build-cran-binaries/.woodpecker/build.yaml

when:
  event: [manual]

skip_clone: true

matrix:
  include:
    # - PLATFORM: redhat-9
    #   BLOCK: 20099:21169
    # - PLATFORM: redhat-8
    #   BLOCK: 20099:21169
    # - PLATFORM: ubuntu-2404
    #   BLOCK: 20099:21169
    # - PLATFORM: ubuntu-2204
    #   BLOCK: 20099:21169
    - PLATFORM: alpine-320
      BLOCK: 4676:length(pkgs)
steps:
  - name: 'Build binaries (${PLATFORM}: ${BLOCK})'
    secrets: [red_hat_dev_pw, aws_access_key_id, aws_secret_access_key, pgpass, git_ro_token, GITHUB_PAT]
    image: docker.io/devxygmbh/arm-binaries-r-${PLATFORM}
    pull: true
    # to ensure the PACKAGES upload step is being executed
    failure: ignore
    environment:
      GIT_USER: pat-s
      # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
      R_PKG_CACHE_DIR: /mnt/cache/pkgcache
      R_LIBS_USER: /mnt/cache/R-pkgs
      CCACHE_DIR: /mnt/cache/ccache
    volumes:
      - arm-binaries-r-dep-cache-${PLATFORM}:/mnt/cache
    commands:
      # download latest package version (avoid having to rebuild image every time)
      # rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169
      - git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/arm64-r-binaries.git .
      - rm -rf /mnt/cache/R-pkgs/00LOCK-arm64-r-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR
      # for some reason this one is often corrupt on redhat-9
      - rm -rf /mnt/cache/R-pkgs/RPostgres /mnt/cache/pkgcache/R/pkgcache
      - R -q -e 'devtools::install(); packageVersion("bincraftR")'
      - mkdir -p /root/.R && /bin/bash -c 'echo -e "CXX_STD = CXX14\nCC=ccache gcc\nCPP=ccache gcc\nCXX=ccache g++\nCXX11=ccache g++\nCXX14=ccache g++\nCXX17=ccache g++\nF77=ccache /usr/bin/gfortran\nFC=ccache /usr/bin/gfortran" >> /root/.R/Makevars'
      # manually install some packages into the cache so that some builds don't fail
      # Hmisc -> ABCanalysis
      # - R -q -e 'Sys.setenv(PKG_SYSREQS = TRUE, PKG_SYSREQS_VERBOSE = TRUE, PKG_SYSREQS_PLATFORM = "redhat-9"); pak::pak(c("Hmisc", "pls", "abd", "doRNG", "devtools"))'
      # more complicated system dependencies which pak cannot resolve
      - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      # set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point
      - R -q -e 'options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = NULL, repos = structure(c(getOption("repos"),INLA="https://inla.r-inla-download.org/R/stable"))); pkgs = tools::CRAN_package_db()[[1]]; pkgs = setdiff(pkgs[${BLOCK}], c("biplotbootGUI", "cncaGUI", "dynBiplotGUI", "ade4TkGUI", "BlockmodelingGUI", "cncaGUI", "EventDetectGUI", "irtGUI", "KappaGUI", "magickGUI", "miniGUI", "multibiplotGUI", "TextMiningGUI", "later", "RclusTool", "Rcmdr", "RcmdrMisc", "RcmdrPlugin.aRnova", "RcmdrPlugin.BiclustGUI", "RcmdrPlugin.BWS1", "RcmdrPlugin.BWS2", "RcmdrPlugin.BWS3", "RcmdrPlugin.cpd", "RcmdrPlugin.DCCV", "RcmdrPlugin.DCE", "RcmdrPlugin.depthTools", "RcmdrPlugin.DoE", "RcmdrPlugin.EACSPIR", "RcmdrPlugin.EBM", "RcmdrPlugin.EcoVirtual", "RcmdrPlugin.Export", "RcmdrPlugin.EZR",  "RcmdrPlugin.FactoMineR", "RcmdrPlugin.GWRM", "RcmdrPlugin.HH", "RcmdrPlugin.KMggplot2", "RcmdrPlugin.MA", "RcmdrPlugin.MPAStats", "RcmdrPlugin.NMBU", "RcmdrPlugin.orloca", "RcmdrPlugin.PcaRobust", "RcmdrPlugin.RiskDemo", "RcmdrPlugin.RMTCJags", "RcmdrPlugin.ROC", "RcmdrPlugin.sos" , "RcmdrPlugin.survival", "RcmdrPlugin.TeachingDemos", "RcmdrPlugin.TeachStat", "RcmdrPlugin.temis", "RcmdrPlugin.UCA", "RcmdrPlugin.WorldFlora", "sf", "StratigrapheR", "tcltk2", "TVMM", "uHMM", "RInno")); library(bincraftR); future::plan("multisession", workers = 4, rscript_startup = quote(options(crayon.enabled = TRUE))); foo = lapply(pkgs, function(x) build_binary_package(x, build_for_minor=FALSE, debug = FALSE, force = TRUE, platform = "${PLATFORM}"))'
    backend_options:
      kubernetes:
        ### PROD
        resources:
          requests:
            memory: 25Gi
            cpu: 12000m
          limits:
            memory: 32Gi
            cpu: 16000m
        # DEBUG
        # resources:
        #   requests:
        #     memory: 4Gi
        #     cpu: 2000m
        #   limits:
        #     memory: 4Gi
        #     cpu: 2000m
        nodeSelector:
          kubernetes.io/arch: 'arm64'
        tolerations:
          - key: "CI"
            operator: "Equal"
            value: "true"
            effect: "NoSchedule"
  # - name: Upload PACKAGES files
  #   secrets: [red_hat_dev_pw, aws_access_key_id, aws_secret_access_key, pgpass, git_ro_token]
  #   image: docker.io/pats22/arm-binaries-r-ubi9
  #   pull: true
  #   environment:
  #     GIT_USER: pat-s
  #     # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
  #     R_PKG_CACHE_DIR: /mnt/cache/pkgcache
  #     R_LIBS_USER: /mnt/cache/R-pkgs
  #   volumes:
  #     - arm-binaries-r-dep-cache-rhel9:/mnt/cache
  #   commands:
  #     # download latest package version (avoid having to rebuild image every time)
  #     # rscript_startup arg: required to pass down global option to future workers https://github.com/HenrikBengtsson/future/issues/134#issuecomment-2245666169
  #     - R -q -e 'pak::local_install(); packageVersion("bincraftR")'
  #     - R -q -e 'pak::pak(c("dyfanjones/s3fs", "pat-s/desc@description-from-remote", "pat-s/cranlike@s3"))'
  #     - cd /mnt/cache/packages
  #     - R -q -e 'options(crayon.enabled = TRUE); library(bincraftR); upload_package_index()'
  #   backend_options:
  #     kubernetes:
  #       resources:
  #         requests:
  #           memory: 1000Mi
  #           cpu: 0m
  #         limits:
  #           memory: 1300Mi
  #           cpu: 1000m
  #       nodeSelector:
  #         kubernetes.io/arch: 'arm64'