pat-s
72de7ae6d1`arm64/alpine321` (22,930 entries) and `arm64/alpine322` (24,696 entries) advertise `Built: R <ver>; NA; ...`. uvr matches the stamp's platform triple plus R minor to pick binary over source, so no client matches those slots and both silently serve as source-only, which is the regression the stamp was added to prevent. The tarballs themselves carry the correct triple; only the index is wrong. Re-running the normal index update does not fix it: `upload_package_index()` reuses the slot's remote `PACKAGES.db` and cranlike's `update_db()` only reparses files whose md5 changed. Dropping `PACKAGES.db` to force a full reparse does work, but for an S3 repo cranlike reads each package's metadata from the CRAN source mirror on GitHub, so a 25k-entry slot means 25k requests to raw.githubusercontent.com and a real risk of being rate-limited part-way. Only the `Built` column is wrong, so correct it in place: patch the column in `PACKAGES.db`, put it back, and let `upload_package_index()` re-emit `PACKAGES*` from it. `update_db()` always rewrites the index files even when nothing was reparsed, so no tarball is re-read and nothing is fetched from GitHub. Alpine 3.21 is EOL: the website advertises only 3.23/3.24 and `process-updates.yaml` dropped it, so remove its two leftover matrix entries from the archive pipeline rather than repairing that slot.
97 lines
2.6 KiB
YAML
97 lines
2.6 KiB
YAML
### Manual repair of a slot whose PACKAGES index advertises a broken `Built`
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### stamp (e.g. `Built: R 4.5.0; NA; ...`).
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#
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# uvr matches the stamp's platform triple plus R minor to decide binary vs
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# source, so an unusable triple turns a whole slot source-only. See
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# local/repair-built-stamp.R for why this patches PACKAGES.db in place instead
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# of forcing a full reparse.
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#
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# Run with `dry_run: true` first: it reports how many entries are broken per
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# slot and changes nothing. Pick the R version the slot should advertise, which
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# is the R_VERSION its entry in .crow/process-updates.yaml uses.
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variables:
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target_arch:
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description: 'Architecture of the slot to repair.'
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options:
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- amd64
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- arm64
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default: arm64
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OS:
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description: 'Base OS image name.'
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options:
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- alpine
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- redhat
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- ubuntu
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default: alpine
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OS_VERSION:
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description: 'OS image tag. Must match OS (alpine: 3.22/3.23/3.24; redhat: 8/9/10; ubuntu: jammy/noble/resolute).'
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options:
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- '3.22'
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- '3.23'
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- '3.24'
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- '8'
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- '9'
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- '10'
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- 'jammy'
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- 'noble'
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- 'resolute'
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default: '3.22'
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R_VERSION:
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description: 'R version whose stamp the slot should advertise.'
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options:
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- 4.5.3
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- 4.4.3
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default: 4.5.3
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dry_run:
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description: 'Report what would change without writing anything.'
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options:
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- 'true'
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- 'false'
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default: 'true'
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when:
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- event: manual
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evaluate: 'target_arch == "${ARCH}"'
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skip_clone: true
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labels:
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platform: linux/${ARCH}
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group: rpkgs-${ARCH}
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matrix:
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include:
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- ARCH: amd64
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- ARCH: arm64
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steps:
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- name: 'Repair Built stamp'
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image: 'reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}'
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pull: true
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environment:
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B2_S3_ACCESS_KEY:
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from_secret: B2_S3_ACCESS_KEY
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B2_S3_SECRET_KEY:
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from_secret: B2_S3_SECRET_KEY
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REPO_RO_TOKEN:
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from_secret: REPO_RO_TOKEN
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GIT_USER: pat-s
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commands:
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- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
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- /opt/R/$R_VERSION/bin/Rscript local/install-bincraft.R
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- /opt/R/$R_VERSION/bin/R -q -e 'packageVersion("bincraft")'
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- |
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if [ "$dry_run" = "false" ]; then
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/opt/R/$R_VERSION/bin/Rscript local/repair-built-stamp.R "$ARCH" --apply
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else
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/opt/R/$R_VERSION/bin/Rscript local/repair-built-stamp.R "$ARCH"
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fi
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backend_options:
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docker:
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resources:
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requests:
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memory: 2Gi
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cpu: 1000m
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limits:
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memory: 8Gi
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cpu: 2000m
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