build-cran-binaries/justfile
pat-s 2f732457d2
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feat(edge): route PACKAGES requests to the per-R-minor slot (#152)
## Problem

`install.packages("curl")` fails in `reg.devxy.io/r/r-alpine:4.5-3.24` with "package 'curl' is not available for this version of R", on both arches.

`curl` is not missing from the repo: it is in `…/latest/src/contrib/4.5/` and `…/4.6/`, the per-minor slots that base R cannot address. The image's repo URL resolves to `…/latest/src/contrib`, whose index does not list it. On `amd64/alpine324` that is 2 886 packages invisible to `install.packages()` (23 on `amd64/noble`) — what issue #63 records as "missing binaries".

Two further findings while investigating:

- The middleware only ever rewrote the bare `cran.rpkgs.com/src/contrib/…` form, and that form was broken for every Linux client on a stock R user agent: `ALPINE_REGEX`/`UBUNTU_REGEX`/`RHEL_REGEX` need a Posit-style UA that carries the distro, so stock R fell through to `extractOs()` and got redirected to `/amd64/linux-musl/latest/…`, a slot that does not exist.
- `PACKAGES*` is served `cdn-cache: BYPASS` (bincraft uploads it `no-store`), so the middleware sees every index request and no purge is needed for routing changes to take effect.

## What this changes

**`edge/rpkgs-router.ts`** — the middleware, now a reviewed file in this repo rather than dashboard state. It routes `PACKAGES`, `PACKAGES.gz` and `PACKAGES.rds` into `…/src/contrib/<x.y>/` for slots listed in `UNION_SLOTS`, and nothing else.

Tarballs are deliberately left alone. R keeps the `contriburl` it *asked for*, not the one the redirect served it, so every tarball URL is resolved against the flat directory and the union index steers the per-minor ones with a `Path: <x.y>` field. Rewriting a tarball request here would send flat-slot packages into a directory that does not hold them.

Also in the script: the phantom `linux-gnu`/`linux-musl` fallback is gone (an unidentifiable distro goes to CRAN, as an unparseable UA already did), and every redirect carries `Cache-Control: no-store` since its target depends on the User-Agent. The macOS branches are unchanged.

**`cdn.tf`** — `bunnynet_compute_script.rpkgs_router` with `content = file("edge/rpkgs-router.ts")`, the `UNION_SLOTS` variable, and `middleware_script` pointing at the resource instead of the literal `29277`.

`UNION_SLOTS` is empty, so merging and applying this changes no client's behaviour. A slot is added only once bincraft has republished its per-minor index as a union (rpkgs/bincraft#97); routing to a raw per-minor index would hide every package it does not carry. Rolling back is a variable edit, not a deploy.

**`specs/`, `plans/`** — the design and the implementation plan, including the two approaches that were rejected (edge-side merge, moving the minor up the path) and why.

## Verification

`just edge-test` runs 13 routing cases against the SDK's local server, so what is tested is the artifact that gets deployed; pass-through cases proxy to the real origin. All pass.

End to end, with the middleware in front of a locally built union index for `amd64/alpine324` (31 507 records), inside the runtime image:

```
curl:     7.1.0  -> …/latest/src/contrib/4.5  -> curl_7.1.0.tar.gz      717 725 B
jsonlite: 2.0.0  -> …/latest/src/contrib      -> jsonlite_2.0.0.tar.gz  1 055 849 B
```

`tofu validate` passes. `tofu plan` has not been run: no `BUNNYNET_API_KEY` available in this environment.

## Before applying

The script pre-dates this configuration, so it must be adopted, not created:

```sh
tofu import bunnynet_compute_script.rpkgs_router 29277
tofu plan
```

The plan should show an in-place `content` update and no replacement of the pull zone. Without the import, tofu creates a second script and repoints the zone at it. Note that `name = "rpkgs-router"` will rename the existing script on apply.

## Not fixed here

`install.packages("curl")` on `alpine324` will now *resolve*, then fail to build: that slot's tarballs are byte-identical CRAN **source** tarballs (no `Meta/`, no `Built:` in DESCRIPTION) which the index nevertheless stamps `Built: R 4.5.3; …-linux-musl`. Sampled: `amd64/alpine324` 3/12 binary, `arm64/alpine324` 13/30, `amd64/noble` 12/12, `amd64/alpine323` 17/20. That slot needs a rebuild, tracked separately.

