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142 lines
6 KiB
Diff
142 lines
6 KiB
Diff
diff --git a/R/aaa.R b/R/aaa.R
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index 568a2aa..2744059 100644
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--- a/R/aaa.R
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+++ b/R/aaa.R
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@@ -5,4 +5,21 @@ TBB_LIB <- ""
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TBB_INC <- ""
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TBB_NAME <- "tbb"
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-TBB_MALLOC_NAME <- "tbbmalloc"
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\ No newline at end of file
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+TBB_MALLOC_NAME <- "tbbmalloc"
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+
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+# bincraft patch: build images (ours did until build-env-images c51ed09) and
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+# plenty of user environments export TBB_ROOT / TBB_LIB / TBB_INC. A binary we
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+# publish always carries its own oneTBB in RcppParallel/lib -- see the
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+# companion changes in tools/config/configure.R and src/install.libs.R -- so
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+# honouring those variables at run time is actively harmful: .onLoad() would
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+# dyn.load() a second, unrelated TBB into the process next to the bundled one
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+# (two copies of the same symbols in the global scope, which segfaults R on
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+# load), and RcppParallelLibs() / CxxFlags() would hand that system TBB to
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+# dependents such as rstan, putting NEEDED libtbb.so.12 back into their
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+# binaries. Read the variables only when explicitly opted back in.
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+bincraftGetenv <- function(name, unset = "") {
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+ if (Sys.getenv("BINCRAFT_ALLOW_SYSTEM_TBB", unset = "FALSE") == "TRUE")
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+ Sys.getenv(name, unset = unset)
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+ else
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+ unset
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+}
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\ No newline at end of file
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diff --git a/R/tbb.R b/R/tbb.R
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index b071833..e3bf7a5 100644
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--- a/R/tbb.R
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+++ b/R/tbb.R
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@@ -19,3 +19,3 @@ tbbLibraryPath <- function(name = NULL) {
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# find root for TBB install
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- tbbRoot <- Sys.getenv("TBB_LIB", unset = tbbRoot())
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+ tbbRoot <- bincraftGetenv("TBB_LIB", unset = tbbRoot())
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if (is.null(name))
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@@ -63,3 +63,3 @@ tbbCxxFlags <- function() {
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# if TBB_INC is set, apply those library paths
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- tbbInc <- Sys.getenv("TBB_INC", unset = TBB_INC)
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+ tbbInc <- bincraftGetenv("TBB_INC", unset = TBB_INC)
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if (!file.exists(tbbInc)) {
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@@ -122,3 +122,3 @@ tbbLdFlags <- function() {
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# shortcut if TBB_LIB defined
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- tbbLib <- Sys.getenv("TBB_LINK_LIB", Sys.getenv("TBB_LIB", unset = TBB_LIB))
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+ tbbLib <- bincraftGetenv("TBB_LINK_LIB", bincraftGetenv("TBB_LIB", unset = TBB_LIB))
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if (nzchar(tbbLib)) {
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diff --git a/src/install.libs.R b/src/install.libs.R
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index 3b3cfda..c0e6f3e 100644
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--- a/src/install.libs.R
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+++ b/src/install.libs.R
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@@ -477,6 +477,18 @@ prependFlags <- function(prependFlags, toFlags) {
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tbbLib <- Sys.getenv("TBB_LIB")
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tbbInc <- Sys.getenv("TBB_INC")
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+# bincraft patch: the companion change in tools/config/configure.R stops an
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+# ambient TBB_LIB / TBB_INC from selecting a system TBB, but this script is
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+# also run directly by `R CMD INSTALL` (not only through the `tbb` rule in
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+# src/Makevars, which passes the configured values), so at install time it
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+# still sees the image's environment and would symlink the system libraries
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+# into RcppParallel/lib. Drop them here for the same reason, under the same
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+# opt-out.
