27 lines
No EOL
1.7 KiB
Text
27 lines
No EOL
1.7 KiB
Text
FROM redhat/ubi9
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ARG RED_HAT_DEV_PW
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ENV PATH=/opt/R/4.4.1/bin:$PATH
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ENV TZ="Europe/Berlin"
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ARG GITHUB_PAT
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RUN subscription-manager register --username devxy --password "$RED_HAT_DEV_PW" && subscription-manager repos --enable codeready-builder-for-rhel-9-aarch64-rpms
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RUN dnf install -y https://dl.fedoraproject.org/pub/epel/epel-release-latest-9.noarch.rpm && dnf install -y epel-release
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RUN dnf install -y -q lapack-devel git gcc g++ fontconfig-devel fribidi-devel libjpeg-turbo-devel libtiff-devel htop libgit2-devel hiredis ccache libpq-devel libxml2-devel libgit2-devel
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### CUSTOM DEPENDENCIES
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# These usually are not packaged in OS repositories and need to be installed from source
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# - JAGS (needed for runjags which itself is again a dependency of many packages)
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RUN curl -L -O https://sourceforge.net/projects/mcmc-jags/files/JAGS/4.x/Source/JAGS-4.3.2.tar.gz && tar -xzf JAGS-4.3.2.tar.gz && cd JAGS-4.3.2 && ./configure && make && make install && rm -rf JAGS-4.3.2.tar.gz JAGS-4.3.2 && cd ..
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### INSTALL R
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RUN curl -O https://devxy-r-builds.s3.eu-central-2.amazonaws.com/el9/R-4.4.1-1-1.aarch64.rpm
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RUN dnf install -q -y R-4.4.1-1-1.aarch64.rpm
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RUN R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
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COPY . .
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# FIXME: switch to pak after https://github.com/r-lib/pak/issues/628
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RUN R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE); options(Ncpus = 4, repos = structure(c(devxy = "https://cran.devxy.io/arm64/rhel9/latest", CRAN = "https://cloud.r-project.org"))); install.packages("remotes"); remotes::install_deps()'
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RUN rm -rf r-pkg-binaries
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CMD ["/bin/bash"] |