Reviewed-on: #152
2026-08-07 14:12:22 +00:00

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Makefile

# Local helpers for build-cran-binaries.
#
# `rebuild` (re)builds specific versions of a single package on a given OS/arch
# by dispatching to a remote buildx builder (the build runs there, not locally).
# Sensitivity is auto-detected: risky packages land in the per-minor slot
# (contrib/<x.y>/), everything else in the generic slot; the touched index is
# refreshed so the result is immediately servable.
#
# Prerequisites:
# - buildx builders named `artemis` (amd64) and `gaia` (arm64), created with the
# docker-container driver (runs BuildKit on the remote host's docker daemon over
# SSH). The default `remote` driver does NOT work with an ssh:// docker host.
# Pass --config docker/buildkitd.toml so BuildKit's GC keeps a usable cache
# (the default caps the cache-mount tier at 512 MB, forcing re-downloads).
# docker buildx create --name artemis --driver docker-container --config docker/buildkitd.toml ssh://<user@host-amd64>
# docker buildx create --name gaia --driver docker-container --config docker/buildkitd.toml ssh://<user@host-arm64>
# - exported secrets: B2_S3_ACCESS_KEY, B2_S3_SECRET_KEY, PGPASS (GITHUB_PAT optional)
#
# Overridable (env or `just VAR=… rebuild …`):
# R_VERSION (default 4.5.3) — selects the R minor → the per-minor slot
# AMD64_BUILDER / ARM64_BUILDER — buildx builder names
#
# Examples:
# just rebuild alpine 3.23 amd64 rlang 1.1.4 1.1.3
# just rebuild redhat 10 arm64 data.table 1.15.4
# R_VERSION=4.4.3 just rebuild ubuntu noble amd64 Rcpp 1.0.12
r_version := env_var_or_default("R_VERSION", "4.5.3")
amd64_builder := env_var_or_default("AMD64_BUILDER", "artemis")
arm64_builder := env_var_or_default("ARM64_BUILDER", "gaia")
# (re)build PACKAGE at one or more VERSIONS on OS/TAG/ARCH via a remote builder
rebuild os tag arch package *versions:
#!/usr/bin/env bash
set -euo pipefail
if [ -z "{{ versions }}" ]; then
echo "error: provide at least one version, e.g. just rebuild alpine 3.23 amd64 rlang 1.1.4" >&2
exit 1
fi
case "{{ arch }}" in
amd64) builder="{{ amd64_builder }}" ;;
arm64) builder="{{ arm64_builder }}" ;;
*) echo "error: arch must be 'amd64' or 'arm64'" >&2; exit 1 ;;
esac
# Accept TF_VAR_-prefixed names (direnv) or plain names.
export B2_S3_ACCESS_KEY="${B2_S3_ACCESS_KEY:-${TF_VAR_B2_S3_ACCESS_KEY:-}}"
export B2_S3_SECRET_KEY="${B2_S3_SECRET_KEY:-${TF_VAR_B2_S3_SECRET_KEY:-}}"
: "${B2_S3_ACCESS_KEY:?set B2_S3_ACCESS_KEY or TF_VAR_B2_S3_ACCESS_KEY}"
: "${B2_S3_SECRET_KEY:?set B2_S3_SECRET_KEY or TF_VAR_B2_S3_SECRET_KEY}"
: "${PGPASS:?set PGPASS}"
secret_args=(
--secret id=b2_access,env=B2_S3_ACCESS_KEY
--secret id=b2_secret,env=B2_S3_SECRET_KEY
--secret id=pgpass,env=PGPASS
)
# GITHUB_PAT is optional (raises the GitHub API rate limit); pass only if set.
if [ -n "${GITHUB_PAT:-}" ]; then
secret_args+=(--secret id=github_pat,env=GITHUB_PAT)
fi
echo "Dispatching build of {{ package }} ({{ versions }}) on {{ os }}:{{ tag }}/{{ arch }} (R {{ r_version }}) to builder '$builder'"
docker buildx build \
--builder "$builder" \
--platform "linux/{{ arch }}" \
--no-cache \
--progress=plain \
--output type=cacheonly \
"${secret_args[@]}" \
--build-arg OS="{{ os }}" \
--build-arg OS_VERSION="{{ tag }}" \
--build-arg R_VERSION="{{ r_version }}" \
--build-arg PACKAGE="{{ package }}" \
--build-arg VERSIONS="{{ versions }}" \
--build-arg CACHEBUST="$(date +%s)" \
-f docker/build-one.Dockerfile \
local
# run the edge middleware routing matrix (uses a local deno, else the deno image)
edge-test:
#!/usr/bin/env bash
set -euo pipefail
if command -v deno >/dev/null 2>&1; then
deno test -A edge/rpkgs-router.test.ts
else
docker run --rm \
-v "$PWD:/w" -w /w \
-v deno-cache:/deno-dir \
denoland/deno:latest \
deno test -A edge/rpkgs-router.test.ts
fi