build-cran-binaries/local/archive-missed-pkgs.R
pat-s d558e27c11
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feat: R-minor-sensitive binary builds (full + iterative) (#84)
## Summary

Builds R-minor-sensitive CRAN packages once per installed R minor version (into per-minor S3 slots `…/contrib/<x.y>/`) and everything else once into the generic slot, driven by bincraft 4.2.0's ABI classifier. Both the full and iterative pipelines are covered.

## What's in here

**Detection / precompute**

- `local/r-minor-helpers.R` — pure `classify_from_metadata()` (NeedsCompilation / risky `LinkingTo`) + `parse_build_args()`, with unit tests.
- `local/packages-to-build.R` — adds a per-package `r_minor_sensitive` flag: cheap CRAN-metadata rules first, source download + `bincraft::needs_per_minor_recompile()` only for the ambiguous compiled subset (fail-safe to sensitive). Classified once per package, applied to all versions.

**Full build**

- `local/build-all.R` — passes the per-row `is_r_minor_sensitive` flag; new `--sensitive-only` mode builds just the risky subset.
- `.crow/build-all-versions-{amd64,arm64}.yaml` — install-deps persists the sensitive subset; build step runs a sensitive-only pass under each non-primary `/opt/R/*` minor; new step uploads the generic index plus a per-minor index for each minor.

**Iterative build**

- All 14 `.crow/process-updates-*.yaml` — primary pass uses `r_minor_detection = 'classifier'`; a sensitive-only multi-R pass builds risky updates under each other minor; per-minor index upload added.

**Tooling / housekeeping**

- Pins bincraft `v4.1.1` → `v4.2.0` across all workflows; removes the superseded standalone `build-r-minor-sensitive-packages.yaml`.
- Adds prek/pre-commit hooks (prettier, markdownlint, editorconfig-checker, yamllint, air) and applies them repo-wide; excludes the verbatim GPL `LICENSE.md` and auxiliary shell scripts.
- Design + implementation docs under `docs/superpowers/`.

## Requires before merge

- A `v4.2.0` git tag must be pushed on the bincraft repo (codefloe.com/rpkgs/bincraft) — the workflow install steps pin `@v4.2.0`. The full-build install-deps clones `main`, so it is unaffected.

Reviewed-on: #84
2026-06-14 08:04:40 +00:00

44 lines
1.4 KiB
R

### Scope: Archive packages that have more than one entry in repository root
library(bincraft)
s3fs::s3_file_system(
aws_access_key_id = Sys.getenv("HETZNER_S3_ACCESS_KEY_K3S"),
aws_secret_access_key = Sys.getenv("HETZNER_S3_SECRET_KEY_K3S"),
endpoint = "https://hel1.your-objectstorage.com",
region_name = "hel1",
refresh = T
)
arch = "arm64"
os = "alpine321"
files <- s3fs::s3_dir_ls(sprintf(
"devxy-r-package-binaries-hel1/%s/%s/latest/src/contrib",
arch,
os
))
length(unique(sapply(strsplit(basename(files), "_"), function(x) x[1])))
non_archived = unique(sapply(strsplit(basename(files), "_"), function(x) {
x[1]
})[duplicated(sapply(strsplit(basename(files), "_"), function(x) x[1]))])
# RInno is not built because it only exists for Windows
non_archived = setdiff(non_archived, "RInno")
# future::plan("sequential", workers = 8)
future::plan("sequential", workers = 1)
# future.apply::future_lapply(non_archived, function(x) archive_package(x, codename = os, arch = arch))
lapply(non_archived, function(x) {
archive_package(
x,
codename = os,
arch = arch,
s3_region = "hel1",
s3_endpoint = "https://hel1.your-objectstorage.com",
s3_bucket = "devxy-r-package-binaries-hel1",
s3_access_key_id = Sys.getenv(
"HETZNER_S3_ACCESS_KEY_K3S",
s3_secret_access_key = Sys.getenv("HETZNER_S3_SECRET_KEY_K3S")
)
)
})
# archive_package()
# grep("duckdb_", files, value = T)