build-cran-binaries/.woodpecker/process_cran_updates.yaml

when:
  - event: [cron]
    cron: process-cran-updates

skip_clone: true

depends_on: 
  - warm_up_process_cran_updates

matrix:
  include:
    - PLATFORM: redhat-9
      PKGS_ID: rhel9
      ARCH: arm64
    - PLATFORM: redhat-8
      PKGS_ID: rhel8
      ARCH: arm64
    - PLATFORM: ubuntu-2404
      PKGS_ID: noble
      ARCH: arm64
    - PLATFORM: ubuntu-2204
      PKGS_ID: jammy
      ARCH: arm64
    - PLATFORM: alpine-320
      PKGS_ID: alpine320
      ARCH: arm64
    - PLATFORM: alpine-320
      PKGS_ID: alpine320
      ARCH: amd64

steps:
  - name: 'Processing Updates: (${PLATFORM})'
    secrets: [red_hat_dev_pw, aws_access_key_id, aws_secret_access_key, pgpass, git_ro_token, GITHUB_PAT]
    image: docker.io/devxygmbh/${ARCH}-binaries-r-${PLATFORM}
    pull: true
    environment:
      GIT_USER: pat-s
      # set the location of the 'pkgcache' cache dir which persists the R package dependencies needed to install the packages themselves
      R_PKG_CACHE_DIR: /mnt/cache/pkgcache
      R_LIBS_USER: /mnt/cache/R-pkgs
      CCACHE_DIR: /mnt/cache/ccache
    volumes:
      - ${ARCH}-binaries-r-dep-cache-${PLATFORM}:/mnt/cache
    commands:
      # download latest package version (avoid having to rebuild image every time)
      - git clone https://pat-s:$$git_ro_token@git.devxy.io/devxy/r-pkg-binaries.git .
      - rm -rf /mnt/cache/R-pkgs/00LOCK-r-pkg-binaries /mnt/cache/R-pkgs/00LOCK-bincraftR /opt/R/*/lib/R/library/RPostgres /mnt/cache/R-pkgs/00LOCK-RPostgres
      # for some reason paks pkgcache is often corrupt
      - rm -rf /mnt/cache/R-pkgs/pkgcache/ /mnt/cache/pkgcache/ /root/.cache/R/
      - R -q -e 'pak::meta_update()'
      - rm -rf /mnt/cache/R-pkgs/RPostgres /mnt/cache/pkgcache/R/pkgcache
      - R -q -e 'install.packages("RPostgres", repos = structure(c(devxy = "https://cran.devxy.io/${ARCH}/${PKGS_ID}/latest", CRAN = "https://cloud.r-project.org")))'
      - R CMD INSTALL .
      - mkdir -p /root/.R && /bin/bash -c 'echo -e "CXX_STD = CXX14\nCC=ccache gcc\nCPP=ccache gcc\nCXX=ccache g++\nCXX11=ccache g++\nCXX14=ccache g++\nCXX17=ccache g++\nF77=ccache /usr/bin/gfortran\nFC=ccache /usr/bin/gfortran" >> /root/.R/Makevars'
      - mkdir -p /mnt/cache/pkgcache /mnt/cache/R-pkgs /mnt/cache/ccache /mnt/cache/packages
      # set additional repos: important as otherwise some packages cannot be resolved (e.g. INLA). Also: setting our own binary repos so we can make use of them for dep installation at some point
      # options(future.globals.onReference = NULL): for some reason s3fs::file_delete() throws 'Error: Detected a non-exportable reference ('externalptr') in one of the globals ('FUN' of class 'function') used in the future expression' otherwise
      - xvfb-run R -q -e 'options(crayon.enabled = TRUE, Ncpus = 4, future.globals.onReference = "error", repos = structure(c(getOption("repos"),INLA="https://inla.r-inla-download.org/R/stable"))); pkgs = tools::CRAN_package_db()[[1]][${BLOCK}]; pkgs = setdiff(pkgs, c("biplotbootGUI", "cncaGUI", "dynBiplotGUI", "ade4TkGUI", "BlockmodelingGUI", "cncaGUI", "EventDetectGUI", "irtGUI", "KappaGUI", "magickGUI", "miniGUI", "multibiplotGUI", "TextMiningGUI", "later", "RclusTool", "Rcmdr", "RcmdrMisc", "RcmdrPlugin.aRnova", "RcmdrPlugin.BiclustGUI", "RcmdrPlugin.BWS1", "RcmdrPlugin.BWS2", "RcmdrPlugin.BWS3", "RcmdrPlugin.cpd", "RcmdrPlugin.DCCV", "RcmdrPlugin.DCE", "RcmdrPlugin.depthTools", "RcmdrPlugin.DoE", "RcmdrPlugin.EACSPIR", "RcmdrPlugin.EBM", "RcmdrPlugin.EcoVirtual", "RcmdrPlugin.Export", "RcmdrPlugin.EZR",  "RcmdrPlugin.FactoMineR", "RcmdrPlugin.GWRM", "RcmdrPlugin.HH", "RcmdrPlugin.KMggplot2", "RcmdrPlugin.MA", "RcmdrPlugin.MPAStats", "RcmdrPlugin.NMBU", "RcmdrPlugin.orloca", "RcmdrPlugin.PcaRobust", "RcmdrPlugin.RiskDemo", "RcmdrPlugin.RMTCJags", "RcmdrPlugin.ROC", "RcmdrPlugin.sos" , "RcmdrPlugin.survival", "RcmdrPlugin.TeachingDemos", "RcmdrPlugin.TeachStat", "RcmdrPlugin.temis", "RcmdrPlugin.UCA" , "RcmdrPlugin.WorldFlora", "sf", "StratigrapheR", "tcltk2", "TVMM", "uHMM")); library(bincraftR); future::plan("sequential"); options(progressr.enable = TRUE); progressr::handlers("cli"); progressr::handlers(global = TRUE); options(future.globals.onReference = NULL); process_cran_updates(interval = lubridate::interval(lubridate::today() - 2, lubridate::today() - 2), platform = "${PLATFORM}", process_updated = TRUE, process_new = TRUE)'
    backend_options:
      kubernetes:
        ### PROD
        resources:
          requests:
            memory: 12Gi
            cpu: 700m
          limits:
            memory: 14Gi
            cpu: 4000m
        # DEBUG
        # resources:
        #   requests:
        #     memory: 4Gi
        #     cpu: 2000m
        #   limits:
        #     memory: 4Gi
        #     cpu: 2000m
        nodeSelector:
          kubernetes.io/arch: '${ARCH}'
        tolerations:
          - key: 'CI'
            operator: 'Equal'
            value: 'true'
            effect: 'NoSchedule'

  - name: "ntfy"
    image: codeberg.org/l-x/woodpecker-ntfy:1.3.1
    when:
      - status: [failure]
    settings:
      url: https://ntfy.devxy.io/ci-builds
      token:
        from_secret: ntfy_token
      title: "CI '${CI_REPO}' failed"
      actions: view, Open build, ${CI_PIPELINE_URL}, clear=false;
      click: ${CI_BUILD_LINK}
      message: |
        Workflow: ${CI_WORKFLOW_NAME/\n//}
        Commit message: ${CI_COMMIT_MESSAGE/\n//}
        Commit Author: ${CI_COMMIT_AUTHOR/\n//}
    backend_options:
      kubernetes:
        resources:
          requests:
            memory: 100Mi
            cpu: 0m
          limits:
            memory: 300Mi
            cpu: 200m