build-cran-binaries/build-all-versions-install-deps.yaml
pat-s 6faa3772d1
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refactor(ci): use multi-R-version images across workflows (#70)
## Summary

- Switches all 64 `.crow/*.yaml` workflows, the `Justfile`, and the commented-out `build-all-versions-install-deps.yaml` template to the new multi-R-version container images.
- Each image tag drops `-${R_VERSION}` (e.g. `build-env-alpine:3.22-4.5` → `build-env-alpine:3.22`); workflows pick an R version by calling `/opt/R/${R_VERSION}/bin/R` explicitly.
- Pattern-1 workflows (hard-coded image tag) gain a single `R_VERSION:` env var per file.
- Pattern-2 workflows (`build-all-versions-*`, matrix-driven) continue to receive `R_VERSION` via `crow pipeline create --var`.

## Platform → R_VERSION mapping

| Platform | Image | R_VERSION |
| --- | --- | --- |
| alpine 3.22 / 3.23 | `build-env-alpine:3.{22,23}` | 4.5.3 |
| ubuntu jammy / noble | `build-env-ubuntu:{jammy,noble}` | 4.4.3 |
| redhat 8 / 9 | `build-env-redhat:{8,9}` | 4.4.3 |
| redhat 10 | `build-env-redhat:10` | 4.5.3 |

The `alpine-321` audit-only workflows fall back to `build-env-alpine:3.23` since no 3.21 image exists in the new scheme; the audits only query S3/CRAN, so the container OS does not affect correctness.

## Bug fixes folded in

1. All six `weekly-audit-missing-alpine-*.yaml` files were pinned to `alpine:3.23-4.5` regardless of platform.
   Now each one points at its own alpine image.
2. All fourteen `update-package-index-*.yaml` files were pinned to `build-env-ubuntu:noble-4.4` (or `noble-4.5` for `redhat-10-amd64`) regardless of platform.
   Now each one uses its own platform's image.
3. `process-updates-ubuntu-2404-{amd64,arm64}.yaml` had `R_VERSION` of `4.4` (no patch) baked into the tag.
   Aligned to `4.4.3`, matching the audit and rebuild counterparts.

## Smoke targets (post-merge)

One workflow per shape, ready to dry-run:

- `process-updates-alpine-322-amd64.yaml`
- `weekly-rebuild-missing-redhat-9-amd64.yaml`
- `weekly-audit-missing-ubuntu-2204-amd64.yaml`
- `update-package-index-redhat-10-amd64.yaml`
- `archive-missed-packages.yaml`
- `build-all-versions-amd64.yaml` (with its install-deps predecessor)
- `build-r-minor-sensitive-packages.yaml`

## Follow-ups (out of scope, surfaced during review)

- `process-updates-redhat-10-{amd64,arm64}.yaml` set `codename = "rhel9"` in their `upload_package_index(...)` calls.
  Pre-existing bug — should be `"rhel10"`. The `update-package-index-redhat-10-*` counterparts already use `"rhel10"` correctly.
- `update-package-index-redhat-8-amd64.yaml` is missing the `packageVersion("bincraft")` diagnostic line that every sibling file has.
  Pre-existing asymmetry between amd64 and arm64.

## Spec & plan

- Spec: `docs/superpowers/specs/2026-05-25-multi-r-version-images-design.md`
- Plan: `docs/superpowers/plans/2026-05-25-multi-r-version-images.md`

Reviewed-on: #70
2026-05-26 08:51:27 +00:00

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2.6 KiB
YAML

# ### Required extra vars
# # ARCH (amd64)
# # OS (alpine)
# # OS_VERSION (3.22)
# # R_VERSION (4.5)
# # when:
# # - event: manual
# # evaluate: 'task == "build-all-arm64"'
# # - event: manual
# # evaluate: 'task == "build-all-amd64"'
# skip_clone: true
# labels:
# platform: linux/amd64
# backend: kubernetes
# steps:
# - name: 'Install common R deps'
# image: "reg.devxy.io/rpkgs/build-env-${OS}:${OS_VERSION}"
# pull: true
# environment:
# REPO_RO_TOKEN:
# from_secret: REPO_RO_TOKEN
# GITHUB_PAT:
# from_secret: GITHUB_PAT
# HETZNER_S3_ACCESS_KEY_K3S:
# from_secret: HETZNER_S3_ACCESS_KEY_K3S
# HETZNER_S3_SECRET_KEY_K3S:
# from_secret: HETZNER_S3_SECRET_KEY_K3S
# # normal env vars
# GIT_USER: pat-s
# # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
# # R_PKG_CACHE_DIR: /mnt/cache/pkgcache
# R_LIBS_USER: /mnt/cache/R-pkgs
# CCACHE_DIR: /mnt/cache/ccache
# volumes:
# - ${ARCH}-binaries-r-dep-cache-${OS}-${OS_VERSION//./}:/mnt/cache
# commands:
# - git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
# - mkdir -p /mnt/cache/R-pkgs
# - rm -rf /mnt/cache/R-pkgs/00LOCK-* /mnt/cache/R-pkgs/bincraft /mnt/cache/pkgcache
# - /opt/R/${R_VERSION}/bin/R -q -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
# - /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git", dependencies = TRUE)'
# - /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")'
# # - /opt/R/${R_VERSION}/bin/R -q -e "future::plan('multisession', workers = 6L); pkgs = bincraft::query_packages_without_historic_versions('alpine322', 'amd64'); saveRDS(pkgs, '/mnt/cache/pkgs_amd64.rds')"
# - /opt/R/${R_VERSION}/bin/R -q -e "future::plan('multisession', workers = 6L); pkgs = bincraft::query_packages_without_historic_versions('alpine323', 'arm64'); saveRDS(pkgs, '/mnt/cache/pkgs_arm64.rds')"
# backend_options:
# kubernetes:
# resources:
# requests:
# memory: 1000Mi
# cpu: 1000m
# limits:
# memory: 4500Mi
# cpu: 8000m
# nodeSelector:
# kubernetes.io/arch: ${ARCH}
# tolerations:
# - key: 'CI'
# operator: 'Equal'
# value: 'true'
# effect: 'NoSchedule'