pat-s
6373712c70StanHeaders' init_threadpool_tbb.hpp unconditionally includes the legacy <tbb/tbb_stddef.h> for TBB version detection, but that header was removed in oneTBB 2021+ (the version StanHeaders now bundles), so rstan's Module.cpp fails to compile when rstan is pulled in as a transitive dependency (e.g. of ctsem). Pre-define TBB_INTERFACE_NEW via CPPFLAGS so the header's own guard skips the removed include and selects the modern tbb/global_control.h + tbb/task_arena.h path that the bundled TBB provides. Preserve -I/usr/local/include since the CPPFLAGS override replaces the R default.
34 lines
1.9 KiB
JSON
34 lines
1.9 KiB
JSON
[
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{
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"package": "RcppParallel",
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"versions": "*",
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"platforms": ["alpine", "ubuntu-2604"],
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"env": {},
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"configure_args": [],
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"makevars": {},
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"patch": "RcppParallel/disable-tbb.patch",
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"reason": "bundled Intel TBB build hangs/fails on musl (Alpine) and newer toolchains (g++ 15 on ubuntu-2604); patch unsets USE_TBB and forces -DRCPP_PARALLEL_USE_TBB=0 so RcppParallel skips the bundled build and uses the TinyThread backend"
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},
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{
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"package": "fs",
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"versions": "*",
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"platforms": ["*"],
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"env": {},
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"configure_args": [],
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"makevars": {},
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"patch": "fs/force-vendored-libuv.patch",
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"reason": "fs 2.x configure links system libuv whenever pkg-config finds libuv-devel (installed as a build-time sysreq), producing an fs.so with NEEDED libuv.so.1. That binary fails to dyn.load on consumer machines lacking runtime libuv, because install.packages/renv do not install SystemRequirements (only pak does, and only in the build container). The patch short-circuits configure to copy src/Makevars.vendor and build the bundled static libuv (needs cmake) so the binary is self-contained on every platform. An env/pkg-config override was tried first but the rebuilt binary still linked libuv.so.1, so a source patch is used instead."
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},
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{
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"package": "rstan",
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"versions": "*",
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"platforms": ["*"],
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"env": {},
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"configure_args": [],
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"makevars": {
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"CPPFLAGS": "-DTBB_INTERFACE_NEW -I/usr/local/include"
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},
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"patch": null,
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"reason": "StanHeaders' init_threadpool_tbb.hpp unconditionally includes the legacy <tbb/tbb_stddef.h> (removed in oneTBB 2021+) for version detection, breaking compilation of Module.cpp against the bundled oneTBB. Pre-defining TBB_INTERFACE_NEW skips that include and selects the modern tbb/global_control.h + tbb/task_arena.h path that the bundled TBB provides (-I/usr/local/include preserves the default CPPFLAGS the override replaces)"
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}
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]
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