build-cran-binaries/local/label-removed-cran-packages.R
pat-s 3618168572
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fix(ci): pass the metadata DB to per-minor reindexes and fail on errors (#234)
Step 1 of rpkgs/bincraft#211: pass the metadata database explicitly so bincraft can drop its implicit production defaults.

## Changes

- Pass `metadata_db_*` explicitly to every per-minor `upload_package_index()` call in `reindex.yaml`, `process-updates.yaml`, `weekly-rebuild-reindex.yaml`, `build-all-versions.yaml` and `prune-stale-flat-binaries.yaml`.
- Replace `|| true` in those per-minor loops with a list of failed minors: every minor is still attempted, then the step exits 1 naming the ones that failed.
- Give the "Upload package indexes" step of `build-all-versions.yaml` the `PGPASS` secret. It never had it, so its per-minor reindexes always aborted and `|| true` hid that.
- Run the CDN purge in `process-updates.yaml` and `prune-stale-flat-binaries.yaml` even when a reindex failed, as `reindex.yaml` and `weekly-rebuild-reindex.yaml` already do, because the generic index was still replaced.
- `local/repair-built-stamp.R` passes the database too, and fails once all minors are tried instead of only printing the error.

The generic (non-per-minor) calls are unchanged: they never read the database.

## Behaviour change

A per-minor reindex that fails now turns the pipeline red instead of passing silently.
Expect build-all-versions runs to start reindexing per-minor slots for real, since they now have the password.

## Ordering

Merge this before rpkgs/bincraft's companion PR is released: `local/install-bincraft.R` installs the latest bincraft tag, and the explicit arguments work with both the current and the next release.

Reviewed-on: #234
2026-10-17 07:46:09 +00:00

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R

### Scope: List decomisisoned CRAN packages and updates them in the metadata DB
library(dplyr)
library(bincraft)
archived <- quickcode::archivedPkg() |>
filter(arch.status == "decom") |>
pull(name)
# Query all distinct pkgs in the DB
con <- DBI::dbConnect(
RPostgres::Postgres(),
dbname = "build_metadata",
host = "r-binaries.devxy.io",
port = 15432,
user = "r_binaries",
password = Sys.getenv("PGPASS"),
sslmode = "verify-full",
sslrootcert = bincraft::postgres_sslrootcert("verify-full")
)
pkgs_db <- query_metadata_table() |>
filter(removed == FALSE) |>
distinct(name) |>
pull(name)
# Check which pkgs in the DB match with the decomissioned ones
to_process <- pkgs_db[pkgs_db %in% archived]
# for all matches, set 'removed = TRUE'
sapply(to_process, function(.x) {
DBI::dbExecute(
con,
"UPDATE single_builds SET removed = 'TRUE' where name = $1",
params = list(.x)
)
})