pat-s
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## Summary
- Switches all 64 `.crow/*.yaml` workflows, the `Justfile`, and the commented-out `build-all-versions-install-deps.yaml` template to the new multi-R-version container images.
- Each image tag drops `-${R_VERSION}` (e.g. `build-env-alpine:3.22-4.5` → `build-env-alpine:3.22`); workflows pick an R version by calling `/opt/R/${R_VERSION}/bin/R` explicitly.
- Pattern-1 workflows (hard-coded image tag) gain a single `R_VERSION:` env var per file.
- Pattern-2 workflows (`build-all-versions-*`, matrix-driven) continue to receive `R_VERSION` via `crow pipeline create --var`.
## Platform → R_VERSION mapping
| Platform | Image | R_VERSION |
| --- | --- | --- |
| alpine 3.22 / 3.23 | `build-env-alpine:3.{22,23}` | 4.5.3 |
| ubuntu jammy / noble | `build-env-ubuntu:{jammy,noble}` | 4.4.3 |
| redhat 8 / 9 | `build-env-redhat:{8,9}` | 4.4.3 |
| redhat 10 | `build-env-redhat:10` | 4.5.3 |
The `alpine-321` audit-only workflows fall back to `build-env-alpine:3.23` since no 3.21 image exists in the new scheme; the audits only query S3/CRAN, so the container OS does not affect correctness.
## Bug fixes folded in
1. All six `weekly-audit-missing-alpine-*.yaml` files were pinned to `alpine:3.23-4.5` regardless of platform.
Now each one points at its own alpine image.
2. All fourteen `update-package-index-*.yaml` files were pinned to `build-env-ubuntu:noble-4.4` (or `noble-4.5` for `redhat-10-amd64`) regardless of platform.
Now each one uses its own platform's image.
3. `process-updates-ubuntu-2404-{amd64,arm64}.yaml` had `R_VERSION` of `4.4` (no patch) baked into the tag.
Aligned to `4.4.3`, matching the audit and rebuild counterparts.
## Smoke targets (post-merge)
One workflow per shape, ready to dry-run:
- `process-updates-alpine-322-amd64.yaml`
- `weekly-rebuild-missing-redhat-9-amd64.yaml`
- `weekly-audit-missing-ubuntu-2204-amd64.yaml`
- `update-package-index-redhat-10-amd64.yaml`
- `archive-missed-packages.yaml`
- `build-all-versions-amd64.yaml` (with its install-deps predecessor)
- `build-r-minor-sensitive-packages.yaml`
## Follow-ups (out of scope, surfaced during review)
- `process-updates-redhat-10-{amd64,arm64}.yaml` set `codename = "rhel9"` in their `upload_package_index(...)` calls.
Pre-existing bug — should be `"rhel10"`. The `update-package-index-redhat-10-*` counterparts already use `"rhel10"` correctly.
- `update-package-index-redhat-8-amd64.yaml` is missing the `packageVersion("bincraft")` diagnostic line that every sibling file has.
Pre-existing asymmetry between amd64 and arm64.
## Spec & plan
- Spec: `docs/superpowers/specs/2026-05-25-multi-r-version-images-design.md`
- Plan: `docs/superpowers/plans/2026-05-25-multi-r-version-images.md`
Reviewed-on: #70
83 lines
3 KiB
YAML
83 lines
3 KiB
YAML
when:
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- event: [cron]
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cron: update-package-index-alpine-322-arm64
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- event: [cron]
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cron: update-package-index
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- event: manual
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skip_clone: true
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depends_on:
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- update-package-index-alpine-322-amd64
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steps:
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- name: Upload PACKAGES files
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image: reg.devxy.io/rpkgs/build-env-alpine:3.22
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pull: true
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environment:
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RED_HAT_DEV_PW:
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from_secret: RED_HAT_DEV_PW
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B2_S3_ACCESS_KEY:
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from_secret: B2_S3_ACCESS_KEY
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B2_S3_SECRET_KEY:
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from_secret: B2_S3_SECRET_KEY
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PGPASS:
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from_secret: PGPASS
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REPO_RO_TOKEN:
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from_secret: REPO_RO_TOKEN
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GITHUB_PAT:
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from_secret: GITHUB_PAT
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# normal env vars
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GIT_USER: pat-s
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NTFY_SERVER:
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from_secret: NTFY_SERVER
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NTFY_TOPIC:
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from_secret: NTFY_TOPIC
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NTFY_AUTH: TRUE
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NTFY_PASSWORD:
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from_secret: ntfy_token
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# set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
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R_PKG_CACHE_DIR: /mnt/cache/pkgcache
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R_LIBS_USER: /mnt/cache/R-pkgs
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R_VERSION: 4.5.3
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# volumes:
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# - arm64-binaries-r-dep-cache-alpine-322:/mnt/cache
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commands:
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- git clone -q https://pat-s:$$REPO_RO_TOKEN@git.devxy.io/devxy/build-cran-binaries.git .
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- rm -rf /mnt/cache/packages/*
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- /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("git::https://codefloe.com/rpkgs/bincraft.git")'
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- /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/cranlike@s3")'
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- /opt/R/${R_VERSION}/bin/R -q -e 'pak::pak("pat-s/desc@description-from-remote")'
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- /opt/R/${R_VERSION}/bin/R -q -e 'packageVersion("bincraft")'
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# - cd /mnt/cache/packages
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- /opt/R/${R_VERSION}/bin/R -q -e 'options(crayon.enabled = TRUE); library(bincraft); future::plan("multisession", workers = 4); library(progressr); handlers(global = TRUE); handlers("progress"); upload_package_index(codename = "alpine322", s3_endpoint = "https://s3.eu-central-003.backblazeb2.com", s3_region = "eu-central-003", s3_bucket = "devxy-rpkgs-binaries", s3_access_key_id = Sys.getenv("B2_S3_ACCESS_KEY"), s3_secret_access_key = Sys.getenv("B2_S3_SECRET_KEY"))'
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backend_options:
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kubernetes:
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resources:
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requests:
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memory: 2600Mi
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cpu: 2000m
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limits:
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memory: 2600Mi
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cpu: 8000m
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nodeSelector:
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kubernetes.io/arch: 'arm64'
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tolerations:
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- key: 'CI'
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operator: 'Equal'
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value: 'true'
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effect: 'NoSchedule'
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- name: Purge CDN cache
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image: reg.devxy.io/docker.io/library/alpine:3.23
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environment:
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BUNNYNET_API_KEY:
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from_secret: BUNNYNET_API_KEY
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SUBDOMAIN1: 'cran.devxy.io'
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SUBDOMAIN2: 'cran.allianceswisspass.devxy.io'
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SUBDOMAIN3: 'cran.rpkgs.com'
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OS_ID: alpine-322
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ARCH: arm64
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commands:
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- apk add --no-cache -q bash curl
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- bash scripts/purge_cdn_cache.sh "$BUNNYNET_API_KEY" "$ARCH" "$OS_ID" "$SUBDOMAIN1" "$SUBDOMAIN2" "$SUBDOMAIN3"
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