
|
)
|
|
failures$sig_id <- vapply(
|
|
idx,
|
|
function(i) classify_error(failures$error_text[[i]], signatures)$id,
|
|
character(1L)
|
|
)
|
|
# Group by root cause: classified failures collapse by signature id (same fix
|
|
# candidate is one bucket regardless of log noise); unclassified failures fall
|
|
# back to the fingerprint so distinct unknowns stay separate for discovery.
|
|
failures$group_key <- ifelse(
|
|
failures$sig_id == "unclassified",
|
|
failures$fingerprint,
|
|
failures$sig_id
|
|
)
|
|
groups <- split(failures, failures$group_key)
|
|
groups <- groups[order(-vapply(groups, nrow, integer(1L)))]
|
|
|
|
lapply(unname(groups), function(g) {
|
|
sig_id <- names(sort(table(g$sig_id), decreasing = TRUE))[[1L]]
|
|
sig <- resolve_signature(sig_id, signatures)
|
|
|
|
fp_tab <- sort(table(g$fingerprint), decreasing = TRUE)
|
|
pkgs <- sort(unique(g$name))
|
|
plats <- sort(unique(g$platform))
|
|
arches <- sort(unique(g$arch))
|
|
unregistered <- setdiff(pkgs, registered_pkgs)
|
|
auto_proposable <- isTRUE(sig$auto) && sig$matched
|
|
|
|
proposed <- list()
|
|
if (auto_proposable) {
|
|
for (p in unregistered) {
|
|
proposed[[p]] <- propose_registry_entry_list(
|
|
sig,
|
|
p,
|
|
g$platform[g$name == p]
|
|
)
|
|
}
|
|
}
|
|
|
|
list(
|
|
signature = sig$id,
|
|
label = sig$label,
|
|
matched = sig$matched,
|
|
auto_proposable = auto_proposable,
|
|
tier = sig$tier,
|
|
confidence = sig$confidence,
|
|
suggested_fix = sig$fix,
|
|
fingerprint = names(fp_tab)[[1L]],
|
|
fingerprint_variants = length(fp_tab),
|
|
build_count = nrow(g),
|
|
packages = pkgs,
|
|
packages_without_entry = unregistered,
|
|
platforms = plats,
|
|
arches = arches,
|
|
proposed_entries = if (length(proposed) > 0L) proposed else NULL
|
|
)
|
|
})
|
|
}
|