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+if (Sys.getenv("BINCRAFT_ALLOW_SYSTEM_TBB", unset = "FALSE") != "TRUE") {
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+ tbbLib <- ""
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+ tbbInc <- ""
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+}
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+
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args <- commandArgs(trailingOnly = TRUE)
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if (identical(args, "build")) {
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if (nzchar(tbbLib) && nzchar(tbbInc)) {
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diff --git a/tools/config/configure.R b/tools/config/configure.R
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index c203a1f..0050b5c 100644
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--- a/tools/config/configure.R
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+++ b/tools/config/configure.R
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@@ -79,6 +79,24 @@ tbbRoot <- Sys.getenv("TBB_ROOT", unset = NA)
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tbbLib <- Sys.getenv("TBB_LIB", unset = NA)
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tbbInc <- Sys.getenv("TBB_INC", unset = NA)
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+# bincraft patch: ignore an ambient TBB_ROOT / TBB_LIB / TBB_INC. Our build
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+# images exported these until build-env-images c51ed09 (a leftover from
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+# RcppParallel 5.x, whose bundled Intel TBB would not build on musl or with
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+# modern g++), and any of them switches the branches below to a system TBB.
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+# The published binary then records NEEDED libtbb.so.12 (or libtbb.so.2 for
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+# the classic Intel TBB) and gets a RcppParallel/lib full of absolute symlinks
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+# into the image's library dir, so it cannot dyn.load on a consumer machine
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+# without that exact TBB. 6.x bundles oneTBB 2022 and builds it with cmake on
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+# every platform we ship, so the bundled copy is always the right choice here;
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+# forcing it in the package rather than relying on the image environment keeps
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+# the binary correct whichever image version CI happens to pull. Set
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+# BINCRAFT_ALLOW_SYSTEM_TBB=TRUE to restore the upstream behaviour.
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+if (Sys.getenv("BINCRAFT_ALLOW_SYSTEM_TBB", unset = "FALSE") != "TRUE") {
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+ tbbRoot <- NA
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+ tbbLib <- NA
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+ tbbInc <- NA
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+}
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+
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tbbName <- Sys.getenv("TBB_NAME", unset = "tbb")
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tbbMallocName <- Sys.getenv("TBB_MALLOC_NAME", unset = "tbbmalloc")
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@@ -225,12 +243,23 @@ define(
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)
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# set PKG_LIBS
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+#
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+# bincraft patch: the library directories below are passed as plain '-L', not
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+# '-Wl,-L'. gcc expands its own search dirs (/usr/lib64, /usr/lib/<triplet>)
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+# into explicit '-L' options ahead of anything forwarded verbatim with '-Wl,',
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+# so with '-Wl,-L' a system libtbb.so wins over the one named here: on a build
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+# host with a distro TBB installed, '-ltbb' resolves to that library and
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+# RcppParallel.so records its SONAME (libtbb.so.12, or libtbb.so.2 for the
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+# classic Intel TBB) instead of the bundled 'libtbb.so'. The binary then loads
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+# the system TBB rather than the copy shipped in RcppParallel/lib, and fails
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+# outright on a machine that has no system TBB. gcc places a plain '-L' before
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+# its built-in dirs, so the intended library is found first.
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pkgLibs <- if (!is.na(tbbLib)) {
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# a TBB supplied via TBB_LIB / TBB_ROOT. an rpath is meaningless on Windows,
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# where the loader has no equivalent -- see R/zzz.R for how we resolve there
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c(
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- "-Wl,-L\"$(TBB_LIB)\"",
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+ "-L\"$(TBB_LIB)\"",
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if (.Platform$OS.type != "windows")
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sprintf("-Wl,-rpath,%s", shQuote(tbbLib)),
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"-l$(TBB_NAME)",
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@@ -240,14 +269,14 @@ pkgLibs <- if (!is.na(tbbLib)) {
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} else if (R.version$os == "emscripten") {
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c(
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- "-Wl,-Ltbb/build/lib_release",
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+ "-Ltbb/build/lib_release",
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"-l$(TBB_NAME)"
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)
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} else {
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c(
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- "-Wl,-Ltbb/build/lib_release",
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+ "-Ltbb/build/lib_release",
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"-l$(TBB_NAME)",
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"-l$(TBB_MALLOC_NAME)"
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)
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